Genomic map of Lactobacillus prophage Lj965 (NC_005355)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_005355
Definition
Lactobacillus prophage Lj965, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
40190
Host Name
Lactobacillus johnsonii
Host domain
Bacteria
Is prophage?
undef
Number of proteins
46
%GC
35.14
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_958600.1 NC_005355_p45 lysin phrog_291 endolysin lysis 1 38440 39372
NP_958570.1 NC_005355_p15 replication protein phrog_10003 recombinase other 1 8364 9200
NP_958585.1 NC_005355_p30 major head protein phrog_29 major head protein head and packaging 1 21722 22771
NP_958577.1 NC_005355_p22 hypothetical protein phrog_30330 unknown function unknown function 1 14939 15535
NP_958584.1 NC_005355_p29 hypothetical protein phrog_909 major head protein head and packaging 1 21336 21701
NP_958568.1 NC_005355_p13 hypothetical protein phrog_25327 unknown function unknown function 1 7085 7450
NP_958569.1 NC_005355_p14 hypothetical protein phrog_674 unknown function unknown function 1 7462 8361
NP_958592.1 NC_005355_p37 hypothetical protein phrog_2066 unknown function unknown function 1 25421 25714
NP_958599.1 NC_005355_p44 holin phrog_10813 holin lysis 1 38100 38447
NP_958591.1 NC_005355_p36 hypothetical protein phrog_183 tail chaperone protein tail 1 24918 25328
NP_958594.1 NC_005355_p39 hypothetical protein phrog_1194 unknown function unknown function 1 31797 32153
NP_958588.1 NC_005355_p33 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 23441 23989
NP_958559.1 NC_005355_p4 hypothetical protein phrog_5059 unknown function unknown function -1 2708 3493
NP_958567.1 NC_005355_p12 hypothetical protein phrog_14447 unknown function unknown function 1 6567 6716
NP_958557.1 NC_005355_p2 superinfection immunity protein phrog_4980 superinfection exclusion moron, auxiliary metabolic gene and host takeover -1 1450 1974
NP_958556.1 NC_005355_p1 integrase phrog_1 integrase integration and excision -1 119 1294
NP_958572.1 NC_005355_p17 hypothetical protein phrog_22112 unknown function unknown function 1 9934 10218
NP_958566.1 NC_005355_p11 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision 1 6361 6570
NP_958580.1 NC_005355_p25 portal protein phrog_64 portal protein head and packaging 1 17719 19218
NP_958571.1 NC_005355_p16 replication protein phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 1 9210 9944
NP_958582.1 NC_005355_p27 minor head protein phrog_115 minor head protein head and packaging 1 19442 20524
NP_958579.1 NC_005355_p24 terminase large subunit phrog_2 terminase large subunit head and packaging 1 16429 17703
NP_958575.1 NC_005355_p20 hypothetical protein phrog_6345 unknown function unknown function 1 13504 14559
NP_958587.1 NC_005355_p32 hypothetical protein phrog_2168 unknown function unknown function 1 23095 23448
NP_958560.1 NC_005355_p5 hypothetical protein phrog_17771 unknown function unknown function -1 3465 3923
NP_958601.1 NC_005355_p46 hypothetical protein phrog_33700 unknown function unknown function 1 39798 40016
NP_958596.1 NC_005355_p41 hypothetical protein phrog_2566 unknown function unknown function 1 37173 37433
NP_958578.1 NC_005355_p23 terminase small subunit phrog_51 terminase small subunit head and packaging 1 15588 16442
NP_958583.1 NC_005355_p28 scaffold protein phrog_172 head scaffolding protein head and packaging 1 20679 21323
NP_958576.1 NC_005355_p21 hypothetical protein phrog_3136 unknown function unknown function 1 14537 14917
NP_958558.1 NC_005355_p3 hypothetical protein singleton unknown function unknown function -1 2067 2597
NP_958565.1 NC_005355_p10 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 5958 6236
NP_958574.1 NC_005355_p19 hypothetical protein phrog_248 transcriptional activator transcription regulation 1 11585 12067
NP_958564.1 NC_005355_p9 antirepressor phrog_63 anti-repressor Ant transcription regulation 1 5197 5946
NP_958593.1 NC_005355_p38 putative minor tail protein phrog_1535 tail length tape measure protein tail 1 25714 31779
NP_958562.1 NC_005355_p7 repressor phrog_8 transcriptional regulator transcription regulation -1 4430 4783
NP_958595.1 NC_005355_p40 hypothetical protein phrog_1330 tail protein tail 1 32167 37041
NP_958561.1 NC_005355_p6 repressor phrog_87 metallo-protease other -1 4004 4426
NP_958573.1 NC_005355_p18 antirepressor phrog_130 anti-repressor Ant transcription regulation 1 10354 11190
NP_958590.1 NC_005355_p35 major tail protein phrog_158 major tail protein tail 1 24361 24840
NP_958598.1 NC_005355_p43 hypothetical protein phrog_6664 unknown function unknown function 1 37850 38107
NP_958597.1 NC_005355_p42 hypothetical protein phrog_4325 holin lysis 1 37433 37840
NP_958581.1 NC_005355_p26 hypothetical protein phrog_4478 peptidase other 1 19148 19435
NP_958589.1 NC_005355_p34 hypothetical protein phrog_78 tail terminator connector 1 23990 24358
NP_958563.1 NC_005355_p8 cro repressor phrog_3 transcriptional repressor transcription regulation 1 4956 5159
NP_958586.1 NC_005355_p31 hypothetical protein phrog_132 head-tail adaptor connector 1 22781 23098