| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_005822 |
Definition |
Lactococcus phage phiLC3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
32172 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
51 |
%GC |
35.5 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| NP_996716.1 | NC_005822_p42 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 23864 | 24760 |
| NP_996678.1 | NC_005822_p4 | transcription regulator | phrog_4416 | transcriptional regulator | transcription regulation | 1 | 3010 | 3201 |
| NP_996689.1 | NC_005822_p15 | resolvase | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 8236 | 8625 |
| NP_996706.1 | NC_005822_p32 | MHP | phrog_10 | major head protein | head and packaging | 1 | 17525 | 18421 |
| NP_996702.1 | NC_005822_p28 | hypothetical protein | phrog_25292 | unknown function | unknown function | 1 | 14588 | 14746 |
| NP_996722.1 | NC_005822_p48 | LysB | phrog_291 | endolysin | lysis | 1 | 29507 | 30796 |
| NP_996718.1 | NC_005822_p44 | BPP | phrog_1220 | head protein | head and packaging | 1 | 25919 | 26950 |
| NP_996713.1 | NC_005822_p39 | hypothetical protein | phrog_1526 | unknown function | unknown function | 1 | 20671 | 20931 |
| NP_996721.1 | NC_005822_p47 | LysA | phrog_297 | holin | lysis | 1 | 29244 | 29510 |
| NP_996717.1 | NC_005822_p43 | hypothetical protein | phrog_538 | minor tail protein | tail | 1 | 24765 | 25922 |
| NP_996684.1 | NC_005822_p10 | hypothetical protein | phrog_252 | Bet-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 5042 | 5779 |
| NP_996695.1 | NC_005822_p21 | hypothetical protein | phrog_1083 | unknown function | unknown function | 1 | 11056 | 11394 |
| NP_996700.1 | NC_005822_p26 | hypothetical protein | phrog_26495 | unknown function | unknown function | 1 | 13205 | 13369 |
| NP_996699.1 | NC_005822_p25 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 12928 | 13215 |
| NP_996720.1 | NC_005822_p46 | NPS | phrog_2370 | neck passage structure | connector | 1 | 27201 | 29219 |
| NP_996694.1 | NC_005822_p20 | hypothetical protein | phrog_4000 | unknown function | unknown function | 1 | 10787 | 11056 |
| NP_996725.1 | NC_005822_p51 | hypothetical protein | phrog_11039 | unknown function | unknown function | 1 | 31803 | 32045 |
| NP_996680.1 | NC_005822_p6 | antirepressor | phrog_373 | anti-repressor | transcription regulation | 1 | 3466 | 4176 |
| NP_996682.1 | NC_005822_p8 | hypothetical protein | phrog_5257 | unknown function | unknown function | 1 | 4523 | 4771 |
| NP_996701.1 | NC_005822_p27 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 13362 | 14591 |
| NP_996704.1 | NC_005822_p30 | TerL | phrog_9 | terminase large subunit | head and packaging | 1 | 15575 | 16984 |
| NP_996697.1 | NC_005822_p23 | hypothetical protein | phrog_8 | transcriptional regulator | transcription regulation | 1 | 11708 | 12244 |
| NP_996711.1 | NC_005822_p37 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 19690 | 20025 |
| NP_996712.1 | NC_005822_p38 | MTP | phrog_117 | major tail protein | tail | 1 | 20036 | 20593 |
| NP_996724.1 | NC_005822_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31512 | 31775 |
| NP_996679.1 | NC_005822_p5 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 3222 | 3452 |
| NP_996687.1 | NC_005822_p13 | replication initiator protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 7385 | 7990 |
| NP_996707.1 | NC_005822_p33 | hypothetical protein | phrog_1539 | Arc-like repressor | transcription regulation | 1 | 18436 | 18735 |
| NP_996691.1 | NC_005822_p17 | hypothetical protein | phrog_4149 | unknown function | unknown function | 1 | 9065 | 9742 |
| NP_996681.1 | NC_005822_p7 | hypothetical protein | phrog_823 | unknown function | unknown function | 1 | 4189 | 4521 |
| NP_996675.1 | NC_005822_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 94 | 1218 |
| NP_996696.1 | NC_005822_p22 | hypothetical protein | phrog_11381 | unknown function | unknown function | 1 | 11391 | 11711 |
| NP_996690.1 | NC_005822_p16 | hypothetical protein | phrog_3109 | unknown function | unknown function | 1 | 8629 | 8868 |
| NP_996693.1 | NC_005822_p19 | dUTPase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 10365 | 10790 |
| NP_996705.1 | NC_005822_p31 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 17057 | 17521 |
| NP_996683.1 | NC_005822_p9 | transcription regulator | phrog_4416 | transcriptional regulator | transcription regulation | 1 | 4768 | 4941 |
| NP_996710.1 | NC_005822_p36 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 19453 | 19689 |
| NP_996715.1 | NC_005822_p41 | TMP | phrog_58 | tail length tape measure protein | tail | 1 | 21320 | 23851 |
| NP_996709.1 | NC_005822_p35 | hypothetical protein | phrog_501 | head closure Hc1 | connector | 1 | 19146 | 19460 |
| NP_996723.1 | NC_005822_p49 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30785 | 31024 |
| NP_996692.1 | NC_005822_p18 | hypothetical protein | phrog_121 | unknown function | unknown function | 1 | 9796 | 10368 |
| NP_996719.1 | NC_005822_p45 | hypothetical protein | phrog_689 | holin | lysis | 1 | 26964 | 27188 |
| NP_996685.1 | NC_005822_p11 | hypothetical protein | phrog_674 | unknown function | unknown function | 1 | 5781 | 6821 |
| NP_996688.1 | NC_005822_p14 | hypothetical protein | phrog_7699 | unknown function | unknown function | 1 | 7974 | 8231 |
| NP_996703.1 | NC_005822_p29 | hypothetical protein | phrog_2494 | minor head protein | head and packaging | 1 | 14760 | 15524 |
| NP_996698.1 | NC_005822_p24 | transcriptional activator | phrog_36 | transcriptional regulator | transcription regulation | 1 | 12328 | 12759 |
| NP_996708.1 | NC_005822_p34 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 18737 | 19135 |
| NP_996714.1 | NC_005822_p40 | hypothetical protein | phrog_1633 | unknown function | unknown function | 1 | 20946 | 21320 |
| NP_996686.1 | NC_005822_p12 | hypothetical protein | phrog_11769 | unknown function | unknown function | 1 | 7111 | 7371 |
| NP_996677.1 | NC_005822_p3 | phage repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 1921 | 2781 |
| NP_996676.1 | NC_005822_p2 | hypothetical protein | phrog_8545 | superinfection exclusion Sie-like | moron, auxiliary metabolic gene and host takeover | -1 | 1339 | 1860 |