Genomic map of Lactococcus phage phiLC3 (NC_005822)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_005822
Definition
Lactococcus phage phiLC3, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
32172
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
51
%GC
35.5
Number of singletons
2
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
NP_996716.1 NC_005822_p42 hypothetical protein phrog_33 distal tail protein Dit tail 1 23864 24760
NP_996678.1 NC_005822_p4 transcription regulator phrog_4416 transcriptional regulator transcription regulation 1 3010 3201
NP_996689.1 NC_005822_p15 resolvase phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 8236 8625
NP_996706.1 NC_005822_p32 MHP phrog_10 major head protein head and packaging 1 17525 18421
NP_996702.1 NC_005822_p28 hypothetical protein phrog_25292 unknown function unknown function 1 14588 14746
NP_996722.1 NC_005822_p48 LysB phrog_291 endolysin lysis 1 29507 30796
NP_996718.1 NC_005822_p44 BPP phrog_1220 head protein head and packaging 1 25919 26950
NP_996713.1 NC_005822_p39 hypothetical protein phrog_1526 unknown function unknown function 1 20671 20931
NP_996721.1 NC_005822_p47 LysA phrog_297 holin lysis 1 29244 29510
NP_996717.1 NC_005822_p43 hypothetical protein phrog_538 minor tail protein tail 1 24765 25922
NP_996684.1 NC_005822_p10 hypothetical protein phrog_252 Bet-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 5042 5779
NP_996695.1 NC_005822_p21 hypothetical protein phrog_1083 unknown function unknown function 1 11056 11394
NP_996700.1 NC_005822_p26 hypothetical protein phrog_26495 unknown function unknown function 1 13205 13369
NP_996699.1 NC_005822_p25 HNH endonuclease phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 12928 13215
NP_996720.1 NC_005822_p46 NPS phrog_2370 neck passage structure connector 1 27201 29219
NP_996694.1 NC_005822_p20 hypothetical protein phrog_4000 unknown function unknown function 1 10787 11056
NP_996725.1 NC_005822_p51 hypothetical protein phrog_11039 unknown function unknown function 1 31803 32045
NP_996680.1 NC_005822_p6 antirepressor phrog_373 anti-repressor transcription regulation 1 3466 4176
NP_996682.1 NC_005822_p8 hypothetical protein phrog_5257 unknown function unknown function 1 4523 4771
NP_996701.1 NC_005822_p27 portal protein phrog_104 portal protein head and packaging 1 13362 14591
NP_996704.1 NC_005822_p30 TerL phrog_9 terminase large subunit head and packaging 1 15575 16984
NP_996697.1 NC_005822_p23 hypothetical protein phrog_8 transcriptional regulator transcription regulation 1 11708 12244
NP_996711.1 NC_005822_p37 hypothetical protein phrog_123 tail terminator connector 1 19690 20025
NP_996712.1 NC_005822_p38 MTP phrog_117 major tail protein tail 1 20036 20593
NP_996724.1 NC_005822_p50 hypothetical protein singleton unknown function unknown function 1 31512 31775
NP_996679.1 NC_005822_p5 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 3222 3452
NP_996687.1 NC_005822_p13 replication initiator protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 7385 7990
NP_996707.1 NC_005822_p33 hypothetical protein phrog_1539 Arc-like repressor transcription regulation 1 18436 18735
NP_996691.1 NC_005822_p17 hypothetical protein phrog_4149 unknown function unknown function 1 9065 9742
NP_996681.1 NC_005822_p7 hypothetical protein phrog_823 unknown function unknown function 1 4189 4521
NP_996675.1 NC_005822_p1 integrase phrog_1 integrase integration and excision -1 94 1218
NP_996696.1 NC_005822_p22 hypothetical protein phrog_11381 unknown function unknown function 1 11391 11711
NP_996690.1 NC_005822_p16 hypothetical protein phrog_3109 unknown function unknown function 1 8629 8868
NP_996693.1 NC_005822_p19 dUTPase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 10365 10790
NP_996705.1 NC_005822_p31 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 17057 17521
NP_996683.1 NC_005822_p9 transcription regulator phrog_4416 transcriptional regulator transcription regulation 1 4768 4941
NP_996710.1 NC_005822_p36 hypothetical protein phrog_387 neck protein connector 1 19453 19689
NP_996715.1 NC_005822_p41 TMP phrog_58 tail length tape measure protein tail 1 21320 23851
NP_996709.1 NC_005822_p35 hypothetical protein phrog_501 head closure Hc1 connector 1 19146 19460
NP_996723.1 NC_005822_p49 hypothetical protein singleton unknown function unknown function -1 30785 31024
NP_996692.1 NC_005822_p18 hypothetical protein phrog_121 unknown function unknown function 1 9796 10368
NP_996719.1 NC_005822_p45 hypothetical protein phrog_689 holin lysis 1 26964 27188
NP_996685.1 NC_005822_p11 hypothetical protein phrog_674 unknown function unknown function 1 5781 6821
NP_996688.1 NC_005822_p14 hypothetical protein phrog_7699 unknown function unknown function 1 7974 8231
NP_996703.1 NC_005822_p29 hypothetical protein phrog_2494 minor head protein head and packaging 1 14760 15524
NP_996698.1 NC_005822_p24 transcriptional activator phrog_36 transcriptional regulator transcription regulation 1 12328 12759
NP_996708.1 NC_005822_p34 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 18737 19135
NP_996714.1 NC_005822_p40 hypothetical protein phrog_1633 unknown function unknown function 1 20946 21320
NP_996686.1 NC_005822_p12 hypothetical protein phrog_11769 unknown function unknown function 1 7111 7371
NP_996677.1 NC_005822_p3 phage repressor phrog_4 transcriptional repressor transcription regulation -1 1921 2781
NP_996676.1 NC_005822_p2 hypothetical protein phrog_8545 superinfection exclusion Sie-like moron, auxiliary metabolic gene and host takeover -1 1339 1860