Genomic map of Escherichia virus T1 (NC_005833)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_005833
Definition
Enterobacteria phage T1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tunavirinae; Tunavirus.
DB of origin
REFSEQ
Length
48836
Host Name
Escherichia coli
Host domain
Bacteria
Is prophage?
undef
Number of proteins
78
%GC
45.55
Number of singletons
2
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_003883.1 NC_005833_p17 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other 1 5962 6534
YP_003923.1 NC_005833_p57 ATP-dependent helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 36525 38543
YP_003880.1 NC_005833_p14 polynucleotide kinase/phosphatase phrog_415 polynucleotide kinase other 1 4948 5478
YP_003876.1 NC_005833_p10 hypothetical protein phrog_10580 unknown function unknown function 1 3619 3993
YP_003932.1 NC_005833_p66 holin phrog_2877 holin lysis 1 42878 43093
YP_003885.1 NC_005833_p19 hypothetical protein phrog_9709 unknown function unknown function 1 6813 7157
YP_003897.1 NC_005833_p31 hypothetical protein phrog_1989 unknown function unknown function 1 14282 15049
YP_003936.1 NC_005833_p70 hypothetical protein phrog_2373 DNA helicase DNA, RNA and nucleotide metabolism -1 44517 46085
YP_003903.1 NC_005833_p37 hypothetical protein phrog_179 tail terminator connector 1 17689 18087
YP_003869.1 NC_005833_p3 hypothetical protein phrog_11449 unknown function unknown function 1 1532 1762
YP_003887.1 NC_005833_p21 hypothetical protein phrog_4927 unknown function unknown function 1 7387 7590
YP_003877.1 NC_005833_p11 hypothetical protein singleton unknown function unknown function 1 4047 4157
YP_003944.1 NC_005833_p78 hypothetical protein phrog_11577 unknown function unknown function -1 48303 48674
YP_003893.1 NC_005833_p27 portal protein phrog_146 portal protein head and packaging 1 10583 11866
YP_003872.1 NC_005833_p6 hypothetical protein phrog_8628 unknown function unknown function 1 2099 2272
YP_003895.1 NC_005833_p29 major head subunit precursor phrog_530 head maturation protease head and packaging 1 12620 13732
YP_003922.1 NC_005833_p56 hypothetical protein phrog_2856 transcriptional regulator transcription regulation -1 35979 36431
YP_003908.1 NC_005833_p42 minor tail protein phrog_14 minor tail protein tail 1 22423 22776
YP_003889.1 NC_005833_p23 hypothetical protein phrog_2919 unknown function unknown function 1 7939 8082
YP_003939.1 NC_005833_p73 hypothetical protein phrog_9085 unknown function unknown function -1 47118 47327
YP_003907.1 NC_005833_p41 tail tape measure protein phrog_24 tail length tape measure protein tail 1 19547 22420
YP_003902.1 NC_005833_p36 hypothetical protein phrog_169 tail completion or Neck1 protein connector 1 17256 17699
YP_003879.1 NC_005833_p13 hypothetical protein phrog_10642 unknown function unknown function 1 4418 4864
YP_003924.1 NC_005833_p58 hypothetical protein phrog_824 unknown function unknown function 1 38540 38956
YP_003868.1 NC_005833_p2 hypothetical protein phrog_18675 unknown function unknown function 1 1127 1453
YP_003892.1 NC_005833_p26 terminase large subunit phrog_38 terminase large subunit head and packaging 1 8945 10528
YP_003914.1 NC_005833_p48 hypothetical protein phrog_425 membrane associated protein moron, auxiliary metabolic gene and host takeover 1 28912 29601
YP_003911.1 NC_005833_p45 tail assembly protein phrog_32 tail assembly protein tail 1 24366 24965
YP_003943.1 NC_005833_p77 hypothetical protein phrog_6503 unknown function unknown function -1 48110 48310
YP_003940.1 NC_005833_p74 hypothetical protein phrog_4344 unknown function unknown function -1 47331 47555
YP_003873.1 NC_005833_p7 hypothetical protein phrog_9595 unknown function unknown function 1 2344 2832
YP_003906.1 NC_005833_p40 hypothetical protein phrog_680 tail length tape measure protein tail 1 19339 19506
YP_003867.1 NC_005833_p1 hypothetical protein phrog_11083 unknown function unknown function 1 539 1114
YP_003899.1 NC_005833_p33 hypothetical protein phrog_2716 unknown function unknown function 1 16150 16437
YP_003919.1 NC_005833_p53 tail fiber phrog_1591 tail fiber protein tail -1 32695 34881
YP_003896.1 NC_005833_p30 hypothetical protein phrog_1989 unknown function unknown function 1 13744 14220
YP_003900.1 NC_005833_p34 hypothetical protein phrog_302 virion structural protein head and packaging 1 16482 16892
YP_003901.1 NC_005833_p35 hypothetical protein phrog_161 head closure Hc1 connector 1 16892 17263
YP_003913.1 NC_005833_p47 hypothetical protein phrog_557 outer membrane protein other 1 28607 28912
YP_003874.1 NC_005833_p8 hypothetical protein phrog_7116 unknown function unknown function 1 2904 3389
YP_003933.1 NC_005833_p67 endolysin phrog_7 endolysin lysis 1 43093 43581
YP_003910.1 NC_005833_p44 minor tail protein phrog_30 minor tail protein tail 1 23635 24369
YP_003870.1 NC_005833_p4 hypothetical protein phrog_6080 unknown function unknown function 1 1768 1995
YP_003891.1 NC_005833_p25 terminase small subunit phrog_606 terminase small subunit head and packaging 1 8396 8920
YP_003905.1 NC_005833_p39 hypothetical protein phrog_569 tail length tape measure protein tail 1 18872 19189
YP_003912.1 NC_005833_p46 tail fiber protein phrog_31 central tail fiber J tail 1 25043 28561
YP_003926.1 NC_005833_p60 hypothetical protein phrog_2676 unknown function unknown function 1 39734 39985
YP_003888.1 NC_005833_p22 hypothetical protein phrog_6666 unknown function unknown function 1 7755 7916
YP_003890.1 NC_005833_p24 hypothetical protein phrog_5976 unknown function unknown function 1 8084 8311
YP_003927.1 NC_005833_p61 hypothetical protein phrog_2180 unknown function unknown function 1 40052 40261
YP_003878.1 NC_005833_p12 hypothetical protein phrog_11330 unknown function unknown function 1 4142 4360
YP_003929.1 NC_005833_p63 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 40822 41955
YP_003882.1 NC_005833_p16 hypothetical protein phrog_4578 HNH endonuclease DNA, RNA and nucleotide metabolism 1 5702 5959
YP_003886.1 NC_005833_p20 hypothetical protein phrog_303 unknown function unknown function 1 7157 7387
YP_003928.1 NC_005833_p62 hypothetical protein phrog_4596 unknown function unknown function 1 40456 40743
YP_003941.1 NC_005833_p75 hypothetical protein phrog_3955 unknown function unknown function -1 47633 47776
YP_003904.1 NC_005833_p38 major tail protein phrog_584 major tail protein tail 1 18090 18758
YP_003942.1 NC_005833_p76 hypothetical protein phrog_10555 unknown function unknown function -1 47773 48093
YP_003934.1 NC_005833_p68 hypothetical protein phrog_1804 Rz-like spanin lysis 1 43581 43982
YP_003916.1 NC_005833_p50 exodeoxyribonuclease VIII phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism 1 30378 31442
YP_003875.1 NC_005833_p9 hypothetical protein phrog_5579 unknown function unknown function 1 3389 3538
YP_003909.1 NC_005833_p43 minor tail protein phrog_18 minor tail protein tail 1 22856 23638
YP_003937.1 NC_005833_p71 endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 46085 46624
YP_003898.1 NC_005833_p32 hypothetical protein phrog_264 major head protein head and packaging 1 15140 16099
YP_003938.1 NC_005833_p72 hypothetical protein phrog_2684 unknown function unknown function -1 46621 47037
YP_003931.1 NC_005833_p65 hypothetical protein phrog_4788 unknown function unknown function 1 42583 42759
YP_003925.1 NC_005833_p59 Dam methylase phrog_111 DNA methyltransferase other 1 39024 39737
YP_003930.1 NC_005833_p64 endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 42028 42510
YP_003871.1 NC_005833_p5 hypothetical protein phrog_25570 unknown function unknown function 1 1992 2102
YP_003921.1 NC_005833_p55 DNA primase phrog_510 DNA primase DNA, RNA and nucleotide metabolism -1 34982 35902
YP_003920.1 NC_005833_p54 hypothetical protein singleton unknown function unknown function -1 34791 34934
YP_003915.1 NC_005833_p49 hypothetical protein phrog_1119 Cor superinfection exclusion protein moron, auxiliary metabolic gene and host takeover -1 29623 29850
YP_003881.1 NC_005833_p15 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 5465 5959
YP_003884.1 NC_005833_p18 hypothetical protein phrog_10456 unknown function unknown function 1 6607 6816
YP_003918.1 NC_005833_p52 hypothetical protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 32211 32633
YP_003894.1 NC_005833_p28 hypothetical protein phrog_324 head morphogenesis head and packaging 1 11856 12617
YP_003917.1 NC_005833_p51 recombination protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 31484 32164
YP_003935.1 NC_005833_p69 hypothetical protein phrog_2794 unknown function unknown function -1 44105 44512