| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_005833 |
Definition |
Enterobacteria phage T1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tunavirinae; Tunavirus. |
DB of origin |
REFSEQ |
Length |
48836 |
Host Name |
Escherichia coli |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
78 |
%GC |
45.55 |
Number of singletons |
2 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_003883.1 | NC_005833_p17 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 5962 | 6534 |
| YP_003923.1 | NC_005833_p57 | ATP-dependent helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 36525 | 38543 |
| YP_003880.1 | NC_005833_p14 | polynucleotide kinase/phosphatase | phrog_415 | polynucleotide kinase | other | 1 | 4948 | 5478 |
| YP_003876.1 | NC_005833_p10 | hypothetical protein | phrog_10580 | unknown function | unknown function | 1 | 3619 | 3993 |
| YP_003932.1 | NC_005833_p66 | holin | phrog_2877 | holin | lysis | 1 | 42878 | 43093 |
| YP_003885.1 | NC_005833_p19 | hypothetical protein | phrog_9709 | unknown function | unknown function | 1 | 6813 | 7157 |
| YP_003897.1 | NC_005833_p31 | hypothetical protein | phrog_1989 | unknown function | unknown function | 1 | 14282 | 15049 |
| YP_003936.1 | NC_005833_p70 | hypothetical protein | phrog_2373 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 44517 | 46085 |
| YP_003903.1 | NC_005833_p37 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 17689 | 18087 |
| YP_003869.1 | NC_005833_p3 | hypothetical protein | phrog_11449 | unknown function | unknown function | 1 | 1532 | 1762 |
| YP_003887.1 | NC_005833_p21 | hypothetical protein | phrog_4927 | unknown function | unknown function | 1 | 7387 | 7590 |
| YP_003877.1 | NC_005833_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4047 | 4157 |
| YP_003944.1 | NC_005833_p78 | hypothetical protein | phrog_11577 | unknown function | unknown function | -1 | 48303 | 48674 |
| YP_003893.1 | NC_005833_p27 | portal protein | phrog_146 | portal protein | head and packaging | 1 | 10583 | 11866 |
| YP_003872.1 | NC_005833_p6 | hypothetical protein | phrog_8628 | unknown function | unknown function | 1 | 2099 | 2272 |
| YP_003895.1 | NC_005833_p29 | major head subunit precursor | phrog_530 | head maturation protease | head and packaging | 1 | 12620 | 13732 |
| YP_003922.1 | NC_005833_p56 | hypothetical protein | phrog_2856 | transcriptional regulator | transcription regulation | -1 | 35979 | 36431 |
| YP_003908.1 | NC_005833_p42 | minor tail protein | phrog_14 | minor tail protein | tail | 1 | 22423 | 22776 |
| YP_003889.1 | NC_005833_p23 | hypothetical protein | phrog_2919 | unknown function | unknown function | 1 | 7939 | 8082 |
| YP_003939.1 | NC_005833_p73 | hypothetical protein | phrog_9085 | unknown function | unknown function | -1 | 47118 | 47327 |
| YP_003907.1 | NC_005833_p41 | tail tape measure protein | phrog_24 | tail length tape measure protein | tail | 1 | 19547 | 22420 |
| YP_003902.1 | NC_005833_p36 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 17256 | 17699 |
| YP_003879.1 | NC_005833_p13 | hypothetical protein | phrog_10642 | unknown function | unknown function | 1 | 4418 | 4864 |
| YP_003924.1 | NC_005833_p58 | hypothetical protein | phrog_824 | unknown function | unknown function | 1 | 38540 | 38956 |
| YP_003868.1 | NC_005833_p2 | hypothetical protein | phrog_18675 | unknown function | unknown function | 1 | 1127 | 1453 |
| YP_003892.1 | NC_005833_p26 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 8945 | 10528 |
| YP_003914.1 | NC_005833_p48 | hypothetical protein | phrog_425 | membrane associated protein | moron, auxiliary metabolic gene and host takeover | 1 | 28912 | 29601 |
| YP_003911.1 | NC_005833_p45 | tail assembly protein | phrog_32 | tail assembly protein | tail | 1 | 24366 | 24965 |
| YP_003943.1 | NC_005833_p77 | hypothetical protein | phrog_6503 | unknown function | unknown function | -1 | 48110 | 48310 |
| YP_003940.1 | NC_005833_p74 | hypothetical protein | phrog_4344 | unknown function | unknown function | -1 | 47331 | 47555 |
| YP_003873.1 | NC_005833_p7 | hypothetical protein | phrog_9595 | unknown function | unknown function | 1 | 2344 | 2832 |
| YP_003906.1 | NC_005833_p40 | hypothetical protein | phrog_680 | tail length tape measure protein | tail | 1 | 19339 | 19506 |
| YP_003867.1 | NC_005833_p1 | hypothetical protein | phrog_11083 | unknown function | unknown function | 1 | 539 | 1114 |
| YP_003899.1 | NC_005833_p33 | hypothetical protein | phrog_2716 | unknown function | unknown function | 1 | 16150 | 16437 |
| YP_003919.1 | NC_005833_p53 | tail fiber | phrog_1591 | tail fiber protein | tail | -1 | 32695 | 34881 |
| YP_003896.1 | NC_005833_p30 | hypothetical protein | phrog_1989 | unknown function | unknown function | 1 | 13744 | 14220 |
| YP_003900.1 | NC_005833_p34 | hypothetical protein | phrog_302 | virion structural protein | head and packaging | 1 | 16482 | 16892 |
| YP_003901.1 | NC_005833_p35 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 16892 | 17263 |
| YP_003913.1 | NC_005833_p47 | hypothetical protein | phrog_557 | outer membrane protein | other | 1 | 28607 | 28912 |
| YP_003874.1 | NC_005833_p8 | hypothetical protein | phrog_7116 | unknown function | unknown function | 1 | 2904 | 3389 |
| YP_003933.1 | NC_005833_p67 | endolysin | phrog_7 | endolysin | lysis | 1 | 43093 | 43581 |
| YP_003910.1 | NC_005833_p44 | minor tail protein | phrog_30 | minor tail protein | tail | 1 | 23635 | 24369 |
| YP_003870.1 | NC_005833_p4 | hypothetical protein | phrog_6080 | unknown function | unknown function | 1 | 1768 | 1995 |
| YP_003891.1 | NC_005833_p25 | terminase small subunit | phrog_606 | terminase small subunit | head and packaging | 1 | 8396 | 8920 |
| YP_003905.1 | NC_005833_p39 | hypothetical protein | phrog_569 | tail length tape measure protein | tail | 1 | 18872 | 19189 |
| YP_003912.1 | NC_005833_p46 | tail fiber protein | phrog_31 | central tail fiber J | tail | 1 | 25043 | 28561 |
| YP_003926.1 | NC_005833_p60 | hypothetical protein | phrog_2676 | unknown function | unknown function | 1 | 39734 | 39985 |
| YP_003888.1 | NC_005833_p22 | hypothetical protein | phrog_6666 | unknown function | unknown function | 1 | 7755 | 7916 |
| YP_003890.1 | NC_005833_p24 | hypothetical protein | phrog_5976 | unknown function | unknown function | 1 | 8084 | 8311 |
| YP_003927.1 | NC_005833_p61 | hypothetical protein | phrog_2180 | unknown function | unknown function | 1 | 40052 | 40261 |
| YP_003878.1 | NC_005833_p12 | hypothetical protein | phrog_11330 | unknown function | unknown function | 1 | 4142 | 4360 |
| YP_003929.1 | NC_005833_p63 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 40822 | 41955 |
| YP_003882.1 | NC_005833_p16 | hypothetical protein | phrog_4578 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 5702 | 5959 |
| YP_003886.1 | NC_005833_p20 | hypothetical protein | phrog_303 | unknown function | unknown function | 1 | 7157 | 7387 |
| YP_003928.1 | NC_005833_p62 | hypothetical protein | phrog_4596 | unknown function | unknown function | 1 | 40456 | 40743 |
| YP_003941.1 | NC_005833_p75 | hypothetical protein | phrog_3955 | unknown function | unknown function | -1 | 47633 | 47776 |
| YP_003904.1 | NC_005833_p38 | major tail protein | phrog_584 | major tail protein | tail | 1 | 18090 | 18758 |
| YP_003942.1 | NC_005833_p76 | hypothetical protein | phrog_10555 | unknown function | unknown function | -1 | 47773 | 48093 |
| YP_003934.1 | NC_005833_p68 | hypothetical protein | phrog_1804 | Rz-like spanin | lysis | 1 | 43581 | 43982 |
| YP_003916.1 | NC_005833_p50 | exodeoxyribonuclease VIII | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 30378 | 31442 |
| YP_003875.1 | NC_005833_p9 | hypothetical protein | phrog_5579 | unknown function | unknown function | 1 | 3389 | 3538 |
| YP_003909.1 | NC_005833_p43 | minor tail protein | phrog_18 | minor tail protein | tail | 1 | 22856 | 23638 |
| YP_003937.1 | NC_005833_p71 | endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 46085 | 46624 |
| YP_003898.1 | NC_005833_p32 | hypothetical protein | phrog_264 | major head protein | head and packaging | 1 | 15140 | 16099 |
| YP_003938.1 | NC_005833_p72 | hypothetical protein | phrog_2684 | unknown function | unknown function | -1 | 46621 | 47037 |
| YP_003931.1 | NC_005833_p65 | hypothetical protein | phrog_4788 | unknown function | unknown function | 1 | 42583 | 42759 |
| YP_003925.1 | NC_005833_p59 | Dam methylase | phrog_111 | DNA methyltransferase | other | 1 | 39024 | 39737 |
| YP_003930.1 | NC_005833_p64 | endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 42028 | 42510 |
| YP_003871.1 | NC_005833_p5 | hypothetical protein | phrog_25570 | unknown function | unknown function | 1 | 1992 | 2102 |
| YP_003921.1 | NC_005833_p55 | DNA primase | phrog_510 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 34982 | 35902 |
| YP_003920.1 | NC_005833_p54 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34791 | 34934 |
| YP_003915.1 | NC_005833_p49 | hypothetical protein | phrog_1119 | Cor superinfection exclusion protein | moron, auxiliary metabolic gene and host takeover | -1 | 29623 | 29850 |
| YP_003881.1 | NC_005833_p15 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 5465 | 5959 |
| YP_003884.1 | NC_005833_p18 | hypothetical protein | phrog_10456 | unknown function | unknown function | 1 | 6607 | 6816 |
| YP_003918.1 | NC_005833_p52 | hypothetical protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 32211 | 32633 |
| YP_003894.1 | NC_005833_p28 | hypothetical protein | phrog_324 | head morphogenesis | head and packaging | 1 | 11856 | 12617 |
| YP_003917.1 | NC_005833_p51 | recombination protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 31484 | 32164 |
| YP_003935.1 | NC_005833_p69 | hypothetical protein | phrog_2794 | unknown function | unknown function | -1 | 44105 | 44512 |