Genomic map of Escherichia virus P1 (NC_005856)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_005856
Definition
Enterobacteria phage P1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Punavirus.
DB of origin
REFSEQ
Length
94800
Host Name
Escherichia coli
Host domain
Bacteria
Is prophage?
undef
Number of proteins
110
%GC
47.31
Number of singletons
7
Number of paralogs
4

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_006557.1 NC_005856_p87 morphogenetic function phrog_1962 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 81449 82150
YP_006522.1 NC_005856_p52 baseplate structural protein phrog_1120 tail tube protein tail -1 53454 53963
YP_006538.1 NC_005856_p68 lipoprotein singleton unknown function unknown function -1 69472 69849
YP_006479.1 NC_005856_p9 defense against restriction phrog_1685 unknown function unknown function -1 10469 17236
YP_006507.1 NC_005856_p37 structural injection transglycosylase phrog_2533 unknown function unknown function -1 40988 44410
YP_006500.1 NC_005856_p30 assembly or structural protein of tail fibers phrog_136 tail fiber assembly protein tail 1 33785 34318
YP_006487.1 NC_005856_p17 IS1 transposition protein InsB phrog_720 transposase integration and excision -1 22641 23144
YP_006529.1 NC_005856_p59 product acts to initiate replication from oriR, to repress its own synthesis and to pair sets of iterated binding sites so as to control plasmid copy number phrog_775 replication helicase DNA, RNA and nucleotide metabolism -1 61771 62631
YP_006578.1 NC_005856_p108 C1 repressor inactivator phrog_2079 unknown function unknown function -1 94193 94402
YP_006484.1 NC_005856_p14 lysozyme phrog_7 endolysin lysis -1 20325 20882
YP_006472.1 NC_005856_p2 cyclization recombinase phrog_1 integrase integration and excision 1 436 1467
YP_006544.1 NC_005856_p74 function unknown, possible glycosyltransferase phrog_2518 unknown function unknown function 1 72659 73657
YP_006564.1 NC_005856_p94 hypothetical protein phrog_31823 unknown function unknown function 1 86099 86212
YP_006541.1 NC_005856_p71 tellurite or colicin resistance or inhibition of cell division accessory protein phrog_1470 TciB-like inhibition of cell division or resistance to colicin moron, auxiliary metabolic gene and host takeover 1 70658 70822
YP_006570.1 NC_005856_p100 antitoxin of P1 addiction system phrog_375 Phd-like antitoxin moron, auxiliary metabolic gene and host takeover 1 88046 88267
YP_006548.1 NC_005856_p78 tail stability phrog_1906 tail protein tail -1 76119 76847
YP_006497.1 NC_005856_p27 holin phrog_1527 holin lysis -1 30854 31183
YP_006494.1 NC_005856_p24 defense against restriction phrog_1926 released from the phage upon host infection other -1 27904 29823
YP_006563.1 NC_005856_p93 morphogenetic function phrog_4403 unknown function unknown function 1 85554 85916
YP_006566.1 NC_005856_p96 hypothetical protein singleton unknown function unknown function 1 86403 86543
YP_006504.1 NC_005856_p34 baseplate or tail tube structural protein phrog_2015 tail tube protein tail -1 38366 39202
YP_006568.1 NC_005856_p98 LexA regulated function phrog_6164 unknown function unknown function -1 86837 87409
YP_006536.1 NC_005856_p66 hypothetical recombination associated protein of RdgC family phrog_724 exonuclease recombination-associated DNA, RNA and nucleotide metabolism 1 65510 66415
YP_006519.1 NC_005856_p49 possibly associated with lytic replication phrog_3732 unknown function unknown function 1 51740 52444
YP_006549.1 NC_005856_p79 tail stability phrog_1722 tail protein tail -1 76851 78068
YP_006569.1 NC_005856_p99 DNA repair phrog_811 UmuD-like protein DNA, RNA and nucleotide metabolism 1 87584 87973
YP_006486.1 NC_005856_p16 hypothetical protein phrog_2326 unknown function unknown function 1 21569 22531
YP_006503.1 NC_005856_p33 structural or assembly protein of tail fibers phrog_2032 tail fiber assembly protein tail -1 37853 38287
YP_006517.1 NC_005856_p47 product can kill host phrog_63 anti-repressor Ant transcription regulation 1 49896 50696
YP_006565.1 NC_005856_p95 hypothetical protein singleton unknown function unknown function 1 86228 86425
YP_006511.1 NC_005856_p41 superimmunity phrog_14355 unknown function unknown function -1 46786 47580
YP_006558.1 NC_005856_p88 morphogenetic function phrog_3177 unknown function unknown function 1 82232 82450
YP_006530.1 NC_005856_p60 hypothetical protein phrog_1453 unknown function unknown function -1 62950 63342
YP_006542.1 NC_005856_p72 tellurite or colicin resistance or inhibition of cell division accessory protein phrog_23152 unknown function unknown function 1 70822 70929
YP_006471.1 NC_005856_p1 cre associated function phrog_804 unknown function unknown function 1 207 428
YP_006501.1 NC_005856_p31 assembly or structural protein of tail fibers phrog_136 tail fiber assembly protein tail -1 34347 34874
YP_006572.1 NC_005856_p102 hypothetical protein phrog_3345 unknown function unknown function 1 88631 88831
YP_006476.1 NC_005856_p6 restriction component of type III restriction-modification system EcoPI phrog_11902 unknown function unknown function -1 3544 6456
YP_006515.1 NC_005856_p45 product antagonizes C1 repression by formation of Ant1/Ant2/C1 complex phrog_63 anti-repressor Ant transcription regulation 1 48688 49731
YP_006496.1 NC_005856_p26 lysis determinant, LydA antagonist phrog_1898 lysis determining protein lysis -1 30414 30857
YP_006551.1 NC_005856_p81 morphogenetic function phrog_54 DksA-like zinc-finger protein other 1 78602 78847
YP_006483.1 NC_005856_p13 holin phrog_21930 holin lysis -1 20078 20332
YP_006508.1 NC_005856_p38 morphogenetic function phrog_1854 PmgB-like head morphogenesis head and packaging -1 44492 45373
YP_006560.1 NC_005856_p90 P1 acid phosphatase phrog_415 polynucleotide kinase other 1 83787 84293
YP_006571.1 NC_005856_p101 toxin of P1 addiction system phrog_577 Doc-like toxin moron, auxiliary metabolic gene and host takeover 1 88267 88647
YP_006510.1 NC_005856_p40 morphogenetic function phrog_1851 PmgC-like head morphogenesis head and packaging -1 46010 46576
YP_006520.1 NC_005856_p50 possibly associated with lytic replication phrog_16230 replication protein DNA, RNA and nucleotide metabolism 1 52444 52908
YP_006474.1 NC_005856_p4 recombination enhancement function phrog_2321 Ref-like RecA filament endonuclease DNA, RNA and nucleotide metabolism 1 2077 2637
YP_006481.1 NC_005856_p11 head processing, kinase/phosphatase probably involved in activation of host protease phrog_1801 tail fiber protein tail 1 19014 20033
YP_006556.1 NC_005856_p86 serine/threonine protein phosphatase, by homology phrog_246 NinI-like serine-threonine phosphatase other 1 80760 81452
YP_006537.1 NC_005856_p67 bifunctional DNA methyltransferase phrog_116 DNA methyltransferase other 1 66412 68676
YP_006498.1 NC_005856_p28 holin by homology phrog_1527 holin lysis -1 31251 31532
YP_006490.1 NC_005856_p20 possible repressor phrog_2292 unknown function unknown function -1 24244 24552
YP_006567.1 NC_005856_p97 region of aa 9-73 61 pct identical to region of aa 4-68 of theta subunit of E. coli DNA polymerase III phrog_1105 DNA polymerase III theta subunit DNA, RNA and nucleotide metabolism 1 86567 86830
YP_006552.1 NC_005856_p82 norphogenetic function phrog_2363 unknown function unknown function 1 78850 79428
YP_006577.1 NC_005856_p107 thermosensitive phage repressor protein phrog_1678 unknown function unknown function -1 93231 94082
YP_006532.1 NC_005856_p62 possible periplasmic function phrog_89 Rz-like spanin lysis -1 63520 63942
YP_006514.1 NC_005856_p44 inhibitor of cell division phrog_1426 unknown function unknown function 1 48470 48691
YP_006554.1 NC_005856_p84 morphogenetic function phrog_4603 alpha-2;3-sialyltransferase other 1 79592 80254
YP_006475.1 NC_005856_p5 maturation control phrog_1837 unknown function unknown function 1 2716 3468
YP_006545.1 NC_005856_p75 baseplate phrog_430 baseplate hub subunit and tail lysozyme tail -1 73704 74336
YP_006546.1 NC_005856_p76 tail length phrog_1390 tail protein tail -1 74329 75345
YP_006473.1 NC_005856_p3 establishment of lysogeny, phrog_1968 unknown function unknown function 1 1518 1829
YP_006518.1 NC_005856_p48 product acts to initiate replication at oriL that is internal to repL phrog_2418 unknown function unknown function 1 50726 51571
YP_006488.1 NC_005856_p18 IS1 transposition protein InsA phrog_1191 transposase integration and excision -1 23063 23338
YP_006502.1 NC_005856_p32 major structural protein of tail fibers phrog_454 tail fiber protein tail -1 34878 37841
YP_006562.1 NC_005856_p92 morphogenetic function phrog_21459 unknown function unknown function 1 85222 85557
YP_006533.1 NC_005856_p63 hypothetical protein phrog_1559 unknown function unknown function -1 63982 64827
YP_006512.1 NC_005856_p42 superimmunity accessory function phrog_14329 unknown function unknown function -1 47573 47908
YP_006505.1 NC_005856_p35 baseplate structural protein phrog_1369 baseplate protein tail -1 39202 40635
YP_006576.1 NC_005856_p106 DNA pacase B subunit phrog_2 terminase large subunit head and packaging 1 91722 93206
YP_006550.1 NC_005856_p80 baseplate phrog_1269 baseplate wedge subunit tail -1 78078 78455
YP_006575.1 NC_005856_p105 P1 packase subunit phrog_1711 terminase head and packaging 1 90529 91722
YP_006521.1 NC_005856_p51 morphogenetic function phrog_7349 unknown function unknown function -1 53074 53370
YP_006540.1 NC_005856_p70 tellurite or colicin resistance or inhibition of cell division phrog_632 tellurite resistance moron, auxiliary metabolic gene and host takeover 1 70233 70658
YP_006547.1 NC_005856_p77 baseplate or tail stability phrog_1767 baseplate protein tail -1 75347 76132
YP_006480.1 NC_005856_p10 portal protein phrog_1497 portal protein head and packaging 1 17312 19021
YP_006573.1 NC_005856_p103 hypothetical protein phrog_96 HNH endonuclease DNA, RNA and nucleotide metabolism 1 88859 89902
YP_006559.1 NC_005856_p89 morphogenetic function phrog_1660 PmgS-like head morphogenesis head and packaging 1 82452 83714
YP_006531.1 NC_005856_p61 membrane lipoprotein precursor, by homology phrog_30284 Rz-like spanin lysis -1 63354 63686
YP_006580.1 NC_005856_p110 immunity C function singleton unknown function unknown function -1 94482 94595
YP_006523.1 NC_005856_p53 morphogenetic function phrog_1114 PmgG-like head morphogenesis head and packaging -1 53975 54556
YP_006526.1 NC_005856_p56 major capsid protein phrog_1014 unknown function unknown function -1 57067 58773
YP_006513.1 NC_005856_p43 superimmunity accessory function singleton unknown function unknown function -1 47912 48070
YP_006499.1 NC_005856_p29 site-specific recombinase involved in C-segment inversion phrog_125 DNA invertase DNA, RNA and nucleotide metabolism 1 31660 32220
YP_006553.1 NC_005856_p83 morphogenetic function phrog_2350 unknown function unknown function 1 79495 79650
YP_006543.1 NC_005856_p73 replicative DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 71295 72659
YP_006555.1 NC_005856_p85 morphogenetic function phrog_2111 unknown function unknown function 1 80152 80778
YP_006527.1 NC_005856_p57 encodes ParB/SopB family protein involved in active partitioning of P1 plasmid prophage at cell division phrog_1146 ParB-like partition protein DNA, RNA and nucleotide metabolism -1 58999 60000
YP_006579.1 NC_005856_p109 immunity C function phrog_35478 unknown function unknown function -1 94368 94463
YP_006516.1 NC_005856_p46 product antagonizes C1 repression by formation of Ant1/Ant2/C1 complex phrog_63 anti-repressor Ant transcription regulation 1 48937 49731
YP_006539.1 NC_005856_p69 hypothetical protein phrog_14500 unknown function unknown function -1 69850 70041
YP_006525.1 NC_005856_p55 sheath structural protein phrog_1036 tail sheath tail -1 55417 57006
YP_006528.1 NC_005856_p58 encodes ParA/SopA family protein involved in active partitioning of P1 plasmid prophage at cell division phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism -1 60017 61213
YP_006495.1 NC_005856_p25 hypothetical protein phrog_1620 Hdf-like antirestriction moron, auxiliary metabolic gene and host takeover -1 29825 30436
YP_006493.1 NC_005856_p23 hypothetical protein phrog_1855 DdrA-like anti-restriction protein moron, auxiliary metabolic gene and host takeover -1 27542 27907
YP_006524.1 NC_005856_p54 baseplate or tail tube phrog_1053 unknown function unknown function -1 54592 55407
YP_006482.1 NC_005856_p12 antiholin singleton unknown function unknown function -1 20013 20228
YP_006492.1 NC_005856_p22 hypothetical protein singleton unknown function unknown function 1 26577 26975
YP_006574.1 NC_005856_p104 Late promoter activating protein phrog_1704 Lpa-like transcriptional activator transcription regulation 1 89991 90443
YP_006478.1 NC_005856_p8 hypothetical protein phrog_1629 Ulx-like anti-restriction moron, auxiliary metabolic gene and host takeover -1 9995 10435
YP_006509.1 NC_005856_p39 major tail tube structural protein phrog_1842 tail tube protein tail -1 45388 45999
YP_006485.1 NC_005856_p15 single-stranded DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 21051 21539
YP_006491.1 NC_005856_p21 hypothetical protein phrog_2299 unknown function unknown function -1 24542 27529
YP_006561.1 NC_005856_p91 morphogenetic function phrog_874 unknown function unknown function 1 84488 85417
YP_006489.1 NC_005856_p19 hypothetical protein phrog_30162 unknown function unknown function 1 23527 24132
YP_006506.1 NC_005856_p36 morphogenetic function phrog_1896 unknown function unknown function -1 40632 40988
YP_006477.1 NC_005856_p7 modulator of C1 action phrog_2160 unknown function unknown function -1 9750 9998
YP_006534.1 NC_005856_p64 hypothetical protein phrog_281 PAAR motif of membran proteins moron, auxiliary metabolic gene and host takeover -1 64779 65063
YP_006535.1 NC_005856_p65 hypothetical protein phrog_2213 nucleoside triphosphate pyrophosphohydrolase other 1 65233 65517