Genomic map of Vibrio phage VP2 (NC_005879)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_005879
Definition
Vibrio phage VP2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Enhodamvirus.
DB of origin
REFSEQ
Length
39853
Host Name
Vibrio cholerae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
47
%GC
50.55
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_024422.1 NC_005879_p15 hypothetical protein phrog_376 tail protein tail 1 11563 13347
YP_024419.1 NC_005879_p4 hypothetical protein phrog_332 head-tail adaptor connector 1 2851 4494
YP_052995.1 NC_005879_p36 hypothetical protein singleton unknown function unknown function -1 34448 34954
YP_052985.1 NC_005879_p17 hypothetical protein phrog_9153 unknown function unknown function 1 13754 15838
YP_053004.1 NC_005879_p45 hypothetical protein phrog_8878 unknown function unknown function -1 38356 38946
YP_052994.1 NC_005879_p35 hypothetical protein phrog_3392 unknown function unknown function -1 34036 34446
YP_052992.1 NC_005879_p33 hypothetical protein phrog_8941 unknown function unknown function -1 32750 33442
YP_024428.1 NC_005879_p27 integrase phrog_1156 DNA primase DNA, RNA and nucleotide metabolism -1 24673 26961
YP_052988.1 NC_005879_p24 hypothetical protein phrog_10658 unknown function unknown function -1 22667 22828
YP_052982.1 NC_005879_p11 hypothetical protein phrog_8135 unknown function unknown function 1 8170 8535
YP_024424.1 NC_005879_p20 tail fiber phrog_4440 tail fiber protein tail 1 19364 20437
YP_052979.1 NC_005879_p8 hypothetical protein phrog_3437 major head protein head and packaging 1 6006 6974
YP_052977.1 NC_005879_p6 hypothetical protein phrog_5977 unknown function unknown function 1 4734 4991
YP_052989.1 NC_005879_p26 hypothetical protein phrog_1211 2-aminooxy adenylosuccinate synthetase DNA, RNA and nucleotide metabolism -1 23600 24631
YP_052975.1 NC_005879_p2 hypothetical protein phrog_8823 terminase small subunit head and packaging 1 647 1147
YP_053000.1 NC_005879_p41 hypothetical protein phrog_9495 unknown function unknown function -1 37036 37407
YP_053003.1 NC_005879_p44 hypothetical protein phrog_9346 unknown function unknown function -1 38106 38345
YP_024426.1 NC_005879_p22 hypothetical protein phrog_474 phosphofructokinase other -1 21846 22163
YP_053005.1 NC_005879_p46 hypothetical protein phrog_14193 unknown function unknown function -1 39085 39507
YP_024425.1 NC_005879_p21 outer capsid protein phrog_8700 unknown function unknown function 1 20439 21821
YP_052993.1 NC_005879_p34 hypothetical protein phrog_4049 unknown function unknown function -1 33575 34039
YP_052983.1 NC_005879_p13 hypothetical protein phrog_8910 unknown function unknown function 1 9003 9305
YP_024429.1 NC_005879_p28 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 26951 28852
YP_052991.1 NC_005879_p31 hypothetical protein phrog_2378 unknown function unknown function -1 30333 30800
YP_052986.1 NC_005879_p18 hypothetical protein phrog_8824 unknown function unknown function 1 15838 17010
YP_052990.1 NC_005879_p30 hypothetical protein phrog_2402 unknown function unknown function -1 29403 30212
YP_052987.1 NC_005879_p23 hypothetical protein phrog_2165 DNA helicase DNA, RNA and nucleotide metabolism -1 22240 22677
YP_024431.1 NC_005879_p32 superfamily II DNA/RNA helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 30863 32281
YP_052981.1 NC_005879_p10 hypothetical protein phrog_8869 unknown function unknown function 1 7325 8173
YP_052999.1 NC_005879_p40 hypothetical protein singleton unknown function unknown function -1 36935 37039
YP_052978.1 NC_005879_p7 hypothetical protein phrog_3742 unknown function unknown function 1 4960 5838
YP_024421.1 NC_005879_p14 hypothetical protein phrog_9239 tail tubular protein tail 1 9329 11554
YP_052980.1 NC_005879_p9 hypothetical protein phrog_8977 unknown function unknown function 1 7041 7310
YP_052998.1 NC_005879_p39 hypothetical protein phrog_3600 antimicrobial peptide resistance and lipid A acylation protein PagP moron, auxiliary metabolic gene and host takeover -1 36428 36859
YP_052976.1 NC_005879_p5 hypothetical protein phrog_9429 unknown function unknown function 1 4494 4721
YP_024430.1 NC_005879_p29 single-stranded DNA-binding protein phrog_7364 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 28861 29337
YP_052996.1 NC_005879_p37 hypothetical protein phrog_9688 unknown function unknown function -1 34998 35624
YP_052984.1 NC_005879_p16 hypothetical protein phrog_9290 unknown function unknown function 1 13353 13757
YP_024418.1 NC_005879_p3 terminase phrog_2 terminase large subunit head and packaging 1 1134 2840
YP_024423.1 NC_005879_p19 structural protein phrog_684 virion structural protein head and packaging 1 17012 19360
YP_052974.1 NC_005879_p1 hypothetical protein phrog_9836 unknown function unknown function 1 409 630
YP_053006.1 NC_005879_p47 hypothetical protein phrog_29496 unknown function unknown function -1 39548 39817
YP_053001.1 NC_005879_p42 hypothetical protein phrog_9197 unknown function unknown function -1 37407 37709
YP_052997.1 NC_005879_p38 hypothetical protein phrog_9060 unknown function unknown function -1 35933 36418
YP_024420.1 NC_005879_p12 hypothetical protein phrog_894 endolysin lysis 1 8537 9010
YP_053002.1 NC_005879_p43 hypothetical protein phrog_9131 unknown function unknown function -1 37709 37999
YP_024427.1 NC_005879_p25 hydrolase singleton unknown function unknown function -1 23019 23402