| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_005879 |
Definition |
Vibrio phage VP2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Enhodamvirus. |
DB of origin |
REFSEQ |
Length |
39853 |
Host Name |
Vibrio cholerae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
47 |
%GC |
50.55 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_024422.1 | NC_005879_p15 | hypothetical protein | phrog_376 | tail protein | tail | 1 | 11563 | 13347 |
| YP_024419.1 | NC_005879_p4 | hypothetical protein | phrog_332 | head-tail adaptor | connector | 1 | 2851 | 4494 |
| YP_052995.1 | NC_005879_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34448 | 34954 |
| YP_052985.1 | NC_005879_p17 | hypothetical protein | phrog_9153 | unknown function | unknown function | 1 | 13754 | 15838 |
| YP_053004.1 | NC_005879_p45 | hypothetical protein | phrog_8878 | unknown function | unknown function | -1 | 38356 | 38946 |
| YP_052994.1 | NC_005879_p35 | hypothetical protein | phrog_3392 | unknown function | unknown function | -1 | 34036 | 34446 |
| YP_052992.1 | NC_005879_p33 | hypothetical protein | phrog_8941 | unknown function | unknown function | -1 | 32750 | 33442 |
| YP_024428.1 | NC_005879_p27 | integrase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 24673 | 26961 |
| YP_052988.1 | NC_005879_p24 | hypothetical protein | phrog_10658 | unknown function | unknown function | -1 | 22667 | 22828 |
| YP_052982.1 | NC_005879_p11 | hypothetical protein | phrog_8135 | unknown function | unknown function | 1 | 8170 | 8535 |
| YP_024424.1 | NC_005879_p20 | tail fiber | phrog_4440 | tail fiber protein | tail | 1 | 19364 | 20437 |
| YP_052979.1 | NC_005879_p8 | hypothetical protein | phrog_3437 | major head protein | head and packaging | 1 | 6006 | 6974 |
| YP_052977.1 | NC_005879_p6 | hypothetical protein | phrog_5977 | unknown function | unknown function | 1 | 4734 | 4991 |
| YP_052989.1 | NC_005879_p26 | hypothetical protein | phrog_1211 | 2-aminooxy adenylosuccinate synthetase | DNA, RNA and nucleotide metabolism | -1 | 23600 | 24631 |
| YP_052975.1 | NC_005879_p2 | hypothetical protein | phrog_8823 | terminase small subunit | head and packaging | 1 | 647 | 1147 |
| YP_053000.1 | NC_005879_p41 | hypothetical protein | phrog_9495 | unknown function | unknown function | -1 | 37036 | 37407 |
| YP_053003.1 | NC_005879_p44 | hypothetical protein | phrog_9346 | unknown function | unknown function | -1 | 38106 | 38345 |
| YP_024426.1 | NC_005879_p22 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 21846 | 22163 |
| YP_053005.1 | NC_005879_p46 | hypothetical protein | phrog_14193 | unknown function | unknown function | -1 | 39085 | 39507 |
| YP_024425.1 | NC_005879_p21 | outer capsid protein | phrog_8700 | unknown function | unknown function | 1 | 20439 | 21821 |
| YP_052993.1 | NC_005879_p34 | hypothetical protein | phrog_4049 | unknown function | unknown function | -1 | 33575 | 34039 |
| YP_052983.1 | NC_005879_p13 | hypothetical protein | phrog_8910 | unknown function | unknown function | 1 | 9003 | 9305 |
| YP_024429.1 | NC_005879_p28 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 26951 | 28852 |
| YP_052991.1 | NC_005879_p31 | hypothetical protein | phrog_2378 | unknown function | unknown function | -1 | 30333 | 30800 |
| YP_052986.1 | NC_005879_p18 | hypothetical protein | phrog_8824 | unknown function | unknown function | 1 | 15838 | 17010 |
| YP_052990.1 | NC_005879_p30 | hypothetical protein | phrog_2402 | unknown function | unknown function | -1 | 29403 | 30212 |
| YP_052987.1 | NC_005879_p23 | hypothetical protein | phrog_2165 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 22240 | 22677 |
| YP_024431.1 | NC_005879_p32 | superfamily II DNA/RNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 30863 | 32281 |
| YP_052981.1 | NC_005879_p10 | hypothetical protein | phrog_8869 | unknown function | unknown function | 1 | 7325 | 8173 |
| YP_052999.1 | NC_005879_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36935 | 37039 |
| YP_052978.1 | NC_005879_p7 | hypothetical protein | phrog_3742 | unknown function | unknown function | 1 | 4960 | 5838 |
| YP_024421.1 | NC_005879_p14 | hypothetical protein | phrog_9239 | tail tubular protein | tail | 1 | 9329 | 11554 |
| YP_052980.1 | NC_005879_p9 | hypothetical protein | phrog_8977 | unknown function | unknown function | 1 | 7041 | 7310 |
| YP_052998.1 | NC_005879_p39 | hypothetical protein | phrog_3600 | antimicrobial peptide resistance and lipid A acylation protein PagP | moron, auxiliary metabolic gene and host takeover | -1 | 36428 | 36859 |
| YP_052976.1 | NC_005879_p5 | hypothetical protein | phrog_9429 | unknown function | unknown function | 1 | 4494 | 4721 |
| YP_024430.1 | NC_005879_p29 | single-stranded DNA-binding protein | phrog_7364 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 28861 | 29337 |
| YP_052996.1 | NC_005879_p37 | hypothetical protein | phrog_9688 | unknown function | unknown function | -1 | 34998 | 35624 |
| YP_052984.1 | NC_005879_p16 | hypothetical protein | phrog_9290 | unknown function | unknown function | 1 | 13353 | 13757 |
| YP_024418.1 | NC_005879_p3 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 1134 | 2840 |
| YP_024423.1 | NC_005879_p19 | structural protein | phrog_684 | virion structural protein | head and packaging | 1 | 17012 | 19360 |
| YP_052974.1 | NC_005879_p1 | hypothetical protein | phrog_9836 | unknown function | unknown function | 1 | 409 | 630 |
| YP_053006.1 | NC_005879_p47 | hypothetical protein | phrog_29496 | unknown function | unknown function | -1 | 39548 | 39817 |
| YP_053001.1 | NC_005879_p42 | hypothetical protein | phrog_9197 | unknown function | unknown function | -1 | 37407 | 37709 |
| YP_052997.1 | NC_005879_p38 | hypothetical protein | phrog_9060 | unknown function | unknown function | -1 | 35933 | 36418 |
| YP_024420.1 | NC_005879_p12 | hypothetical protein | phrog_894 | endolysin | lysis | 1 | 8537 | 9010 |
| YP_053002.1 | NC_005879_p43 | hypothetical protein | phrog_9131 | unknown function | unknown function | -1 | 37709 | 37999 |
| YP_024427.1 | NC_005879_p25 | hydrolase | singleton | unknown function | unknown function | -1 | 23019 | 23402 |