| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_005891 |
Definition |
Vibrio phage VP5, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Enhodamvirus. |
DB of origin |
REFSEQ |
Length |
39786 |
Host Name |
Vibrio cholerae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
48 |
%GC |
50.48 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_053038.1 | NC_005891_p44 | hypothetical protein | phrog_9495 | unknown function | unknown function | -1 | 36971 | 37342 |
| YP_053016.1 | NC_005891_p14 | hypothetical protein | phrog_376 | tail protein | tail | 1 | 11568 | 13352 |
| YP_053025.1 | NC_005891_p30 | hypothetical protein | phrog_2402 | unknown function | unknown function | -1 | 29352 | 30251 |
| YP_053010.1 | NC_005891_p6 | hypothetical protein | phrog_3742 | unknown function | unknown function | 1 | 4959 | 5837 |
| YP_053019.1 | NC_005891_p17 | hypothetical protein | phrog_8824 | unknown function | unknown function | 1 | 15834 | 17006 |
| YP_024979.1 | NC_005891_p11 | hypothetical protein | phrog_894 | endolysin | lysis | 1 | 8536 | 9009 |
| YP_024983.1 | NC_005891_p24 | hypothetical protein | phrog_7076 | dATP triphosphohydrolase | DNA, RNA and nucleotide metabolism | -1 | 22773 | 23351 |
| YP_053030.1 | NC_005891_p36 | hypothetical protein | phrog_3392 | unknown function | unknown function | -1 | 33985 | 34395 |
| YP_053027.1 | NC_005891_p33 | hypothetical protein | phrog_9940 | unknown function | unknown function | -1 | 32346 | 32642 |
| YP_053041.1 | NC_005891_p47 | hypothetical protein | phrog_9346 | unknown function | unknown function | -1 | 38041 | 38280 |
| YP_053034.1 | NC_005891_p40 | hypothetical protein | phrog_13997 | unknown function | unknown function | -1 | 35615 | 35872 |
| YP_024988.1 | NC_005891_p32 | superfamily II DNA/RNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 30812 | 32281 |
| YP_053021.1 | NC_005891_p20 | hypothetical protein | phrog_8700 | unknown function | unknown function | 1 | 20435 | 21769 |
| YP_024985.1 | NC_005891_p27 | integrase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 24622 | 26910 |
| YP_053036.1 | NC_005891_p42 | hypothetical protein | phrog_3600 | antimicrobial peptide resistance and lipid A acylation protein PagP | moron, auxiliary metabolic gene and host takeover | -1 | 36375 | 36794 |
| YP_024982.1 | NC_005891_p21 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 21794 | 22111 |
| YP_053028.1 | NC_005891_p34 | hypothetical protein | phrog_8941 | unknown function | unknown function | -1 | 32699 | 33391 |
| YP_053040.1 | NC_005891_p46 | hypothetical protein | phrog_9131 | unknown function | unknown function | -1 | 37644 | 37934 |
| YP_024977.1 | NC_005891_p2 | hypothetical protein | phrog_2 | terminase large subunit | head and packaging | 1 | 1133 | 2839 |
| YP_053022.1 | NC_005891_p22 | hypothetical protein | phrog_2165 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 22188 | 22625 |
| YP_024986.1 | NC_005891_p28 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 26900 | 28801 |
| YP_053039.1 | NC_005891_p45 | hypothetical protein | phrog_9197 | unknown function | unknown function | -1 | 37342 | 37566 |
| YP_024984.1 | NC_005891_p26 | adenylosuccinate synthetase | phrog_1211 | 2-aminooxy adenylosuccinate synthetase | DNA, RNA and nucleotide metabolism | -1 | 23549 | 24580 |
| YP_053014.1 | NC_005891_p10 | hypothetical protein | phrog_8135 | unknown function | unknown function | 1 | 8169 | 8534 |
| YP_053013.1 | NC_005891_p9 | hypothetical protein | phrog_8869 | unknown function | unknown function | 1 | 7324 | 8172 |
| YP_053031.1 | NC_005891_p37 | hypothetical protein | phrog_9382 | unknown function | unknown function | -1 | 34397 | 34723 |
| YP_053008.1 | NC_005891_p4 | hypothetical protein | phrog_9429 | unknown function | unknown function | 1 | 4493 | 4720 |
| YP_053042.1 | NC_005891_p48 | hypothetical protein | phrog_8878 | unknown function | unknown function | -1 | 38291 | 38881 |
| YP_024978.1 | NC_005891_p3 | hypothetical protein | phrog_332 | head-tail adaptor | connector | 1 | 2850 | 4493 |
| YP_053017.1 | NC_005891_p15 | hypothetical protein | phrog_9290 | unknown function | unknown function | 1 | 13355 | 13753 |
| YP_053035.1 | NC_005891_p41 | hypothetical protein | phrog_9060 | unknown function | unknown function | -1 | 35882 | 36316 |
| YP_053011.1 | NC_005891_p7 | hypothetical protein | phrog_3437 | major head protein | head and packaging | 1 | 6005 | 6973 |
| YP_053009.1 | NC_005891_p5 | hypothetical protein | phrog_5977 | unknown function | unknown function | 1 | 4733 | 4990 |
| YP_024981.1 | NC_005891_p18 | structural protein | phrog_684 | virion structural protein | head and packaging | 1 | 17008 | 19356 |
| YP_053020.1 | NC_005891_p19 | hypothetical protein | phrog_4440 | tail fiber protein | tail | 1 | 19360 | 20433 |
| YP_053029.1 | NC_005891_p35 | hypothetical protein | phrog_4049 | unknown function | unknown function | -1 | 33524 | 33988 |
| YP_053024.1 | NC_005891_p25 | hypothetical protein | phrog_9860 | unknown function | unknown function | -1 | 23287 | 23547 |
| YP_053032.1 | NC_005891_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34771 | 35175 |
| YP_053023.1 | NC_005891_p23 | hypothetical protein | singleton | unknown function | unknown function | -1 | 22650 | 22757 |
| YP_053033.1 | NC_005891_p39 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35171 | 35572 |
| YP_053007.1 | NC_005891_p1 | hypothetical protein | phrog_8823 | terminase small subunit | head and packaging | 1 | 535 | 1146 |
| YP_053018.1 | NC_005891_p16 | hypothetical protein | phrog_9153 | unknown function | unknown function | 1 | 13750 | 15834 |
| YP_053037.1 | NC_005891_p43 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36850 | 36966 |
| YP_024980.1 | NC_005891_p13 | major tail subunit | phrog_9239 | tail tubular protein | tail | 1 | 9328 | 11559 |
| YP_053012.1 | NC_005891_p8 | hypothetical protein | phrog_8977 | unknown function | unknown function | 1 | 7040 | 7309 |
| YP_053026.1 | NC_005891_p31 | hypothetical protein | phrog_2378 | unknown function | unknown function | -1 | 30282 | 30749 |
| YP_053015.1 | NC_005891_p12 | hypothetical protein | phrog_8910 | unknown function | unknown function | 1 | 9002 | 9304 |
| YP_024987.1 | NC_005891_p29 | single-stranded DNA-binding protein | phrog_7364 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 28810 | 29286 |