Genomic map of Vibrio phage VP5 (NC_005891)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_005891
Definition
Vibrio phage VP5, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Enhodamvirus.
DB of origin
REFSEQ
Length
39786
Host Name
Vibrio cholerae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
48
%GC
50.48
Number of singletons
4
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_053038.1 NC_005891_p44 hypothetical protein phrog_9495 unknown function unknown function -1 36971 37342
YP_053016.1 NC_005891_p14 hypothetical protein phrog_376 tail protein tail 1 11568 13352
YP_053025.1 NC_005891_p30 hypothetical protein phrog_2402 unknown function unknown function -1 29352 30251
YP_053010.1 NC_005891_p6 hypothetical protein phrog_3742 unknown function unknown function 1 4959 5837
YP_053019.1 NC_005891_p17 hypothetical protein phrog_8824 unknown function unknown function 1 15834 17006
YP_024979.1 NC_005891_p11 hypothetical protein phrog_894 endolysin lysis 1 8536 9009
YP_024983.1 NC_005891_p24 hypothetical protein phrog_7076 dATP triphosphohydrolase DNA, RNA and nucleotide metabolism -1 22773 23351
YP_053030.1 NC_005891_p36 hypothetical protein phrog_3392 unknown function unknown function -1 33985 34395
YP_053027.1 NC_005891_p33 hypothetical protein phrog_9940 unknown function unknown function -1 32346 32642
YP_053041.1 NC_005891_p47 hypothetical protein phrog_9346 unknown function unknown function -1 38041 38280
YP_053034.1 NC_005891_p40 hypothetical protein phrog_13997 unknown function unknown function -1 35615 35872
YP_024988.1 NC_005891_p32 superfamily II DNA/RNA helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 30812 32281
YP_053021.1 NC_005891_p20 hypothetical protein phrog_8700 unknown function unknown function 1 20435 21769
YP_024985.1 NC_005891_p27 integrase phrog_1156 DNA primase DNA, RNA and nucleotide metabolism -1 24622 26910
YP_053036.1 NC_005891_p42 hypothetical protein phrog_3600 antimicrobial peptide resistance and lipid A acylation protein PagP moron, auxiliary metabolic gene and host takeover -1 36375 36794
YP_024982.1 NC_005891_p21 hypothetical protein phrog_474 phosphofructokinase other -1 21794 22111
YP_053028.1 NC_005891_p34 hypothetical protein phrog_8941 unknown function unknown function -1 32699 33391
YP_053040.1 NC_005891_p46 hypothetical protein phrog_9131 unknown function unknown function -1 37644 37934
YP_024977.1 NC_005891_p2 hypothetical protein phrog_2 terminase large subunit head and packaging 1 1133 2839
YP_053022.1 NC_005891_p22 hypothetical protein phrog_2165 DNA helicase DNA, RNA and nucleotide metabolism -1 22188 22625
YP_024986.1 NC_005891_p28 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 26900 28801
YP_053039.1 NC_005891_p45 hypothetical protein phrog_9197 unknown function unknown function -1 37342 37566
YP_024984.1 NC_005891_p26 adenylosuccinate synthetase phrog_1211 2-aminooxy adenylosuccinate synthetase DNA, RNA and nucleotide metabolism -1 23549 24580
YP_053014.1 NC_005891_p10 hypothetical protein phrog_8135 unknown function unknown function 1 8169 8534
YP_053013.1 NC_005891_p9 hypothetical protein phrog_8869 unknown function unknown function 1 7324 8172
YP_053031.1 NC_005891_p37 hypothetical protein phrog_9382 unknown function unknown function -1 34397 34723
YP_053008.1 NC_005891_p4 hypothetical protein phrog_9429 unknown function unknown function 1 4493 4720
YP_053042.1 NC_005891_p48 hypothetical protein phrog_8878 unknown function unknown function -1 38291 38881
YP_024978.1 NC_005891_p3 hypothetical protein phrog_332 head-tail adaptor connector 1 2850 4493
YP_053017.1 NC_005891_p15 hypothetical protein phrog_9290 unknown function unknown function 1 13355 13753
YP_053035.1 NC_005891_p41 hypothetical protein phrog_9060 unknown function unknown function -1 35882 36316
YP_053011.1 NC_005891_p7 hypothetical protein phrog_3437 major head protein head and packaging 1 6005 6973
YP_053009.1 NC_005891_p5 hypothetical protein phrog_5977 unknown function unknown function 1 4733 4990
YP_024981.1 NC_005891_p18 structural protein phrog_684 virion structural protein head and packaging 1 17008 19356
YP_053020.1 NC_005891_p19 hypothetical protein phrog_4440 tail fiber protein tail 1 19360 20433
YP_053029.1 NC_005891_p35 hypothetical protein phrog_4049 unknown function unknown function -1 33524 33988
YP_053024.1 NC_005891_p25 hypothetical protein phrog_9860 unknown function unknown function -1 23287 23547
YP_053032.1 NC_005891_p38 hypothetical protein singleton unknown function unknown function -1 34771 35175
YP_053023.1 NC_005891_p23 hypothetical protein singleton unknown function unknown function -1 22650 22757
YP_053033.1 NC_005891_p39 hypothetical protein singleton unknown function unknown function -1 35171 35572
YP_053007.1 NC_005891_p1 hypothetical protein phrog_8823 terminase small subunit head and packaging 1 535 1146
YP_053018.1 NC_005891_p16 hypothetical protein phrog_9153 unknown function unknown function 1 13750 15834
YP_053037.1 NC_005891_p43 hypothetical protein singleton unknown function unknown function -1 36850 36966
YP_024980.1 NC_005891_p13 major tail subunit phrog_9239 tail tubular protein tail 1 9328 11559
YP_053012.1 NC_005891_p8 hypothetical protein phrog_8977 unknown function unknown function 1 7040 7309
YP_053026.1 NC_005891_p31 hypothetical protein phrog_2378 unknown function unknown function -1 30282 30749
YP_053015.1 NC_005891_p12 hypothetical protein phrog_8910 unknown function unknown function 1 9002 9304
YP_024987.1 NC_005891_p29 single-stranded DNA-binding protein phrog_7364 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 28810 29286