Genomic map of Sulfolobus virus STSV1 (NC_006268)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_006268
Definition
Sulfolobus virus STSV1, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Bicaudaviridae; unclassified Bicaudaviridae.
DB of origin
REFSEQ
Length
75294
Host Name
Sulfolobus tengchongensis
Host domain
Archaea
Is prophage?
undef
Number of proteins
74
%GC
35.21
Number of singletons
8
Number of paralogs
10

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_077216.1 NC_006268_p23 hypothetical protein phrog_9615 unknown function unknown function 1 23299 24111
YP_077206.1 NC_006268_p13 hypothetical protein phrog_38877 unknown function unknown function 1 15208 15453
YP_077207.1 NC_006268_p14 hypothetical protein singleton unknown function unknown function 1 15500 16564
YP_077213.1 NC_006268_p20 hypothetical protein phrog_876 transcriptional repressor transcription regulation 1 20795 21115
YP_077205.1 NC_006268_p12 Adenine-specific DNA methylase phrog_10183 DNA methyltransferase other 1 12958 15060
YP_077236.1 NC_006268_p43 hypothetical protein phrog_36517 unknown function unknown function -1 46366 46854
YP_077227.1 NC_006268_p34 hypothetical protein phrog_22810 unknown function unknown function 1 31065 37991
YP_077257.1 NC_006268_p64 integral membrane protein phrog_24117 membrane protein moron, auxiliary metabolic gene and host takeover -1 64809 66551
YP_077260.1 NC_006268_p67 hypothetical protein phrog_35388 unknown function unknown function 1 68777 69253
YP_077246.1 NC_006268_p53 hypothetical protein phrog_24632 unknown function unknown function -1 53928 54176
YP_077204.1 NC_006268_p11 hypothetical protein phrog_14919 unknown function unknown function 1 11903 12796
YP_077217.1 NC_006268_p24 hypothetical protein phrog_9615 unknown function unknown function 1 24117 25361
YP_077255.1 NC_006268_p62 hypothetical protein phrog_32966 unknown function unknown function -1 63313 63684
YP_077234.1 NC_006268_p41 hypothetical protein phrog_11364 transmembrane protein other 1 43571 45766
YP_077248.1 NC_006268_p55 hypothetical protein phrog_33101 unknown function unknown function -1 58915 59265
YP_077253.1 NC_006268_p60 hypothetical protein phrog_32800 unknown function unknown function 1 61454 61918
YP_077202.1 NC_006268_p9 hypothetical protein phrog_23387 unknown function unknown function 1 9976 10419
YP_077221.1 NC_006268_p28 hypothetical protein phrog_36678 unknown function unknown function 1 27350 28756
YP_077212.1 NC_006268_p19 hypothetical protein phrog_34505 unknown function unknown function 1 20070 20633
YP_077261.1 NC_006268_p68 hypothetical protein phrog_31035 unknown function unknown function -1 70109 70876
YP_077224.1 NC_006268_p31 hypothetical protein phrog_34698 unknown function unknown function 1 29314 29616
YP_077201.1 NC_006268_p8 hypothetical protein singleton unknown function unknown function 1 9327 9815
YP_077203.1 NC_006268_p10 hypothetical protein phrog_14919 unknown function unknown function 1 10724 11677
YP_077218.1 NC_006268_p25 hypothetical protein phrog_28589 unknown function unknown function 1 25543 26343
YP_077194.1 NC_006268_p1 hypothetical protein phrog_19764 unknown function unknown function 1 1412 2278
YP_077232.1 NC_006268_p39 hypothetical protein phrog_16261 virion structural protein head and packaging -1 42543 42917
YP_077239.1 NC_006268_p46 hypothetical protein phrog_27948 unknown function unknown function 1 47843 48391
YP_077211.1 NC_006268_p18 hypothetical protein phrog_887 queuine tRNA-ribosyltransferase moron, auxiliary metabolic gene and host takeover 1 19292 20092
YP_077199.1 NC_006268_p6 hypothetical protein phrog_23387 unknown function unknown function 1 7521 7970
YP_077195.1 NC_006268_p2 hypothetical protein singleton unknown function unknown function 1 2758 3039
YP_077245.1 NC_006268_p52 hypothetical protein phrog_23662 unknown function unknown function -1 52780 53622
YP_077265.1 NC_006268_p72 hypothetical protein phrog_28239 unknown function unknown function 1 73328 73678
YP_077223.1 NC_006268_p30 hypothetical protein phrog_36431 unknown function unknown function 1 28952 29269
YP_077230.1 NC_006268_p37 hypothetical protein phrog_38696 unknown function unknown function -1 39532 41805
YP_077231.1 NC_006268_p38 hypothetical protein phrog_25734 unknown function unknown function 1 41992 42492
YP_077247.1 NC_006268_p54 hypothetical protein phrog_8969 unknown function unknown function 1 54256 58905
YP_077209.1 NC_006268_p16 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism 1 17692 18465
YP_077214.1 NC_006268_p21 hypothetical protein phrog_9615 unknown function unknown function 1 21128 22213
YP_077228.1 NC_006268_p35 hypothetical protein phrog_35910 unknown function unknown function -1 37986 38975
YP_077198.1 NC_006268_p5 hypothetical protein phrog_19764 unknown function unknown function 1 6271 7194
YP_077215.1 NC_006268_p22 hypothetical protein phrog_9615 unknown function unknown function 1 22226 23287
YP_077208.1 NC_006268_p15 hypothetical protein phrog_14919 unknown function unknown function 1 16725 17678
YP_077210.1 NC_006268_p17 hypothetical protein singleton unknown function unknown function 1 18759 19211
YP_077240.1 NC_006268_p47 hypothetical protein phrog_34074 unknown function unknown function -1 48593 48829
YP_077229.1 NC_006268_p36 hypothetical protein phrog_22026 unknown function unknown function -1 39020 39520
YP_077219.1 NC_006268_p26 hypothetical protein phrog_9615 unknown function unknown function 1 26354 27334
YP_077235.1 NC_006268_p42 hypothetical protein phrog_28911 unknown function unknown function -1 45768 46373
YP_077225.1 NC_006268_p32 hypothetical protein phrog_35815 unknown function unknown function 1 29632 30387
YP_077256.1 NC_006268_p63 group I glycosyltransferase phrog_2170 glycosyltransferase moron, auxiliary metabolic gene and host takeover -1 63785 64774
YP_077220.1 NC_006268_p27 hypothetical protein singleton unknown function unknown function -1 26950 27477
YP_077196.1 NC_006268_p3 hypothetical protein singleton unknown function unknown function 1 3739 4644
YP_077263.1 NC_006268_p70 hypothetical protein phrog_28160 unknown function unknown function -1 72234 72443
YP_077267.1 NC_006268_p74 hypothetical protein phrog_28281 unknown function unknown function -1 74438 75250
YP_077237.1 NC_006268_p44 hypothetical protein phrog_35583 unknown function unknown function -1 46884 47213
YP_077226.1 NC_006268_p33 dUTPase phrog_1663 dCTP deaminase DNA, RNA and nucleotide metabolism 1 30415 30933
YP_077249.1 NC_006268_p56 hypothetical protein phrog_9208 integrase integration and excision -1 59318 59809
YP_077252.1 NC_006268_p59 hypothetical protein phrog_38210 unknown function unknown function -1 60860 61198
YP_077264.1 NC_006268_p71 hypothetical protein phrog_31442 unknown function unknown function -1 72440 73066
YP_077238.1 NC_006268_p45 hypothetical protein phrog_26255 unknown function unknown function 1 47245 47643
YP_077222.1 NC_006268_p29 hypothetical protein singleton unknown function unknown function -1 28129 28464
YP_077243.1 NC_006268_p50 hypothetical protein phrog_27360 unknown function unknown function -1 50114 50956
YP_077259.1 NC_006268_p66 Cytosine methylase, similar to N4-cytosine methylase phrog_67 DNA methyltransferase other -1 67707 68600
YP_077251.1 NC_006268_p58 hypothetical protein phrog_36913 unknown function unknown function 1 60435 60863
YP_077258.1 NC_006268_p65 Nucleoside-diphosphate-sugar epimerase phrog_540 nucleotide-sugar epimerase DNA, RNA and nucleotide metabolism -1 66654 67616
YP_077233.1 NC_006268_p40 coat protein phrog_14391 major head protein head and packaging 1 43031 43465
YP_077197.1 NC_006268_p4 hypothetical protein phrog_23387 unknown function unknown function 1 5217 5648
YP_077254.1 NC_006268_p61 Cytosine methylase, similar to PspGI methylase phrog_18146 DNA methyltransferase other -1 62062 63300
YP_077250.1 NC_006268_p57 hypothetical protein phrog_33343 unknown function unknown function 1 60014 60370
YP_077242.1 NC_006268_p49 hypothetical protein phrog_22047 unknown function unknown function -1 49494 50117
YP_077266.1 NC_006268_p73 hypothetical protein phrog_31106 unknown function unknown function 1 73684 74550
YP_077200.1 NC_006268_p7 hypothetical protein phrog_19764 unknown function unknown function 1 8405 9319
YP_077262.1 NC_006268_p69 hypothetical protein phrog_11254 DnaA-like replication initiation protein DNA, RNA and nucleotide metabolism -1 70836 71870
YP_077244.1 NC_006268_p51 hypothetical protein singleton unknown function unknown function -1 51189 52004
YP_077241.1 NC_006268_p48 hypothetical protein phrog_23486 unknown function unknown function -1 48826 49452