Genomic map of Pseudomonas phage B3 (NC_006548)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_006548
Definition
Pseudomonas phage B3, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Beetrevirus; Pseudomonas virus B3.
DB of origin
REFSEQ
Length
38439
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
59
%GC
63.15
Number of singletons
9
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_164067.1 NC_006548_p31 large terminase subunit phrog_2 terminase large subunit head and packaging 1 14788 16248
YP_164059.1 NC_006548_p23 hypothetical protein singleton unknown function unknown function 1 11538 11603
YP_164092.1 NC_006548_p56 hypothetical protein phrog_1196 tail assembly chaperone tail 1 34600 35055
YP_164052.1 NC_006548_p16 hypothetical protein phrog_38063 unknown function unknown function -1 9192 9683
YP_164046.1 NC_006548_p10 hypothetical protein phrog_2043 unknown function unknown function -1 4042 4383
YP_164053.1 NC_006548_p17 hypothetical protein phrog_925 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 9695 9904
YP_164061.1 NC_006548_p25 endolysin phrog_669 endolysin lysis 1 11918 12712
YP_164045.1 NC_006548_p9 hypothetical protein phrog_6655 unknown function unknown function -1 3764 4045
YP_164073.1 NC_006548_p37 scaffolding protein singleton unknown function unknown function 1 20664 21128
YP_164074.1 NC_006548_p38 hypothetical protein phrog_673 head scaffolding protein head and packaging 1 21132 21509
YP_164044.1 NC_006548_p8 hypothetical protein phrog_6628 unknown function unknown function -1 3390 3764
YP_164037.1 NC_006548_p1 transcriptional regulator phrog_532 late transcriptional activator transcription regulation -1 124 486
YP_164076.1 NC_006548_p40 hypothetical protein phrog_12170 unknown function unknown function 1 22497 23126
YP_164055.1 NC_006548_p19 hypothetical protein singleton unknown function unknown function 1 10030 10164
YP_164095.1 NC_006548_p59 hypothetical protein phrog_2623 unknown function unknown function 1 38128 38352
YP_164062.1 NC_006548_p26 hypothetical protein phrog_6410 unknown function unknown function 1 12709 12921
YP_164058.1 NC_006548_p22 hypothetical protein singleton unknown function unknown function 1 11138 11524
YP_164086.1 NC_006548_p50 tail length tape measure protein phrog_24 tail length tape measure protein tail 1 26894 30193
YP_164065.1 NC_006548_p29 hypothetical protein phrog_436 unknown function unknown function 1 13902 14210
YP_164057.1 NC_006548_p21 hypothetical protein singleton unknown function unknown function 1 11022 11132
YP_164085.1 NC_006548_p49 Dam modification methylase phrog_56 DNA methyltransferase other 1 26018 26812
YP_164078.1 NC_006548_p42 hypothetical protein phrog_209 portal protein head and packaging 1 23646 24110
YP_164039.1 NC_006548_p3 hypothetical protein phrog_5249 unknown function unknown function -1 1039 1506
YP_164051.1 NC_006548_p15 hypothetical protein phrog_101 CII-like transcriptional activator transcription regulation -1 8579 9064
YP_164042.1 NC_006548_p6 hypothetical protein phrog_846 unknown function unknown function -1 2581 3204
YP_164084.1 NC_006548_p48 Com translational regulator phrog_6417 translational regulator other 1 25863 26048
YP_164088.1 NC_006548_p52 hypothetical protein phrog_687 structural protein head and packaging 1 31151 32074
YP_164082.1 NC_006548_p46 hypothetical protein phrog_8022 unknown function unknown function 1 25596 25727
YP_164056.1 NC_006548_p20 hypothetical protein singleton unknown function unknown function 1 10406 10993
YP_164041.1 NC_006548_p5 hypothetical protein phrog_421 unknown function unknown function -1 1890 2579
YP_164090.1 NC_006548_p54 hypothetical protein phrog_778 tail assembly protein tail 1 33770 34588
YP_164089.1 NC_006548_p53 hypothetical protein phrog_1082 tail assembly protein tail 1 32077 33783
YP_164047.1 NC_006548_p11 transposase B subunit phrog_296 DNA transposition protein integration and excision -1 4385 5557
YP_164050.1 NC_006548_p14 hypothetical protein phrog_1368 transcriptional regulator transcription regulation -1 8278 8586
YP_164083.1 NC_006548_p47 hypothetical protein singleton unknown function unknown function 1 25741 25821
YP_164060.1 NC_006548_p24 holin phrog_1528 holin lysis 1 11682 11978
YP_164069.1 NC_006548_p33 hypothetical protein phrog_220 minor head protein and DNA pilot head and packaging 1 17714 18970
YP_164079.1 NC_006548_p43 hypothetical protein phrog_3357 unknown function unknown function 1 24107 24313
YP_164038.1 NC_006548_p2 hypothetical protein phrog_286 unknown function unknown function -1 489 1052
YP_164093.1 NC_006548_p57 hypothetical protein phrog_1101 tail protein tail 1 35042 37252
YP_164081.1 NC_006548_p45 hypothetical protein phrog_1442 tail assembly chaperone tail 1 25072 25578
YP_164072.1 NC_006548_p36 protease phrog_976 head maturation protease head and packaging 1 19857 21128
YP_164070.1 NC_006548_p34 hypothetical protein singleton unknown function unknown function 1 18980 19078
YP_164094.1 NC_006548_p58 hypothetical protein singleton unknown function unknown function 1 37249 38049
YP_164043.1 NC_006548_p7 hypothetical protein phrog_4446 unknown function unknown function -1 3197 3397
YP_164087.1 NC_006548_p51 hypothetical protein phrog_687 structural protein head and packaging 1 30193 31149
YP_164080.1 NC_006548_p44 hypothetical protein phrog_807 major tail protein with Ig-like domain tail 1 24317 25069
YP_164049.1 NC_006548_p13 hypothetical protein phrog_1748 unknown function unknown function -1 7341 8267
YP_164064.1 NC_006548_p28 hypothetical protein phrog_462 lipoprotein other 1 13523 13912
YP_164075.1 NC_006548_p39 capsid protein phrog_1005 major head protein head and packaging 1 21521 22450
YP_164063.1 NC_006548_p27 Rz lysis protein phrog_1403 Rz-like spanin lysis 1 12908 13519
YP_164040.1 NC_006548_p4 hypothetical protein phrog_10427 unknown function unknown function -1 1508 1966
YP_164068.1 NC_006548_p32 portal protein phrog_113 portal protein head and packaging 1 16248 17714
YP_164071.1 NC_006548_p35 hypothetical protein phrog_26 tail completion or Neck1 protein connector 1 19094 19666
YP_164066.1 NC_006548_p30 small terminase subunit phrog_426 terminase small subunit head and packaging 1 14207 14788
YP_164077.1 NC_006548_p41 hypothetical protein phrog_195 head-tail adaptor connector 1 23126 23644
YP_164054.1 NC_006548_p18 transcriptional regulator phrog_8 transcriptional regulator transcription regulation 1 9990 10400
YP_164091.1 NC_006548_p55 hypothetical protein phrog_1180 tail assembly chaperone tail 1 34598 34828
YP_164048.1 NC_006548_p12 transposase A subunit phrog_310 transposase integration and excision -1 5557 7338