| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_006552 |
Definition |
Pseudomonas phage F116, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Hollowayvirus. |
DB of origin |
REFSEQ |
Length |
65195 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
70 |
%GC |
63.17 |
Number of singletons |
7 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_164306.1 | NC_006552_p42 | hypothetical protein | phrog_479 | unknown function | unknown function | 1 | 28782 | 29912 |
| YP_164305.1 | NC_006552_p41 | hypothetical protein | phrog_26238 | unknown function | unknown function | 1 | 27709 | 28620 |
| YP_164282.1 | NC_006552_p18 | hypothetical protein | phrog_16469 | unknown function | unknown function | -1 | 12826 | 13842 |
| YP_164333.1 | NC_006552_p69 | hypothetical protein | phrog_8717 | unknown function | unknown function | -1 | 63024 | 63539 |
| YP_164287.1 | NC_006552_p23 | hypothetical protein | phrog_1934 | unknown function | unknown function | -1 | 15583 | 16053 |
| YP_164297.1 | NC_006552_p33 | hypothetical protein | phrog_6028 | unknown function | unknown function | 1 | 20166 | 21023 |
| YP_164275.1 | NC_006552_p11 | DNA adenine methyltransferase | phrog_56 | DNA methyltransferase | other | -1 | 7766 | 8620 |
| YP_164332.1 | NC_006552_p68 | hypothetical protein | phrog_38460 | unknown function | unknown function | -1 | 62743 | 62835 |
| YP_164330.1 | NC_006552_p66 | hypothetical protein | phrog_3944 | unknown function | unknown function | 1 | 61799 | 62065 |
| YP_164269.1 | NC_006552_p5 | hypothetical protein | phrog_15779 | unknown function | unknown function | -1 | 2408 | 3169 |
| YP_164322.1 | NC_006552_p58 | hypothetical protein | phrog_11341 | unknown function | unknown function | 1 | 45869 | 47896 |
| YP_164293.1 | NC_006552_p29 | transcriptional regulator | phrog_4 | transcriptional repressor | transcription regulation | -1 | 18056 | 18853 |
| YP_164278.1 | NC_006552_p14 | RdgC exonuclease | phrog_724 | exonuclease recombination-associated | DNA, RNA and nucleotide metabolism | -1 | 10050 | 10973 |
| YP_164325.1 | NC_006552_p61 | holin | phrog_4237 | holin | lysis | 1 | 59294 | 59551 |
| YP_164334.1 | NC_006552_p70 | integrase | phrog_1 | integrase | integration and excision | 1 | 63960 | 65195 |
| YP_164267.1 | NC_006552_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1188 | 1610 |
| YP_164309.1 | NC_006552_p45 | hypothetical protein | phrog_11782 | unknown function | unknown function | 1 | 31820 | 32692 |
| YP_164316.1 | NC_006552_p52 | hypothetical protein | phrog_8040 | head closure Hc3 | connector | 1 | 38229 | 39419 |
| YP_164291.1 | NC_006552_p27 | hypothetical protein | phrog_15496 | unknown function | unknown function | -1 | 17168 | 17341 |
| YP_164329.1 | NC_006552_p65 | hypothetical protein | phrog_22880 | unknown function | unknown function | 1 | 61207 | 61626 |
| YP_164288.1 | NC_006552_p24 | regulatory protein | phrog_5527 | transcriptional regulator | transcription regulation | -1 | 16229 | 16600 |
| YP_164279.1 | NC_006552_p15 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 11002 | 11505 |
| YP_164314.1 | NC_006552_p50 | hypothetical protein | phrog_14189 | unknown function | unknown function | 1 | 34406 | 35263 |
| YP_164304.1 | NC_006552_p40 | portal protein | phrog_156 | portal protein | head and packaging | 1 | 25312 | 27630 |
| YP_164290.1 | NC_006552_p26 | hypothetical protein | phrog_12273 | unknown function | unknown function | -1 | 16912 | 17118 |
| YP_164319.1 | NC_006552_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42672 | 43022 |
| YP_164273.1 | NC_006552_p9 | DNA adenine methyltransferase | phrog_5172 | unknown function | unknown function | -1 | 4903 | 5709 |
| YP_164277.1 | NC_006552_p13 | nucleoid-associated protein | phrog_3767 | nucleoid associated protein | DNA, RNA and nucleotide metabolism | -1 | 8968 | 10023 |
| YP_164265.1 | NC_006552_p1 | hypothetical protein | phrog_7614 | unknown function | unknown function | -1 | 186 | 656 |
| YP_164315.1 | NC_006552_p51 | hypothetical protein | phrog_11272 | unknown function | unknown function | 1 | 35266 | 38229 |
| YP_164268.1 | NC_006552_p4 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2007 | 2213 |
| YP_164274.1 | NC_006552_p10 | DNA cytosine methyltransferase | phrog_116 | DNA methyltransferase | other | -1 | 5706 | 7769 |
| YP_164295.1 | NC_006552_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19459 | 19665 |
| YP_164326.1 | NC_006552_p62 | lysozyme | phrog_7 | endolysin | lysis | 1 | 59535 | 60068 |
| YP_164317.1 | NC_006552_p53 | hypothetical protein | phrog_8123 | unknown function | unknown function | 1 | 39487 | 40077 |
| YP_164283.1 | NC_006552_p19 | hypothetical protein | phrog_7838 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 13847 | 14602 |
| YP_164302.1 | NC_006552_p38 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 22851 | 23666 |
| YP_164271.1 | NC_006552_p7 | hypothetical protein | phrog_874 | unknown function | unknown function | -1 | 3804 | 4481 |
| YP_164303.1 | NC_006552_p39 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 23670 | 25301 |
| YP_164321.1 | NC_006552_p57 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43834 | 45648 |
| YP_164307.1 | NC_006552_p43 | virion structural protein | phrog_334 | major head protein | head and packaging | 1 | 29925 | 31217 |
| YP_164272.1 | NC_006552_p8 | hypothetical protein | phrog_3190 | unknown function | unknown function | -1 | 4478 | 4906 |
| YP_164318.1 | NC_006552_p54 | hypothetical protein | phrog_11362 | unknown function | unknown function | 1 | 40172 | 42679 |
| YP_164289.1 | NC_006552_p25 | hypothetical protein | phrog_9165 | unknown function | unknown function | -1 | 16635 | 16847 |
| YP_164266.1 | NC_006552_p2 | hypothetical protein | phrog_10312 | unknown function | unknown function | -1 | 724 | 1206 |
| YP_164327.1 | NC_006552_p63 | hypothetical protein | phrog_13 | Rz-like spanin | lysis | 1 | 60065 | 60583 |
| YP_164323.1 | NC_006552_p59 | hypothetical protein | phrog_15406 | DNA methyltransferase | other | 1 | 47838 | 54227 |
| YP_164270.1 | NC_006552_p6 | hypothetical protein | phrog_2457 | unknown function | unknown function | -1 | 3166 | 3807 |
| YP_164292.1 | NC_006552_p28 | hypothetical protein | phrog_2707 | unknown function | unknown function | 1 | 17753 | 18019 |
| YP_164276.1 | NC_006552_p12 | LexA-like protein | phrog_3502 | unknown function | unknown function | -1 | 8762 | 8971 |
| YP_164331.1 | NC_006552_p67 | hypothetical protein | phrog_1599 | unknown function | unknown function | -1 | 62047 | 62733 |
| YP_164285.1 | NC_006552_p21 | hypothetical protein | phrog_6033 | unknown function | unknown function | -1 | 15232 | 15453 |
| YP_164320.1 | NC_006552_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43229 | 43834 |
| YP_164308.1 | NC_006552_p44 | virion structural protein | phrog_8260 | virion structural protein | head and packaging | 1 | 31276 | 31755 |
| YP_164300.1 | NC_006552_p36 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 21884 | 22231 |
| YP_164311.1 | NC_006552_p47 | hypothetical protein | phrog_8397 | CsrA-like regulator | transcription regulation | 1 | 33363 | 33569 |
| YP_164296.1 | NC_006552_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19700 | 20179 |
| YP_164281.1 | NC_006552_p17 | hypothetical protein | phrog_30798 | unknown function | unknown function | -1 | 12224 | 12778 |
| YP_164301.1 | NC_006552_p37 | hypothetical protein | phrog_8117 | unknown function | unknown function | 1 | 22231 | 22725 |
| YP_164328.1 | NC_006552_p64 | hypothetical protein | phrog_1954 | virion structural protein | head and packaging | 1 | 60594 | 61187 |
| YP_164284.1 | NC_006552_p20 | hypothetical protein | phrog_31234 | unknown function | unknown function | -1 | 14599 | 15072 |
| YP_164299.1 | NC_006552_p35 | hypothetical protein | phrog_131 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 21567 | 21887 |
| YP_164280.1 | NC_006552_p16 | exonuclease | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | -1 | 11509 | 12114 |
| YP_164313.1 | NC_006552_p49 | hypothetical protein | phrog_11163 | unknown function | unknown function | 1 | 33981 | 34406 |
| YP_164294.1 | NC_006552_p30 | Cro-like protein | phrog_35 | transcriptional repressor | transcription regulation | 1 | 18961 | 19161 |
| YP_164286.1 | NC_006552_p22 | hypothetical protein | phrog_6125 | unknown function | unknown function | -1 | 15437 | 15586 |
| YP_164324.1 | NC_006552_p60 | hypothetical protein | phrog_21376 | unknown function | unknown function | 1 | 54250 | 59199 |
| YP_164310.1 | NC_006552_p46 | hypothetical protein | phrog_399 | structural protein | head and packaging | 1 | 32689 | 33366 |
| YP_164312.1 | NC_006552_p48 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 33550 | 33957 |
| YP_164298.1 | NC_006552_p34 | hypothetical protein | phrog_319 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | 1 | 21016 | 21567 |