Genomic map of Pseudomonas virus F116 (NC_006552)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_006552
Definition
Pseudomonas phage F116, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Hollowayvirus.
DB of origin
REFSEQ
Length
65195
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
70
%GC
63.17
Number of singletons
7
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_164306.1 NC_006552_p42 hypothetical protein phrog_479 unknown function unknown function 1 28782 29912
YP_164305.1 NC_006552_p41 hypothetical protein phrog_26238 unknown function unknown function 1 27709 28620
YP_164282.1 NC_006552_p18 hypothetical protein phrog_16469 unknown function unknown function -1 12826 13842
YP_164333.1 NC_006552_p69 hypothetical protein phrog_8717 unknown function unknown function -1 63024 63539
YP_164287.1 NC_006552_p23 hypothetical protein phrog_1934 unknown function unknown function -1 15583 16053
YP_164297.1 NC_006552_p33 hypothetical protein phrog_6028 unknown function unknown function 1 20166 21023
YP_164275.1 NC_006552_p11 DNA adenine methyltransferase phrog_56 DNA methyltransferase other -1 7766 8620
YP_164332.1 NC_006552_p68 hypothetical protein phrog_38460 unknown function unknown function -1 62743 62835
YP_164330.1 NC_006552_p66 hypothetical protein phrog_3944 unknown function unknown function 1 61799 62065
YP_164269.1 NC_006552_p5 hypothetical protein phrog_15779 unknown function unknown function -1 2408 3169
YP_164322.1 NC_006552_p58 hypothetical protein phrog_11341 unknown function unknown function 1 45869 47896
YP_164293.1 NC_006552_p29 transcriptional regulator phrog_4 transcriptional repressor transcription regulation -1 18056 18853
YP_164278.1 NC_006552_p14 RdgC exonuclease phrog_724 exonuclease recombination-associated DNA, RNA and nucleotide metabolism -1 10050 10973
YP_164325.1 NC_006552_p61 holin phrog_4237 holin lysis 1 59294 59551
YP_164334.1 NC_006552_p70 integrase phrog_1 integrase integration and excision 1 63960 65195
YP_164267.1 NC_006552_p3 hypothetical protein singleton unknown function unknown function -1 1188 1610
YP_164309.1 NC_006552_p45 hypothetical protein phrog_11782 unknown function unknown function 1 31820 32692
YP_164316.1 NC_006552_p52 hypothetical protein phrog_8040 head closure Hc3 connector 1 38229 39419
YP_164291.1 NC_006552_p27 hypothetical protein phrog_15496 unknown function unknown function -1 17168 17341
YP_164329.1 NC_006552_p65 hypothetical protein phrog_22880 unknown function unknown function 1 61207 61626
YP_164288.1 NC_006552_p24 regulatory protein phrog_5527 transcriptional regulator transcription regulation -1 16229 16600
YP_164279.1 NC_006552_p15 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 11002 11505
YP_164314.1 NC_006552_p50 hypothetical protein phrog_14189 unknown function unknown function 1 34406 35263
YP_164304.1 NC_006552_p40 portal protein phrog_156 portal protein head and packaging 1 25312 27630
YP_164290.1 NC_006552_p26 hypothetical protein phrog_12273 unknown function unknown function -1 16912 17118
YP_164319.1 NC_006552_p55 hypothetical protein singleton unknown function unknown function 1 42672 43022
YP_164273.1 NC_006552_p9 DNA adenine methyltransferase phrog_5172 unknown function unknown function -1 4903 5709
YP_164277.1 NC_006552_p13 nucleoid-associated protein phrog_3767 nucleoid associated protein DNA, RNA and nucleotide metabolism -1 8968 10023
YP_164265.1 NC_006552_p1 hypothetical protein phrog_7614 unknown function unknown function -1 186 656
YP_164315.1 NC_006552_p51 hypothetical protein phrog_11272 unknown function unknown function 1 35266 38229
YP_164268.1 NC_006552_p4 hypothetical protein singleton unknown function unknown function -1 2007 2213
YP_164274.1 NC_006552_p10 DNA cytosine methyltransferase phrog_116 DNA methyltransferase other -1 5706 7769
YP_164295.1 NC_006552_p31 hypothetical protein singleton unknown function unknown function 1 19459 19665
YP_164326.1 NC_006552_p62 lysozyme phrog_7 endolysin lysis 1 59535 60068
YP_164317.1 NC_006552_p53 hypothetical protein phrog_8123 unknown function unknown function 1 39487 40077
YP_164283.1 NC_006552_p19 hypothetical protein phrog_7838 exonuclease DNA, RNA and nucleotide metabolism -1 13847 14602
YP_164302.1 NC_006552_p38 terminase small subunit phrog_51 terminase small subunit head and packaging 1 22851 23666
YP_164271.1 NC_006552_p7 hypothetical protein phrog_874 unknown function unknown function -1 3804 4481
YP_164303.1 NC_006552_p39 terminase large subunit phrog_2 terminase large subunit head and packaging 1 23670 25301
YP_164321.1 NC_006552_p57 hypothetical protein singleton unknown function unknown function 1 43834 45648
YP_164307.1 NC_006552_p43 virion structural protein phrog_334 major head protein head and packaging 1 29925 31217
YP_164272.1 NC_006552_p8 hypothetical protein phrog_3190 unknown function unknown function -1 4478 4906
YP_164318.1 NC_006552_p54 hypothetical protein phrog_11362 unknown function unknown function 1 40172 42679
YP_164289.1 NC_006552_p25 hypothetical protein phrog_9165 unknown function unknown function -1 16635 16847
YP_164266.1 NC_006552_p2 hypothetical protein phrog_10312 unknown function unknown function -1 724 1206
YP_164327.1 NC_006552_p63 hypothetical protein phrog_13 Rz-like spanin lysis 1 60065 60583
YP_164323.1 NC_006552_p59 hypothetical protein phrog_15406 DNA methyltransferase other 1 47838 54227
YP_164270.1 NC_006552_p6 hypothetical protein phrog_2457 unknown function unknown function -1 3166 3807
YP_164292.1 NC_006552_p28 hypothetical protein phrog_2707 unknown function unknown function 1 17753 18019
YP_164276.1 NC_006552_p12 LexA-like protein phrog_3502 unknown function unknown function -1 8762 8971
YP_164331.1 NC_006552_p67 hypothetical protein phrog_1599 unknown function unknown function -1 62047 62733
YP_164285.1 NC_006552_p21 hypothetical protein phrog_6033 unknown function unknown function -1 15232 15453
YP_164320.1 NC_006552_p56 hypothetical protein singleton unknown function unknown function 1 43229 43834
YP_164308.1 NC_006552_p44 virion structural protein phrog_8260 virion structural protein head and packaging 1 31276 31755
YP_164300.1 NC_006552_p36 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 21884 22231
YP_164311.1 NC_006552_p47 hypothetical protein phrog_8397 CsrA-like regulator transcription regulation 1 33363 33569
YP_164296.1 NC_006552_p32 hypothetical protein singleton unknown function unknown function 1 19700 20179
YP_164281.1 NC_006552_p17 hypothetical protein phrog_30798 unknown function unknown function -1 12224 12778
YP_164301.1 NC_006552_p37 hypothetical protein phrog_8117 unknown function unknown function 1 22231 22725
YP_164328.1 NC_006552_p64 hypothetical protein phrog_1954 virion structural protein head and packaging 1 60594 61187
YP_164284.1 NC_006552_p20 hypothetical protein phrog_31234 unknown function unknown function -1 14599 15072
YP_164299.1 NC_006552_p35 hypothetical protein phrog_131 HNH endonuclease DNA, RNA and nucleotide metabolism 1 21567 21887
YP_164280.1 NC_006552_p16 exonuclease phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism -1 11509 12114
YP_164313.1 NC_006552_p49 hypothetical protein phrog_11163 unknown function unknown function 1 33981 34406
YP_164294.1 NC_006552_p30 Cro-like protein phrog_35 transcriptional repressor transcription regulation 1 18961 19161
YP_164286.1 NC_006552_p22 hypothetical protein phrog_6125 unknown function unknown function -1 15437 15586
YP_164324.1 NC_006552_p60 hypothetical protein phrog_21376 unknown function unknown function 1 54250 59199
YP_164310.1 NC_006552_p46 hypothetical protein phrog_399 structural protein head and packaging 1 32689 33366
YP_164312.1 NC_006552_p48 hypothetical protein phrog_644 unknown function unknown function 1 33550 33957
YP_164298.1 NC_006552_p34 hypothetical protein phrog_319 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 21016 21567