Genomic map of Bacillus phage BCJA1c (NC_006557)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_006557
Definition
Bacillus phage BCJA1c, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
41092
Host Name
Bacillus clarkii
Host domain
Bacteria
Is prophage?
undef
Number of proteins
58
%GC
41.74
Number of singletons
18
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_164431.1 NC_006557_p52 host specificity protein phrog_1330 tail protein tail 1 34101 38438
YP_164391.1 NC_006557_p12 hypothetical protein phrog_1499 unknown function unknown function 1 5903 7207
YP_164437.1 NC_006557_p58 lysin phrog_17214 endolysin lysis 1 39991 41058
YP_164402.1 NC_006557_p23 rus phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 15874 16269
YP_164385.1 NC_006557_p6 cro phrog_3 transcriptional repressor transcription regulation 1 3603 3785
YP_164434.1 NC_006557_p55 hypothetical protein phrog_15236 unknown function unknown function 1 39204 39536
YP_164427.1 NC_006557_p48 tail tape measure protein phrog_1686 tail length tape measure protein tail 1 28858 32529
YP_164384.1 NC_006557_p5 repressor phrog_8 transcriptional regulator transcription regulation -1 2859 3284
YP_164400.1 NC_006557_p21 hypothetical protein phrog_2597 DNA primase DNA, RNA and nucleotide metabolism 1 12707 14929
YP_164419.1 NC_006557_p40 hypothetical protein singleton unknown function unknown function 1 25665 25841
YP_164403.1 NC_006557_p24 hypothetical protein phrog_3745 unknown function unknown function 1 16275 16496
YP_164417.1 NC_006557_p38 scaffold phrog_194 head scaffolding protein head and packaging 1 24124 24690
YP_164436.1 NC_006557_p57 hypothetical protein phrog_22805 unknown function unknown function 1 39812 39991
YP_164395.1 NC_006557_p16 hypothetical protein singleton unknown function unknown function 1 10522 11262
YP_164382.1 NC_006557_p3 integrase phrog_1 integrase integration and excision -1 1293 2403
YP_164430.1 NC_006557_p51 hypothetical protein singleton unknown function unknown function 1 33473 33832
YP_164429.1 NC_006557_p50 hypothetical protein singleton unknown function unknown function 1 33230 33430
YP_164406.1 NC_006557_p27 hypothetical protein phrog_599 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover 1 17235 17495
YP_164388.1 NC_006557_p9 hypothetical protein singleton unknown function unknown function 1 4653 5204
YP_164394.1 NC_006557_p15 DEAD box family helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 8883 10463
YP_164416.1 NC_006557_p37 hypothetical protein phrog_3915 unknown function unknown function 1 23749 23997
YP_164396.1 NC_006557_p17 hypothetical protein phrog_11013 unknown function unknown function 1 11252 11479
YP_164397.1 NC_006557_p18 hypothetical protein phrog_6615 DNA polymerase DNA, RNA and nucleotide metabolism 1 11502 12158
YP_164414.1 NC_006557_p35 hypothetical protein singleton unknown function unknown function 1 22400 22510
YP_164410.1 NC_006557_p31 hypothetical protein singleton unknown function unknown function 1 18265 18585
YP_164407.1 NC_006557_p28 hypothetical protein singleton unknown function unknown function 1 17736 17858
YP_164390.1 NC_006557_p11 hypothetical protein singleton unknown function unknown function 1 5509 5826
YP_164415.1 NC_006557_p36 hypothetical protein phrog_581 minor head protein head and packaging 1 22515 23696
YP_164393.1 NC_006557_p14 hypothetical protein phrog_2698 unknown function unknown function 1 8315 8872
YP_164413.1 NC_006557_p34 portal phrog_533 portal protein head and packaging 1 20841 22394
YP_164380.1 NC_006557_p1 hypothetical protein singleton unknown function unknown function -1 125 406
YP_164408.1 NC_006557_p29 hypothetical protein singleton unknown function unknown function 1 17880 17996
YP_164387.1 NC_006557_p8 hypothetical protein singleton unknown function unknown function 1 4390 4653
YP_164404.1 NC_006557_p25 hypothetical protein singleton unknown function unknown function 1 16493 16675
YP_164381.1 NC_006557_p2 hypothetical protein singleton unknown function unknown function 1 471 1010
YP_164412.1 NC_006557_p33 terminase large subunit phrog_2 terminase large subunit head and packaging 1 19468 20829
YP_164423.1 NC_006557_p44 hypothetical protein phrog_913 minor head protein head and packaging 1 26931 27326
YP_164435.1 NC_006557_p56 holin phrog_1129 holin lysis 1 39552 39815
YP_164424.1 NC_006557_p45 tail shaft protein phrog_820 major tail protein tail 1 27330 27788
YP_164401.1 NC_006557_p22 hypothetical protein phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 15254 15874
YP_164386.1 NC_006557_p7 hypothetical protein singleton unknown function unknown function 1 4139 4351
YP_164432.1 NC_006557_p53 hypothetical protein phrog_1401 unknown function unknown function 1 38453 38896
YP_164425.1 NC_006557_p46 hypothetical protein phrog_1061 unknown function unknown function 1 27833 28285
YP_164389.1 NC_006557_p10 hypothetical protein singleton unknown function unknown function 1 5209 5496
YP_164399.1 NC_006557_p20 hypothetical protein phrog_98 unknown function unknown function 1 12293 12682
YP_164398.1 NC_006557_p19 hypothetical protein singleton unknown function unknown function 1 12174 12296
YP_164420.1 NC_006557_p41 hypothetical protein phrog_541 head-tail adaptor connector 1 25872 26270
YP_164422.1 NC_006557_p43 hypothetical protein phrog_556 minor head protein head and packaging 1 26605 26931
YP_164428.1 NC_006557_p49 hypothetical protein phrog_33 distal tail protein Dit tail 1 32526 33218
YP_164433.1 NC_006557_p54 hypothetical protein phrog_30730 unknown function unknown function 1 38896 39141
YP_164418.1 NC_006557_p39 major capsid protein phrog_840 major head protein head and packaging 1 24710 25654
YP_164392.1 NC_006557_p13 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 7207 8295
YP_164411.1 NC_006557_p32 terminase small subunit phrog_2606 terminase small subunit head and packaging 1 18645 19478
YP_164383.1 NC_006557_p4 hypothetical protein phrog_87 metallo-protease other -1 2437 2847
YP_164409.1 NC_006557_p30 hypothetical protein singleton unknown function unknown function 1 18101 18358
YP_164421.1 NC_006557_p42 hypothetical protein phrog_793 head-tail adaptor connector 1 26264 26605
YP_164426.1 NC_006557_p47 hypothetical protein phrog_706 unknown function unknown function 1 28294 28857
YP_164405.1 NC_006557_p26 hypothetical protein phrog_1558 unknown function unknown function 1 16679 17194