| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_006557 |
Definition |
Bacillus phage BCJA1c, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
41092 |
Host Name |
Bacillus clarkii |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
58 |
%GC |
41.74 |
Number of singletons |
18 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_164431.1 | NC_006557_p52 | host specificity protein | phrog_1330 | tail protein | tail | 1 | 34101 | 38438 |
| YP_164391.1 | NC_006557_p12 | hypothetical protein | phrog_1499 | unknown function | unknown function | 1 | 5903 | 7207 |
| YP_164437.1 | NC_006557_p58 | lysin | phrog_17214 | endolysin | lysis | 1 | 39991 | 41058 |
| YP_164402.1 | NC_006557_p23 | rus | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 15874 | 16269 |
| YP_164385.1 | NC_006557_p6 | cro | phrog_3 | transcriptional repressor | transcription regulation | 1 | 3603 | 3785 |
| YP_164434.1 | NC_006557_p55 | hypothetical protein | phrog_15236 | unknown function | unknown function | 1 | 39204 | 39536 |
| YP_164427.1 | NC_006557_p48 | tail tape measure protein | phrog_1686 | tail length tape measure protein | tail | 1 | 28858 | 32529 |
| YP_164384.1 | NC_006557_p5 | repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 2859 | 3284 |
| YP_164400.1 | NC_006557_p21 | hypothetical protein | phrog_2597 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 12707 | 14929 |
| YP_164419.1 | NC_006557_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25665 | 25841 |
| YP_164403.1 | NC_006557_p24 | hypothetical protein | phrog_3745 | unknown function | unknown function | 1 | 16275 | 16496 |
| YP_164417.1 | NC_006557_p38 | scaffold | phrog_194 | head scaffolding protein | head and packaging | 1 | 24124 | 24690 |
| YP_164436.1 | NC_006557_p57 | hypothetical protein | phrog_22805 | unknown function | unknown function | 1 | 39812 | 39991 |
| YP_164395.1 | NC_006557_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10522 | 11262 |
| YP_164382.1 | NC_006557_p3 | integrase | phrog_1 | integrase | integration and excision | -1 | 1293 | 2403 |
| YP_164430.1 | NC_006557_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33473 | 33832 |
| YP_164429.1 | NC_006557_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33230 | 33430 |
| YP_164406.1 | NC_006557_p27 | hypothetical protein | phrog_599 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | 1 | 17235 | 17495 |
| YP_164388.1 | NC_006557_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4653 | 5204 |
| YP_164394.1 | NC_006557_p15 | DEAD box family helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 8883 | 10463 |
| YP_164416.1 | NC_006557_p37 | hypothetical protein | phrog_3915 | unknown function | unknown function | 1 | 23749 | 23997 |
| YP_164396.1 | NC_006557_p17 | hypothetical protein | phrog_11013 | unknown function | unknown function | 1 | 11252 | 11479 |
| YP_164397.1 | NC_006557_p18 | hypothetical protein | phrog_6615 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 11502 | 12158 |
| YP_164414.1 | NC_006557_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22400 | 22510 |
| YP_164410.1 | NC_006557_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18265 | 18585 |
| YP_164407.1 | NC_006557_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17736 | 17858 |
| YP_164390.1 | NC_006557_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5509 | 5826 |
| YP_164415.1 | NC_006557_p36 | hypothetical protein | phrog_581 | minor head protein | head and packaging | 1 | 22515 | 23696 |
| YP_164393.1 | NC_006557_p14 | hypothetical protein | phrog_2698 | unknown function | unknown function | 1 | 8315 | 8872 |
| YP_164413.1 | NC_006557_p34 | portal | phrog_533 | portal protein | head and packaging | 1 | 20841 | 22394 |
| YP_164380.1 | NC_006557_p1 | hypothetical protein | singleton | unknown function | unknown function | -1 | 125 | 406 |
| YP_164408.1 | NC_006557_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17880 | 17996 |
| YP_164387.1 | NC_006557_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4390 | 4653 |
| YP_164404.1 | NC_006557_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16493 | 16675 |
| YP_164381.1 | NC_006557_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 471 | 1010 |
| YP_164412.1 | NC_006557_p33 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 19468 | 20829 |
| YP_164423.1 | NC_006557_p44 | hypothetical protein | phrog_913 | minor head protein | head and packaging | 1 | 26931 | 27326 |
| YP_164435.1 | NC_006557_p56 | holin | phrog_1129 | holin | lysis | 1 | 39552 | 39815 |
| YP_164424.1 | NC_006557_p45 | tail shaft protein | phrog_820 | major tail protein | tail | 1 | 27330 | 27788 |
| YP_164401.1 | NC_006557_p22 | hypothetical protein | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 15254 | 15874 |
| YP_164386.1 | NC_006557_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4139 | 4351 |
| YP_164432.1 | NC_006557_p53 | hypothetical protein | phrog_1401 | unknown function | unknown function | 1 | 38453 | 38896 |
| YP_164425.1 | NC_006557_p46 | hypothetical protein | phrog_1061 | unknown function | unknown function | 1 | 27833 | 28285 |
| YP_164389.1 | NC_006557_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5209 | 5496 |
| YP_164399.1 | NC_006557_p20 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 12293 | 12682 |
| YP_164398.1 | NC_006557_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12174 | 12296 |
| YP_164420.1 | NC_006557_p41 | hypothetical protein | phrog_541 | head-tail adaptor | connector | 1 | 25872 | 26270 |
| YP_164422.1 | NC_006557_p43 | hypothetical protein | phrog_556 | minor head protein | head and packaging | 1 | 26605 | 26931 |
| YP_164428.1 | NC_006557_p49 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 32526 | 33218 |
| YP_164433.1 | NC_006557_p54 | hypothetical protein | phrog_30730 | unknown function | unknown function | 1 | 38896 | 39141 |
| YP_164418.1 | NC_006557_p39 | major capsid protein | phrog_840 | major head protein | head and packaging | 1 | 24710 | 25654 |
| YP_164392.1 | NC_006557_p13 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 7207 | 8295 |
| YP_164411.1 | NC_006557_p32 | terminase small subunit | phrog_2606 | terminase small subunit | head and packaging | 1 | 18645 | 19478 |
| YP_164383.1 | NC_006557_p4 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 2437 | 2847 |
| YP_164409.1 | NC_006557_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18101 | 18358 |
| YP_164421.1 | NC_006557_p42 | hypothetical protein | phrog_793 | head-tail adaptor | connector | 1 | 26264 | 26605 |
| YP_164426.1 | NC_006557_p47 | hypothetical protein | phrog_706 | unknown function | unknown function | 1 | 28294 | 28857 |
| YP_164405.1 | NC_006557_p26 | hypothetical protein | phrog_1558 | unknown function | unknown function | 1 | 16679 | 17194 |