| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_006940 |
Definition |
Salmonella phage SS3e, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus. |
DB of origin |
REFSEQ |
Length |
40793 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
58 |
%GC |
50.07 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_224025.1 | NC_006940_p5 | protein of an unannotated phage | phrog_477 | head-tail adaptor Ad1 | connector | -1 | 2667 | 3176 |
| YP_224043.2 | NC_006940_p23 | protein of an unannotated phage | phrog_4684 | unknown function | unknown function | -1 | 13685 | 13855 |
| YP_224063.1 | NC_006940_p41 | protein of an unannotated phage | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 24693 | 26078 |
| YP_224067.1 | NC_006940_p45 | protein of an unannotated phage | phrog_4879 | unknown function | unknown function | 1 | 28201 | 28392 |
| YP_224023.1 | NC_006940_p3 | protein of an unannotated phage | phrog_161 | head closure Hc1 | connector | -1 | 1699 | 1935 |
| YP_224059.1 | NC_006940_p37 | protein of an unannotated phage | phrog_20588 | unknown function | unknown function | 1 | 22307 | 22654 |
| YP_224021.1 | NC_006940_p1 | protein of an unannotated phage | phrog_179 | tail terminator | connector | -1 | 888 | 1307 |
| YP_224066.1 | NC_006940_p44 | protein of an unannotated phage | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 27881 | 28168 |
| YP_224069.1 | NC_006940_p47 | protein of an unannotated phage | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 28884 | 30308 |
| YP_224039.1 | NC_006940_p19 | protein of an unannotated phage | phrog_2531 | unknown function | unknown function | -1 | 12788 | 13090 |
| YP_308658.1 | NC_006940_p57 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 39439 | 39696 |
| YP_224027.1 | NC_006940_p7 | protein of an unannotated phage | phrog_4069 | Hoc-like head decoration | head and packaging | -1 | 3405 | 3755 |
| YP_224054.2 | NC_006940_p32 | protein of an unannotated phage | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 18429 | 18641 |
| YP_224046.1 | NC_006940_p26 | protein of an unannotated phage | phrog_2508 | holin | lysis | -1 | 14832 | 15119 |
| YP_224030.1 | NC_006940_p10 | protein of an unannotated phage | phrog_206 | head scaffolding protein | head and packaging | -1 | 5165 | 5866 |
| YP_224041.1 | NC_006940_p21 | protein of an unannotated phage | phrog_10200 | unknown function | unknown function | -1 | 13311 | 13460 |
| YP_224044.1 | NC_006940_p24 | protein of an unannotated phage | phrog_2180 | unknown function | unknown function | -1 | 13993 | 14178 |
| YP_308657.1 | NC_006940_p56 | protein of an unannotated phage | phrog_4557 | unknown function | unknown function | -1 | 38965 | 39324 |
| YP_224061.1 | NC_006940_p39 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 24008 | 24250 |
| YP_224048.1 | NC_006940_p28 | protein of an unannotated phage | phrog_4947 | unknown function | unknown function | -1 | 15923 | 16288 |
| YP_224074.2 | NC_006940_p51 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 34963 | 35199 |
| YP_224070.1 | NC_006940_p48 | protein of an unannotated phage | phrog_13851 | unknown function | unknown function | 1 | 30305 | 30526 |
| YP_224045.1 | NC_006940_p25 | protein of an unannotated phage | phrog_7 | endolysin | lysis | -1 | 14363 | 14851 |
| YP_308659.1 | NC_006940_p58 | protein of an unannotated phage | phrog_1039 | immunity to superinfection | moron, auxiliary metabolic gene and host takeover | 1 | 39918 | 40094 |
| YP_224031.1 | NC_006940_p11 | protein of an unannotated phage | phrog_2536 | Rz-like spanin | lysis | -1 | 6057 | 6446 |
| YP_224047.1 | NC_006940_p27 | protein of an unannotated phage | phrog_1040 | peptidase HslV family | other | -1 | 15483 | 15917 |
| YP_224028.1 | NC_006940_p8 | protein of an unannotated phage | phrog_4366 | head fiber protein | head and packaging | -1 | 3767 | 4051 |
| YP_224050.1 | NC_006940_p30 | protein of an unannotated phage | phrog_6094 | unknown function | unknown function | -1 | 16485 | 17000 |
| YP_224060.1 | NC_006940_p38 | protein of an unannotated phage | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 22651 | 23934 |
| YP_224058.1 | NC_006940_p36 | protein of an unannotated phage | phrog_3127 | unknown function | unknown function | 1 | 21553 | 21996 |
| YP_224076.1 | NC_006940_p53 | protein of an unannotated phage | phrog_396 | minor tail protein | tail | -1 | 35625 | 36140 |
| YP_308656.1 | NC_006940_p55 | protein of an unannotated phage | phrog_1538 | tail length tape measure protein | tail | -1 | 36639 | 38972 |
| YP_224032.1 | NC_006940_p12 | protein of an unannotated phage | phrog_3945 | Hoc-like head decoration | head and packaging | -1 | 6764 | 7222 |
| YP_224037.2 | NC_006940_p17 | protein of an unannotated phage | phrog_3064 | terminase | head and packaging | -1 | 11882 | 12388 |
| YP_224049.1 | NC_006940_p29 | protein of an unannotated phage | phrog_3766 | unknown function | unknown function | -1 | 16285 | 16488 |
| YP_224062.1 | NC_006940_p40 | protein of an unannotated phage | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 24255 | 24635 |
| YP_224065.1 | NC_006940_p43 | protein of an unannotated phage | phrog_7766 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 26873 | 27793 |
| YP_224035.1 | NC_006940_p15 | protein of an unannotated phage | phrog_145 | portal protein | head and packaging | -1 | 9133 | 10608 |
| YP_224057.1 | NC_006940_p35 | protein of an unannotated phage | phrog_3 | transcriptional repressor | transcription regulation | -1 | 21130 | 21294 |
| YP_224038.1 | NC_006940_p18 | protein of an unannotated phage | phrog_28764 | unknown function | unknown function | -1 | 12684 | 12791 |
| YP_224052.1 | NC_006940_p31 | protein of an unannotated phage | phrog_29113 | unknown function | unknown function | -1 | 17084 | 17197 |
| YP_224034.1 | NC_006940_p14 | protein of an unannotated phage | phrog_6095 | amidase | lysis | 1 | 8563 | 9102 |
| YP_224071.2 | NC_006940_p49 | protein of an unannotated phage | phrog_1819 | tail spike protein | tail | -1 | 30645 | 32699 |
| YP_224026.1 | NC_006940_p6 | protein of an unannotated phage | phrog_4451 | unknown function | unknown function | -1 | 3180 | 3368 |
| YP_224056.1 | NC_006940_p34 | protein of an unannotated phage | phrog_3228 | replicative helicase-primase | DNA, RNA and nucleotide metabolism | 1 | 18929 | 21115 |
| YP_224040.1 | NC_006940_p20 | protein of an unannotated phage | phrog_268 | unknown function | unknown function | -1 | 13090 | 13314 |
| YP_308655.1 | NC_006940_p54 | protein of an unannotated phage | phrog_384 | virion structural protein | head and packaging | -1 | 36137 | 36637 |
| YP_224055.1 | NC_006940_p33 | protein of an unannotated phage | phrog_5169 | unknown function | unknown function | 1 | 18638 | 18871 |
| YP_224036.1 | NC_006940_p16 | protein of an unannotated phage | phrog_2 | terminase large subunit | head and packaging | -1 | 10621 | 11892 |
| YP_224073.2 | NC_006940_p50 | protein of an unannotated phage | phrog_469 | tail protein | tail | -1 | 32712 | 34841 |
| YP_224075.1 | NC_006940_p52 | protein of an unannotated phage | phrog_329 | minor tail protein | tail | -1 | 35262 | 35525 |
| YP_224022.1 | NC_006940_p2 | protein of an unannotated phage | phrog_169 | tail completion or Neck1 protein | connector | -1 | 1307 | 1702 |
| YP_224024.1 | NC_006940_p4 | protein of an unannotated phage | phrog_3614 | unknown function | unknown function | -1 | 2059 | 2664 |
| YP_224033.1 | NC_006940_p13 | protein of an unannotated phage | phrog_241 | head morphogenesis | head and packaging | -1 | 7225 | 8268 |
| YP_224068.1 | NC_006940_p46 | protein of an unannotated phage | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 28389 | 28790 |
| YP_224064.2 | NC_006940_p42 | protein of an unannotated phage | phrog_374 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 26065 | 26871 |
| YP_224042.1 | NC_006940_p22 | protein of an unannotated phage | phrog_1402 | unknown function | unknown function | -1 | 13464 | 13688 |
| YP_224029.1 | NC_006940_p9 | protein of an unannotated phage | phrog_247 | major head protein | head and packaging | -1 | 4112 | 5161 |