Genomic map of Salmonella phage SS3e (NC_006940)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_006940
Definition
Salmonella phage SS3e, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus.
DB of origin
REFSEQ
Length
40793
Host Name
Salmonella enterica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
58
%GC
50.07
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_224025.1 NC_006940_p5 protein of an unannotated phage phrog_477 head-tail adaptor Ad1 connector -1 2667 3176
YP_224043.2 NC_006940_p23 protein of an unannotated phage phrog_4684 unknown function unknown function -1 13685 13855
YP_224063.1 NC_006940_p41 protein of an unannotated phage phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 24693 26078
YP_224067.1 NC_006940_p45 protein of an unannotated phage phrog_4879 unknown function unknown function 1 28201 28392
YP_224023.1 NC_006940_p3 protein of an unannotated phage phrog_161 head closure Hc1 connector -1 1699 1935
YP_224059.1 NC_006940_p37 protein of an unannotated phage phrog_20588 unknown function unknown function 1 22307 22654
YP_224021.1 NC_006940_p1 protein of an unannotated phage phrog_179 tail terminator connector -1 888 1307
YP_224066.1 NC_006940_p44 protein of an unannotated phage phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 27881 28168
YP_224069.1 NC_006940_p47 protein of an unannotated phage phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 28884 30308
YP_224039.1 NC_006940_p19 protein of an unannotated phage phrog_2531 unknown function unknown function -1 12788 13090
YP_308658.1 NC_006940_p57 protein of an unannotated phage singleton unknown function unknown function -1 39439 39696
YP_224027.1 NC_006940_p7 protein of an unannotated phage phrog_4069 Hoc-like head decoration head and packaging -1 3405 3755
YP_224054.2 NC_006940_p32 protein of an unannotated phage phrog_66 excisionase and transcriptional regulator integration and excision 1 18429 18641
YP_224046.1 NC_006940_p26 protein of an unannotated phage phrog_2508 holin lysis -1 14832 15119
YP_224030.1 NC_006940_p10 protein of an unannotated phage phrog_206 head scaffolding protein head and packaging -1 5165 5866
YP_224041.1 NC_006940_p21 protein of an unannotated phage phrog_10200 unknown function unknown function -1 13311 13460
YP_224044.1 NC_006940_p24 protein of an unannotated phage phrog_2180 unknown function unknown function -1 13993 14178
YP_308657.1 NC_006940_p56 protein of an unannotated phage phrog_4557 unknown function unknown function -1 38965 39324
YP_224061.1 NC_006940_p39 protein of an unannotated phage singleton unknown function unknown function 1 24008 24250
YP_224048.1 NC_006940_p28 protein of an unannotated phage phrog_4947 unknown function unknown function -1 15923 16288
YP_224074.2 NC_006940_p51 protein of an unannotated phage singleton unknown function unknown function -1 34963 35199
YP_224070.1 NC_006940_p48 protein of an unannotated phage phrog_13851 unknown function unknown function 1 30305 30526
YP_224045.1 NC_006940_p25 protein of an unannotated phage phrog_7 endolysin lysis -1 14363 14851
YP_308659.1 NC_006940_p58 protein of an unannotated phage phrog_1039 immunity to superinfection moron, auxiliary metabolic gene and host takeover 1 39918 40094
YP_224031.1 NC_006940_p11 protein of an unannotated phage phrog_2536 Rz-like spanin lysis -1 6057 6446
YP_224047.1 NC_006940_p27 protein of an unannotated phage phrog_1040 peptidase HslV family other -1 15483 15917
YP_224028.1 NC_006940_p8 protein of an unannotated phage phrog_4366 head fiber protein head and packaging -1 3767 4051
YP_224050.1 NC_006940_p30 protein of an unannotated phage phrog_6094 unknown function unknown function -1 16485 17000
YP_224060.1 NC_006940_p38 protein of an unannotated phage phrog_69 exonuclease DNA, RNA and nucleotide metabolism 1 22651 23934
YP_224058.1 NC_006940_p36 protein of an unannotated phage phrog_3127 unknown function unknown function 1 21553 21996
YP_224076.1 NC_006940_p53 protein of an unannotated phage phrog_396 minor tail protein tail -1 35625 36140
YP_308656.1 NC_006940_p55 protein of an unannotated phage phrog_1538 tail length tape measure protein tail -1 36639 38972
YP_224032.1 NC_006940_p12 protein of an unannotated phage phrog_3945 Hoc-like head decoration head and packaging -1 6764 7222
YP_224037.2 NC_006940_p17 protein of an unannotated phage phrog_3064 terminase head and packaging -1 11882 12388
YP_224049.1 NC_006940_p29 protein of an unannotated phage phrog_3766 unknown function unknown function -1 16285 16488
YP_224062.1 NC_006940_p40 protein of an unannotated phage phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 24255 24635
YP_224065.1 NC_006940_p43 protein of an unannotated phage phrog_7766 DNA polymerase DNA, RNA and nucleotide metabolism 1 26873 27793
YP_224035.1 NC_006940_p15 protein of an unannotated phage phrog_145 portal protein head and packaging -1 9133 10608
YP_224057.1 NC_006940_p35 protein of an unannotated phage phrog_3 transcriptional repressor transcription regulation -1 21130 21294
YP_224038.1 NC_006940_p18 protein of an unannotated phage phrog_28764 unknown function unknown function -1 12684 12791
YP_224052.1 NC_006940_p31 protein of an unannotated phage phrog_29113 unknown function unknown function -1 17084 17197
YP_224034.1 NC_006940_p14 protein of an unannotated phage phrog_6095 amidase lysis 1 8563 9102
YP_224071.2 NC_006940_p49 protein of an unannotated phage phrog_1819 tail spike protein tail -1 30645 32699
YP_224026.1 NC_006940_p6 protein of an unannotated phage phrog_4451 unknown function unknown function -1 3180 3368
YP_224056.1 NC_006940_p34 protein of an unannotated phage phrog_3228 replicative helicase-primase DNA, RNA and nucleotide metabolism 1 18929 21115
YP_224040.1 NC_006940_p20 protein of an unannotated phage phrog_268 unknown function unknown function -1 13090 13314
YP_308655.1 NC_006940_p54 protein of an unannotated phage phrog_384 virion structural protein head and packaging -1 36137 36637
YP_224055.1 NC_006940_p33 protein of an unannotated phage phrog_5169 unknown function unknown function 1 18638 18871
YP_224036.1 NC_006940_p16 protein of an unannotated phage phrog_2 terminase large subunit head and packaging -1 10621 11892
YP_224073.2 NC_006940_p50 protein of an unannotated phage phrog_469 tail protein tail -1 32712 34841
YP_224075.1 NC_006940_p52 protein of an unannotated phage phrog_329 minor tail protein tail -1 35262 35525
YP_224022.1 NC_006940_p2 protein of an unannotated phage phrog_169 tail completion or Neck1 protein connector -1 1307 1702
YP_224024.1 NC_006940_p4 protein of an unannotated phage phrog_3614 unknown function unknown function -1 2059 2664
YP_224033.1 NC_006940_p13 protein of an unannotated phage phrog_241 head morphogenesis head and packaging -1 7225 8268
YP_224068.1 NC_006940_p46 protein of an unannotated phage phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 28389 28790
YP_224064.2 NC_006940_p42 protein of an unannotated phage phrog_374 HNH endonuclease DNA, RNA and nucleotide metabolism 1 26065 26871
YP_224042.1 NC_006940_p22 protein of an unannotated phage phrog_1402 unknown function unknown function -1 13464 13688
YP_224029.1 NC_006940_p9 protein of an unannotated phage phrog_247 major head protein head and packaging -1 4112 5161