| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_006953 |
Definition |
Listonella phage phiHSIC, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
37966 |
Host Name |
Listonella pelagia |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
47 |
%GC |
43.96 |
Number of singletons |
11 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_224264.1 | NC_006953_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25708 | 25905 |
| YP_224259.1 | NC_006953_p31 | tail tape measure protein | phrog_24709 | tail length tape measure protein | tail | 1 | 17022 | 20231 |
| YP_224243.1 | NC_006953_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8258 | 8662 |
| YP_224239.1 | NC_006953_p11 | hypothetical protein | phrog_409 | transcriptional regulator | transcription regulation | 1 | 5104 | 5325 |
| YP_224230.1 | NC_006953_p2 | DNA polymerase III beta subunit | phrog_3007 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 679 | 1254 |
| YP_224231.1 | NC_006953_p3 | hypothetical protein | phrog_33314 | unknown function | unknown function | 1 | 1393 | 1542 |
| YP_224232.1 | NC_006953_p4 | hypothetical protein | phrog_3600 | antimicrobial peptide resistance and lipid A acylation protein PagP | moron, auxiliary metabolic gene and host takeover | 1 | 1757 | 2101 |
| YP_224234.1 | NC_006953_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2374 | 2568 |
| YP_224244.1 | NC_006953_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8984 | 9313 |
| YP_224258.1 | NC_006953_p30 | hypothetical protein | phrog_27352 | unknown function | unknown function | -1 | 16452 | 16928 |
| YP_224249.1 | NC_006953_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12164 | 12445 |
| YP_224242.1 | NC_006953_p14 | NAD-asparagine ribosyltransferase | phrog_241 | head morphogenesis | head and packaging | 1 | 7182 | 8252 |
| YP_224233.1 | NC_006953_p5 | hypothetical protein | phrog_22049 | unknown function | unknown function | 1 | 2095 | 2328 |
| YP_224266.1 | NC_006953_p38 | hypothetical protein | phrog_30571 | unknown function | unknown function | -1 | 26940 | 27488 |
| YP_224255.1 | NC_006953_p27 | hypothetical protein | phrog_158 | major tail protein | tail | 1 | 14985 | 15461 |
| YP_224250.1 | NC_006953_p22 | hypothetical protein | phrog_4652 | unknown function | unknown function | -1 | 12474 | 13058 |
| YP_224271.1 | NC_006953_p43 | hypothetical protein | phrog_3007 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 31723 | 32265 |
| YP_224273.1 | NC_006953_p45 | hypothetical protein | phrog_9002 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 33017 | 33550 |
| YP_224241.1 | NC_006953_p13 | hypothetical protein | singleton | unknown function | unknown function | -1 | 6829 | 7110 |
| YP_224274.1 | NC_006953_p46 | helicase subunit | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 33557 | 34315 |
| YP_224237.1 | NC_006953_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4354 | 4719 |
| YP_224262.1 | NC_006953_p34 | hypothetical protein | phrog_31681 | unknown function | unknown function | 1 | 24308 | 24643 |
| YP_224246.1 | NC_006953_p18 | major capsid protein | phrog_247 | major head protein | head and packaging | 1 | 10098 | 11045 |
| YP_224254.1 | NC_006953_p26 | hypothetical protein | phrog_25758 | unknown function | unknown function | 1 | 14485 | 14868 |
| YP_224235.1 | NC_006953_p7 | terminase small subunit | phrog_309 | terminase small subunit | head and packaging | 1 | 2586 | 3029 |
| YP_224238.1 | NC_006953_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4874 | 5107 |
| YP_224245.1 | NC_006953_p17 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 9382 | 10086 |
| YP_224267.1 | NC_006953_p39 | hypothetical protein | phrog_25039 | unknown function | unknown function | -1 | 27485 | 27829 |
| YP_224252.1 | NC_006953_p24 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 13654 | 14052 |
| YP_224253.1 | NC_006953_p25 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 14027 | 14485 |
| YP_224256.1 | NC_006953_p28 | hypothetical protein | phrog_20684 | unknown function | unknown function | 1 | 15530 | 16012 |
| YP_224268.1 | NC_006953_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28235 | 28564 |
| YP_224260.1 | NC_006953_p32 | hypothetical protein | phrog_34644 | unknown function | unknown function | 1 | 20231 | 21817 |
| YP_224261.1 | NC_006953_p33 | hemagglutinin protein | singleton | unknown function | unknown function | 1 | 21870 | 24275 |
| YP_224236.1 | NC_006953_p8 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 3010 | 4236 |
| YP_224270.1 | NC_006953_p42 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 28856 | 31717 |
| YP_224272.1 | NC_006953_p44 | hypothetical protein | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | -1 | 32262 | 33017 |
| YP_224275.1 | NC_006953_p47 | hypothetical protein | phrog_3022 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 34641 | 37088 |
| YP_224240.1 | NC_006953_p12 | structural protein | phrog_145 | portal protein | head and packaging | 1 | 5333 | 6799 |
| YP_224251.1 | NC_006953_p23 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 13153 | 13650 |
| YP_224229.1 | NC_006953_p1 | hypothetical protein | phrog_953 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2 | 625 |
| YP_224257.1 | NC_006953_p29 | hypothetical protein | phrog_18915 | unknown function | unknown function | 1 | 16024 | 16428 |
| YP_224248.1 | NC_006953_p20 | hypothetical protein | singleton | unknown function | unknown function | -1 | 11702 | 12130 |
| YP_224265.1 | NC_006953_p37 | phage lysozyme | phrog_7 | endolysin | lysis | -1 | 26214 | 26672 |
| YP_224269.1 | NC_006953_p41 | hypothetical protein | phrog_824 | unknown function | unknown function | -1 | 28476 | 28859 |
| YP_224263.1 | NC_006953_p35 | hypothetical protein | phrog_671 | nucleotide pyrophosphohydrolase | other | -1 | 24648 | 25079 |
| YP_224247.1 | NC_006953_p19 | hypothetical protein | phrog_13935 | unknown function | unknown function | 1 | 11073 | 11669 |