Genomic map of Listonella phage phiHSIC (NC_006953)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_006953
Definition
Listonella phage phiHSIC, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
37966
Host Name
Listonella pelagia
Host domain
Bacteria
Is prophage?
undef
Number of proteins
47
%GC
43.96
Number of singletons
11
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_224264.1 NC_006953_p36 hypothetical protein singleton unknown function unknown function 1 25708 25905
YP_224259.1 NC_006953_p31 tail tape measure protein phrog_24709 tail length tape measure protein tail 1 17022 20231
YP_224243.1 NC_006953_p15 hypothetical protein singleton unknown function unknown function 1 8258 8662
YP_224239.1 NC_006953_p11 hypothetical protein phrog_409 transcriptional regulator transcription regulation 1 5104 5325
YP_224230.1 NC_006953_p2 DNA polymerase III beta subunit phrog_3007 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 679 1254
YP_224231.1 NC_006953_p3 hypothetical protein phrog_33314 unknown function unknown function 1 1393 1542
YP_224232.1 NC_006953_p4 hypothetical protein phrog_3600 antimicrobial peptide resistance and lipid A acylation protein PagP moron, auxiliary metabolic gene and host takeover 1 1757 2101
YP_224234.1 NC_006953_p6 hypothetical protein singleton unknown function unknown function 1 2374 2568
YP_224244.1 NC_006953_p16 hypothetical protein singleton unknown function unknown function 1 8984 9313
YP_224258.1 NC_006953_p30 hypothetical protein phrog_27352 unknown function unknown function -1 16452 16928
YP_224249.1 NC_006953_p21 hypothetical protein singleton unknown function unknown function 1 12164 12445
YP_224242.1 NC_006953_p14 NAD-asparagine ribosyltransferase phrog_241 head morphogenesis head and packaging 1 7182 8252
YP_224233.1 NC_006953_p5 hypothetical protein phrog_22049 unknown function unknown function 1 2095 2328
YP_224266.1 NC_006953_p38 hypothetical protein phrog_30571 unknown function unknown function -1 26940 27488
YP_224255.1 NC_006953_p27 hypothetical protein phrog_158 major tail protein tail 1 14985 15461
YP_224250.1 NC_006953_p22 hypothetical protein phrog_4652 unknown function unknown function -1 12474 13058
YP_224271.1 NC_006953_p43 hypothetical protein phrog_3007 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 31723 32265
YP_224273.1 NC_006953_p45 hypothetical protein phrog_9002 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 33017 33550
YP_224241.1 NC_006953_p13 hypothetical protein singleton unknown function unknown function -1 6829 7110
YP_224274.1 NC_006953_p46 helicase subunit phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 33557 34315
YP_224237.1 NC_006953_p9 hypothetical protein singleton unknown function unknown function 1 4354 4719
YP_224262.1 NC_006953_p34 hypothetical protein phrog_31681 unknown function unknown function 1 24308 24643
YP_224246.1 NC_006953_p18 major capsid protein phrog_247 major head protein head and packaging 1 10098 11045
YP_224254.1 NC_006953_p26 hypothetical protein phrog_25758 unknown function unknown function 1 14485 14868
YP_224235.1 NC_006953_p7 terminase small subunit phrog_309 terminase small subunit head and packaging 1 2586 3029
YP_224238.1 NC_006953_p10 hypothetical protein singleton unknown function unknown function 1 4874 5107
YP_224245.1 NC_006953_p17 hypothetical protein phrog_206 head scaffolding protein head and packaging 1 9382 10086
YP_224267.1 NC_006953_p39 hypothetical protein phrog_25039 unknown function unknown function -1 27485 27829
YP_224252.1 NC_006953_p24 hypothetical protein phrog_161 head closure Hc1 connector 1 13654 14052
YP_224253.1 NC_006953_p25 hypothetical protein phrog_169 tail completion or Neck1 protein connector 1 14027 14485
YP_224256.1 NC_006953_p28 hypothetical protein phrog_20684 unknown function unknown function 1 15530 16012
YP_224268.1 NC_006953_p40 hypothetical protein singleton unknown function unknown function 1 28235 28564
YP_224260.1 NC_006953_p32 hypothetical protein phrog_34644 unknown function unknown function 1 20231 21817
YP_224261.1 NC_006953_p33 hemagglutinin protein singleton unknown function unknown function 1 21870 24275
YP_224236.1 NC_006953_p8 terminase large subunit phrog_2 terminase large subunit head and packaging 1 3010 4236
YP_224270.1 NC_006953_p42 helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 28856 31717
YP_224272.1 NC_006953_p44 hypothetical protein phrog_434 RecE-like recombination exonuclease DNA, RNA and nucleotide metabolism -1 32262 33017
YP_224275.1 NC_006953_p47 hypothetical protein phrog_3022 DNA primase DNA, RNA and nucleotide metabolism -1 34641 37088
YP_224240.1 NC_006953_p12 structural protein phrog_145 portal protein head and packaging 1 5333 6799
YP_224251.1 NC_006953_p23 hypothetical protein phrog_477 head-tail adaptor Ad1 connector 1 13153 13650
YP_224229.1 NC_006953_p1 hypothetical protein phrog_953 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2 625
YP_224257.1 NC_006953_p29 hypothetical protein phrog_18915 unknown function unknown function 1 16024 16428
YP_224248.1 NC_006953_p20 hypothetical protein singleton unknown function unknown function -1 11702 12130
YP_224265.1 NC_006953_p37 phage lysozyme phrog_7 endolysin lysis -1 26214 26672
YP_224269.1 NC_006953_p41 hypothetical protein phrog_824 unknown function unknown function -1 28476 28859
YP_224263.1 NC_006953_p35 hypothetical protein phrog_671 nucleotide pyrophosphohydrolase other -1 24648 25079
YP_224247.1 NC_006953_p19 hypothetical protein phrog_13935 unknown function unknown function 1 11073 11669