| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_007024 |
Definition |
Xanthomonas phage Xp15, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
55770 |
Host Name |
Xanthomonas campestris |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
84 |
%GC |
51.88 |
Number of singletons |
45 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_239339.1 | NC_007024_p71 | hypothetical protein | singleton | unknown function | unknown function | -1 | 51291 | 51518 |
| YP_239284.1 | NC_007024_p16 | possible phage minor tail protein | phrog_290 | minor tail protein | tail | 1 | 11435 | 12388 |
| YP_239304.1 | NC_007024_p36 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 30076 | 30897 |
| YP_239321.1 | NC_007024_p53 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45146 | 45418 |
| YP_239329.1 | NC_007024_p61 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47827 | 47958 |
| YP_239313.1 | NC_007024_p45 | exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 37637 | 38344 |
| YP_239349.1 | NC_007024_p81 | hypothetical protein | singleton | unknown function | unknown function | 1 | 54482 | 54601 |
| YP_239323.1 | NC_007024_p55 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45916 | 46320 |
| YP_239307.1 | NC_007024_p39 | cabamoyl transferase | phrog_1601 | Nol-like carbamoyltransferase | moron, auxiliary metabolic gene and host takeover | -1 | 31856 | 33499 |
| YP_239281.1 | NC_007024_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10336 | 10695 |
| YP_239282.1 | NC_007024_p14 | hypothetical protein phage protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 10692 | 11057 |
| YP_239318.1 | NC_007024_p50 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44222 | 44530 |
| YP_239296.1 | NC_007024_p28 | holin | phrog_26796 | holin | lysis | 1 | 25142 | 25471 |
| YP_239332.1 | NC_007024_p64 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49469 | 49726 |
| YP_239334.1 | NC_007024_p66 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49917 | 50147 |
| YP_239335.1 | NC_007024_p67 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50178 | 50372 |
| YP_239342.1 | NC_007024_p74 | hypothetical protein | singleton | unknown function | unknown function | -1 | 51840 | 52028 |
| YP_239315.1 | NC_007024_p47 | possible DNA binding protein | phrog_624 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 40268 | 40789 |
| YP_239326.1 | NC_007024_p58 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47159 | 47365 |
| YP_239302.1 | NC_007024_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29310 | 29501 |
| YP_239285.1 | NC_007024_p17 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | 1 | 12406 | 12795 |
| YP_239269.1 | NC_007024_p1 | hypothetical protein | singleton | unknown function | unknown function | -1 | 205 | 390 |
| YP_239305.1 | NC_007024_p37 | DNA polymerase subunit | phrog_761 | thymidylate kinase | other | -1 | 30897 | 31379 |
| YP_239328.1 | NC_007024_p60 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47811 | 47912 |
| YP_239303.1 | NC_007024_p35 | deoxycytidylate deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 29563 | 30045 |
| YP_239322.1 | NC_007024_p54 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45556 | 45891 |
| YP_239287.1 | NC_007024_p19 | possible phage tail protein | phrog_1716 | tail length tape measure protein | tail | 1 | 13138 | 16353 |
| YP_239294.1 | NC_007024_p26 | holin | singleton | unknown function | unknown function | 1 | 24616 | 25155 |
| YP_239336.1 | NC_007024_p68 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50372 | 50830 |
| YP_239351.1 | NC_007024_p83 | hypothetical protein | singleton | unknown function | unknown function | 1 | 54862 | 54981 |
| YP_239290.1 | NC_007024_p22 | phage minor tail protein | phrog_329 | minor tail protein | tail | 1 | 17185 | 17577 |
| YP_239319.1 | NC_007024_p51 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44527 | 44880 |
| YP_239316.1 | NC_007024_p48 | possible integrase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 40833 | 43253 |
| YP_239337.1 | NC_007024_p69 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50834 | 50968 |
| YP_239292.1 | NC_007024_p24 | possible host specificity factor | singleton | unknown function | unknown function | 1 | 21597 | 24218 |
| YP_239348.1 | NC_007024_p80 | hypothetical protein | phrog_2556 | unknown function | unknown function | 1 | 54066 | 54416 |
| YP_239298.1 | NC_007024_p30 | possible endodeoxyribonuclease | phrog_255 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 26379 | 26924 |
| YP_239300.1 | NC_007024_p32 | possible DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | -1 | 27160 | 28329 |
| YP_239346.1 | NC_007024_p78 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53280 | 53465 |
| YP_239340.1 | NC_007024_p72 | hypothetical protein | phrog_4767 | unknown function | unknown function | -1 | 51509 | 51715 |
| YP_239325.1 | NC_007024_p57 | possible peptide chain release factor | singleton | unknown function | unknown function | -1 | 46787 | 47134 |
| YP_239344.1 | NC_007024_p76 | hypothetical protein | singleton | unknown function | unknown function | -1 | 52326 | 52781 |
| YP_239333.1 | NC_007024_p65 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49660 | 49926 |
| YP_239345.1 | NC_007024_p77 | hypothetical protein | singleton | unknown function | unknown function | 1 | 52876 | 52956 |
| YP_239312.1 | NC_007024_p44 | hypothetical protein | singleton | unknown function | unknown function | -1 | 37386 | 37637 |
| YP_239272.1 | NC_007024_p4 | hypothetical protein | phrog_19495 | unknown function | unknown function | 1 | 2198 | 3781 |
| YP_239341.1 | NC_007024_p73 | hypothetical protein | singleton | unknown function | unknown function | -1 | 51712 | 51840 |
| YP_239317.1 | NC_007024_p49 | thymidylate synthase complementing protein | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 43426 | 44292 |
| YP_239299.1 | NC_007024_p31 | hypothetical protein | phrog_54 | DksA-like zinc-finger protein | other | -1 | 26927 | 27160 |
| YP_239288.1 | NC_007024_p20 | hypothetical protein phage protein | phrog_384 | virion structural protein | head and packaging | 1 | 16353 | 16724 |
| YP_239293.1 | NC_007024_p25 | endolysin | phrog_465 | endolysin | lysis | 1 | 24228 | 24695 |
| YP_239278.1 | NC_007024_p10 | phage structural protein | phrog_212 | major head protein | head and packaging | 1 | 8280 | 9272 |
| YP_239343.1 | NC_007024_p75 | hypothetical protein | singleton | unknown function | unknown function | -1 | 52021 | 52257 |
| YP_239280.1 | NC_007024_p12 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 9827 | 10339 |
| YP_239309.1 | NC_007024_p41 | hypothetical protein | phrog_13900 | minor head protein | head and packaging | -1 | 34522 | 34968 |
| YP_239338.1 | NC_007024_p70 | endoglucanase | singleton | unknown function | unknown function | -1 | 50968 | 51291 |
| YP_239286.1 | NC_007024_p18 | hypothetical protein | phrog_4966 | unknown function | unknown function | 1 | 12900 | 13157 |
| YP_239273.1 | NC_007024_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3778 | 4311 |
| YP_239320.1 | NC_007024_p52 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44877 | 45149 |
| YP_239274.1 | NC_007024_p6 | possible NADH dehydrogenase subunit | phrog_218 | head closure | connector | 1 | 4308 | 4676 |
| YP_239270.1 | NC_007024_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 466 | 771 |
| YP_239314.1 | NC_007024_p46 | possible DNA polymerase subunit | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 38356 | 40278 |
| YP_239350.1 | NC_007024_p82 | hypothetical protein | singleton | unknown function | unknown function | 1 | 54717 | 55226 |
| YP_239297.1 | NC_007024_p29 | holin | singleton | unknown function | unknown function | 1 | 25472 | 25918 |
| YP_239311.1 | NC_007024_p43 | hypothetical protein | phrog_1934 | unknown function | unknown function | -1 | 36899 | 37270 |
| YP_239271.1 | NC_007024_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1678 | 2097 |
| YP_239279.1 | NC_007024_p11 | possible phage tail fiber protein | singleton | unknown function | unknown function | 1 | 9343 | 9822 |
| YP_239306.1 | NC_007024_p38 | hypothetical protein | phrog_671 | nucleotide pyrophosphohydrolase | other | -1 | 31435 | 31854 |
| YP_239327.1 | NC_007024_p59 | probable NUDIX hydrolase | singleton | unknown function | unknown function | -1 | 47398 | 47811 |
| YP_239276.1 | NC_007024_p8 | phage structural protein | phrog_145 | portal protein | head and packaging | 1 | 6090 | 7448 |
| YP_239310.1 | NC_007024_p42 | possible DNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 35094 | 36857 |
| YP_239324.1 | NC_007024_p56 | possible translation initiation factor | singleton | unknown function | unknown function | -1 | 46317 | 46778 |
| YP_239308.1 | NC_007024_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33499 | 34329 |
| YP_239331.1 | NC_007024_p63 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49074 | 49448 |
| YP_239289.1 | NC_007024_p21 | hypothetical protein phage protein | phrog_396 | minor tail protein | tail | 1 | 16724 | 17185 |
| YP_239295.1 | NC_007024_p27 | holin | phrog_26796 | holin | lysis | 1 | 25139 | 25471 |
| YP_239301.1 | NC_007024_p33 | DNA dependent DNA polymerase | phrog_474 | phosphofructokinase | other | -1 | 28507 | 29313 |
| YP_239347.1 | NC_007024_p79 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53434 | 54072 |
| YP_239283.1 | NC_007024_p15 | possible peptidoglycan binding protein | phrog_179 | tail terminator | connector | 1 | 11054 | 11431 |
| YP_239352.1 | NC_007024_p84 | hypothetical protein | singleton | unknown function | unknown function | 1 | 55271 | 55393 |
| YP_239291.1 | NC_007024_p23 | possible phage tail protein | phrog_31 | central tail fiber J | tail | 1 | 17568 | 21587 |
| YP_239277.1 | NC_007024_p9 | phage structural protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 7452 | 8168 |
| YP_239275.1 | NC_007024_p7 | phage terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 4666 | 6087 |
| YP_239330.1 | NC_007024_p62 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48913 | 49077 |