| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_007045 |
Definition |
Staphylococcus phage PT1028, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA phages. |
DB of origin |
REFSEQ |
Length |
15603 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
22 |
%GC |
31.41 |
Number of singletons |
4 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_239446.1 | NC_007045_p8 | protein of an unannotated phage | phrog_1 | integrase | integration and excision | -1 | 5420 | 6634 |
| YP_239444.1 | NC_007045_p6 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 3325 | 3837 |
| YP_239452.1 | NC_007045_p14 | protein of an unannotated phage | phrog_695 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 9056 | 9925 |
| YP_239453.1 | NC_007045_p15 | protein of an unannotated phage | phrog_8841 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 9939 | 11648 |
| YP_239440.1 | NC_007045_p2 | protein of an unannotated phage | phrog_6810 | spore coat protein | head and packaging | 1 | 733 | 1260 |
| YP_239447.1 | NC_007045_p9 | protein of an unannotated phage | phrog_3 | transcriptional repressor | transcription regulation | -1 | 6933 | 7667 |
| YP_239448.1 | NC_007045_p10 | protein of an unannotated phage | phrog_3 | transcriptional repressor | transcription regulation | 1 | 7808 | 8029 |
| YP_239457.1 | NC_007045_p19 | protein of an unannotated phage | phrog_695 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 13017 | 13820 |
| YP_239454.1 | NC_007045_p16 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 10721 | 11017 |
| YP_239450.1 | NC_007045_p12 | protein of an unannotated phage | phrog_1796 | unknown function | unknown function | 1 | 8453 | 8662 |
| YP_239445.1 | NC_007045_p7 | protein of an unannotated phage | phrog_1412 | antitoxin mazE-like | moron, auxiliary metabolic gene and host takeover | -1 | 4599 | 5396 |
| YP_239451.1 | NC_007045_p13 | protein of an unannotated phage | phrog_11708 | unknown function | unknown function | 1 | 8665 | 8991 |
| YP_239439.1 | NC_007045_p1 | protein of an unannotated phage | phrog_13159 | unknown function | unknown function | 1 | 27 | 680 |
| YP_239455.1 | NC_007045_p17 | protein of an unannotated phage | phrog_7134 | unknown function | unknown function | 1 | 11960 | 12340 |
| YP_239442.1 | NC_007045_p4 | protein of an unannotated phage | phrog_51 | terminase small subunit | head and packaging | 1 | 1601 | 2170 |
| YP_239458.1 | NC_007045_p20 | protein of an unannotated phage | phrog_20734 | unknown function | unknown function | 1 | 13807 | 14079 |
| YP_239460.1 | NC_007045_p22 | protein of an unannotated phage | phrog_2113 | unknown function | unknown function | 1 | 15258 | 15599 |
| YP_239456.1 | NC_007045_p18 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 12337 | 12846 |
| YP_239459.1 | NC_007045_p21 | protein of an unannotated phage | phrog_8254 | unknown function | unknown function | 1 | 14081 | 14722 |
| YP_239449.1 | NC_007045_p11 | protein of an unannotated phage | phrog_534 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 8030 | 8302 |
| YP_239441.1 | NC_007045_p3 | protein of an unannotated phage | phrog_9005 | unknown function | unknown function | 1 | 1263 | 1604 |
| YP_239443.1 | NC_007045_p5 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 3025 | 3207 |