Genomic map of Staphylococcus phage PT1028 (NC_007045)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_007045
Definition
Staphylococcus phage PT1028, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA phages.
DB of origin
REFSEQ
Length
15603
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
22
%GC
31.41
Number of singletons
4
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_239446.1 NC_007045_p8 protein of an unannotated phage phrog_1 integrase integration and excision -1 5420 6634
YP_239444.1 NC_007045_p6 protein of an unannotated phage singleton unknown function unknown function 1 3325 3837
YP_239452.1 NC_007045_p14 protein of an unannotated phage phrog_695 DNA polymerase/primase DNA, RNA and nucleotide metabolism 1 9056 9925
YP_239453.1 NC_007045_p15 protein of an unannotated phage phrog_8841 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 9939 11648
YP_239440.1 NC_007045_p2 protein of an unannotated phage phrog_6810 spore coat protein head and packaging 1 733 1260
YP_239447.1 NC_007045_p9 protein of an unannotated phage phrog_3 transcriptional repressor transcription regulation -1 6933 7667
YP_239448.1 NC_007045_p10 protein of an unannotated phage phrog_3 transcriptional repressor transcription regulation 1 7808 8029
YP_239457.1 NC_007045_p19 protein of an unannotated phage phrog_695 DNA polymerase/primase DNA, RNA and nucleotide metabolism 1 13017 13820
YP_239454.1 NC_007045_p16 protein of an unannotated phage singleton unknown function unknown function -1 10721 11017
YP_239450.1 NC_007045_p12 protein of an unannotated phage phrog_1796 unknown function unknown function 1 8453 8662
YP_239445.1 NC_007045_p7 protein of an unannotated phage phrog_1412 antitoxin mazE-like moron, auxiliary metabolic gene and host takeover -1 4599 5396
YP_239451.1 NC_007045_p13 protein of an unannotated phage phrog_11708 unknown function unknown function 1 8665 8991
YP_239439.1 NC_007045_p1 protein of an unannotated phage phrog_13159 unknown function unknown function 1 27 680
YP_239455.1 NC_007045_p17 protein of an unannotated phage phrog_7134 unknown function unknown function 1 11960 12340
YP_239442.1 NC_007045_p4 protein of an unannotated phage phrog_51 terminase small subunit head and packaging 1 1601 2170
YP_239458.1 NC_007045_p20 protein of an unannotated phage phrog_20734 unknown function unknown function 1 13807 14079
YP_239460.1 NC_007045_p22 protein of an unannotated phage phrog_2113 unknown function unknown function 1 15258 15599
YP_239456.1 NC_007045_p18 protein of an unannotated phage singleton unknown function unknown function 1 12337 12846
YP_239459.1 NC_007045_p21 protein of an unannotated phage phrog_8254 unknown function unknown function 1 14081 14722
YP_239449.1 NC_007045_p11 protein of an unannotated phage phrog_534 DNA binding protein DNA, RNA and nucleotide metabolism 1 8030 8302
YP_239441.1 NC_007045_p3 protein of an unannotated phage phrog_9005 unknown function unknown function 1 1263 1604
YP_239443.1 NC_007045_p5 protein of an unannotated phage singleton unknown function unknown function 1 3025 3207