| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_007046 |
Definition |
Staphylococcus phage 66, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Rakietenvirinae; Rosenblumvirus; Staphylococcus virus 66. |
DB of origin |
REFSEQ |
Length |
18199 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
27 |
%GC |
29.28 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_239470.1 | NC_007046_p10 | hypothetical protein | phrog_17481 | minor tail protein | tail | 1 | 6629 | 7306 |
| YP_239486.1 | NC_007046_p26 | hypothetical protein | phrog_6274 | unknown function | unknown function | -1 | 17376 | 17678 |
| YP_239478.1 | NC_007046_p18 | DNA polymerase | phrog_1907 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 11848 | 14133 |
| YP_239482.1 | NC_007046_p22 | hypothetical protein | phrog_7529 | unknown function | unknown function | -1 | 16092 | 16505 |
| YP_239487.1 | NC_007046_p27 | hypothetical protein | phrog_10178 | unknown function | unknown function | -1 | 17671 | 17868 |
| YP_239467.1 | NC_007046_p7 | hypothetical protein | phrog_36917 | unknown function | unknown function | 1 | 3418 | 3537 |
| YP_239473.1 | NC_007046_p13 | hypothetical protein | phrog_199 | holin | lysis | 1 | 9897 | 10319 |
| YP_239466.1 | NC_007046_p6 | lower collar protein | phrog_3225 | adaptor Ad4 | connector | 1 | 3090 | 3845 |
| YP_239479.1 | NC_007046_p19 | encapsidation protein | phrog_2150 | terminase | head and packaging | -1 | 14149 | 15396 |
| YP_239463.1 | NC_007046_p3 | major capsid protein | phrog_2006 | major head protein | head and packaging | 1 | 873 | 2099 |
| YP_239471.1 | NC_007046_p11 | hypothetical protein | phrog_21844 | tail protein | tail | 1 | 7622 | 8074 |
| YP_239485.1 | NC_007046_p25 | hypothetical protein | phrog_6346 | unknown function | unknown function | -1 | 17125 | 17361 |
| YP_239469.1 | NC_007046_p9 | hypothetical protein | phrog_635 | endolysin | lysis | 1 | 5814 | 6566 |
| YP_239468.1 | NC_007046_p8 | hypothetical protein | phrog_287 | minor tail protein | tail | 1 | 3859 | 5802 |
| YP_239474.1 | NC_007046_p14 | hypothetical protein | phrog_5979 | unknown function | unknown function | 1 | 10270 | 11733 |
| YP_239465.1 | NC_007046_p5 | upper collar protein | phrog_2038 | upper collar connector | connector | 1 | 2114 | 3097 |
| YP_239462.1 | NC_007046_p2 | hypothetical protein | phrog_6289 | unknown function | unknown function | 1 | 684 | 866 |
| YP_239477.1 | NC_007046_p17 | hypothetical protein | phrog_36884 | unknown function | unknown function | -1 | 11525 | 11635 |
| YP_239480.1 | NC_007046_p20 | hypothetical protein | phrog_31132 | unknown function | unknown function | -1 | 15317 | 15463 |
| YP_239476.1 | NC_007046_p16 | hypothetical protein | phrog_32011 | unknown function | unknown function | 1 | 11246 | 11383 |
| YP_239472.1 | NC_007046_p12 | tail protein | phrog_2248 | tail protein | tail | 1 | 8132 | 9895 |
| YP_239464.1 | NC_007046_p4 | hypothetical protein | phrog_33174 | unknown function | unknown function | 1 | 1813 | 1953 |
| YP_239481.1 | NC_007046_p21 | hypothetical protein | phrog_6099 | unknown function | unknown function | -1 | 15444 | 15926 |
| YP_239461.1 | NC_007046_p1 | hypothetical protein | phrog_7102 | unknown function | unknown function | 1 | 281 | 670 |
| YP_239483.1 | NC_007046_p23 | hypothetical protein | phrog_7019 | unknown function | unknown function | -1 | 16508 | 16684 |
| YP_239475.1 | NC_007046_p15 | hypothetical protein | phrog_29240 | unknown function | unknown function | -1 | 10577 | 10741 |
| YP_239484.1 | NC_007046_p24 | hypothetical protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 16733 | 17101 |