| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_007047 |
Definition |
Staphylococcus phage 187, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus. |
DB of origin |
REFSEQ |
Length |
39620 |
Host Name |
Staphylococcus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
77 |
%GC |
34.25 |
Number of singletons |
9 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_239500.1 | NC_007047_p13 | protein of an unannotated phage | phrog_183 | tail chaperone protein | tail | 1 | 8550 | 8930 |
| YP_239556.1 | NC_007047_p69 | protein of an unannotated phage | phrog_1034 | unknown function | unknown function | 1 | 36739 | 37029 |
| YP_239532.1 | NC_007047_p45 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 28578 | 28760 |
| YP_239549.1 | NC_007047_p62 | protein of an unannotated phage | phrog_299 | unknown function | unknown function | 1 | 34724 | 34909 |
| YP_239531.1 | NC_007047_p44 | protein of an unannotated phage | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 27810 | 28562 |
| YP_239514.1 | NC_007047_p27 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 18418 | 18600 |
| YP_239550.1 | NC_007047_p63 | protein of an unannotated phage | phrog_3 | transcriptional repressor | transcription regulation | 1 | 34910 | 35167 |
| YP_239523.1 | NC_007047_p36 | protein of an unannotated phage | phrog_1914 | unknown function | unknown function | -1 | 24873 | 25547 |
| YP_239499.1 | NC_007047_p12 | protein of an unannotated phage | phrog_238 | major tail protein | tail | 1 | 7838 | 8491 |
| YP_239522.1 | NC_007047_p35 | protein of an unannotated phage | phrog_888 | unknown function | unknown function | -1 | 24120 | 24845 |
| YP_239497.1 | NC_007047_p10 | protein of an unannotated phage | phrog_5 | tail completion or Neck1 protein | connector | 1 | 7065 | 7412 |
| YP_239491.1 | NC_007047_p4 | protein of an unannotated phage | phrog_115 | minor head protein | head and packaging | 1 | 3259 | 4227 |
| YP_239489.1 | NC_007047_p2 | protein of an unannotated phage | phrog_2 | terminase large subunit | head and packaging | 1 | 478 | 1818 |
| YP_239537.1 | NC_007047_p50 | protein of an unannotated phage | phrog_13915 | unknown function | unknown function | -1 | 29313 | 29423 |
| YP_239501.1 | NC_007047_p14 | protein of an unannotated phage | phrog_441 | tail assembly chaperone | tail | 1 | 8960 | 9310 |
| YP_239508.1 | NC_007047_p21 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 14092 | 14241 |
| YP_239498.1 | NC_007047_p11 | protein of an unannotated phage | phrog_176 | tail terminator | connector | 1 | 7425 | 7820 |
| YP_239533.1 | NC_007047_p46 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 28728 | 28844 |
| YP_239552.1 | NC_007047_p65 | protein of an unannotated phage | phrog_258 | virulence associated | other | 1 | 35539 | 35781 |
| YP_239535.1 | NC_007047_p48 | protein of an unannotated phage | phrog_534 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 29017 | 29280 |
| YP_239544.1 | NC_007047_p57 | protein of an unannotated phage | phrog_1163 | unknown function | unknown function | 1 | 32332 | 33135 |
| YP_239558.1 | NC_007047_p71 | protein of an unannotated phage | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 37263 | 37796 |
| YP_239534.1 | NC_007047_p47 | protein of an unannotated phage | phrog_4298 | unknown function | unknown function | -1 | 28738 | 28953 |
| YP_239504.1 | NC_007047_p17 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 11311 | 11715 |
| YP_239557.1 | NC_007047_p70 | protein of an unannotated phage | phrog_266 | unknown function | unknown function | 1 | 37022 | 37270 |
| YP_239555.1 | NC_007047_p68 | protein of an unannotated phage | phrog_98 | unknown function | unknown function | 1 | 36376 | 36723 |
| YP_239545.1 | NC_007047_p58 | protein of an unannotated phage | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 33145 | 33918 |
| YP_239529.1 | NC_007047_p42 | protein of an unannotated phage | phrog_3240 | unknown function | unknown function | -1 | 27544 | 27753 |
| YP_239516.1 | NC_007047_p29 | protein of an unannotated phage | phrog_297 | holin | lysis | 1 | 20384 | 20638 |
| YP_239507.1 | NC_007047_p20 | protein of an unannotated phage | phrog_326 | tail protein with endopeptidase domain | other | 1 | 13391 | 14788 |
| YP_239536.1 | NC_007047_p49 | protein of an unannotated phage | phrog_369 | unknown function | unknown function | 1 | 29293 | 29454 |
| YP_239520.1 | NC_007047_p33 | protein of an unannotated phage | phrog_6988 | unknown function | unknown function | -1 | 23250 | 23657 |
| YP_239525.1 | NC_007047_p38 | protein of an unannotated phage | phrog_3 | transcriptional repressor | transcription regulation | 1 | 26159 | 26353 |
| YP_239512.1 | NC_007047_p25 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 17940 | 18062 |
| YP_239517.1 | NC_007047_p30 | protein of an unannotated phage | phrog_635 | endolysin | lysis | 1 | 20650 | 21405 |
| YP_239538.1 | NC_007047_p51 | protein of an unannotated phage | phrog_401 | unknown function | unknown function | 1 | 29546 | 29806 |
| YP_239541.1 | NC_007047_p54 | protein of an unannotated phage | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 31104 | 31655 |
| YP_239490.1 | NC_007047_p3 | protein of an unannotated phage | phrog_64 | portal protein | head and packaging | 1 | 1830 | 3275 |
| YP_239560.1 | NC_007047_p73 | protein of an unannotated phage | phrog_301 | secreted protein | other | 1 | 38036 | 38422 |
| YP_239554.1 | NC_007047_p67 | protein of an unannotated phage | phrog_2532 | unknown function | unknown function | 1 | 36185 | 36379 |
| YP_239562.1 | NC_007047_p75 | protein of an unannotated phage | phrog_2409 | unknown function | unknown function | 1 | 38593 | 38955 |
| YP_239524.1 | NC_007047_p37 | protein of an unannotated phage | phrog_8 | transcriptional regulator | transcription regulation | -1 | 25564 | 25896 |
| YP_239505.1 | NC_007047_p18 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 11530 | 11691 |
| YP_239561.1 | NC_007047_p74 | protein of an unannotated phage | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 38419 | 38592 |
| YP_239548.1 | NC_007047_p61 | protein of an unannotated phage | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 34315 | 34719 |
| YP_239511.1 | NC_007047_p24 | protein of an unannotated phage | phrog_6183 | minor tail protein | tail | 1 | 16556 | 17827 |
| YP_239488.1 | NC_007047_p1 | protein of an unannotated phage | phrog_51 | terminase small subunit | head and packaging | 1 | 117 | 557 |
| YP_239519.1 | NC_007047_p32 | protein of an unannotated phage | phrog_419 | unknown function | unknown function | 1 | 23056 | 23253 |
| YP_239547.1 | NC_007047_p60 | protein of an unannotated phage | phrog_433 | unknown function | unknown function | 1 | 34083 | 34304 |
| YP_239540.1 | NC_007047_p53 | protein of an unannotated phage | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 30300 | 31073 |
| YP_239526.1 | NC_007047_p39 | protein of an unannotated phage | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 26353 | 27120 |
| YP_239559.1 | NC_007047_p72 | protein of an unannotated phage | phrog_278 | transcriptional regulator | transcription regulation | 1 | 37833 | 38039 |
| YP_239506.1 | NC_007047_p19 | protein of an unannotated phage | phrog_33 | distal tail protein Dit | tail | 1 | 12446 | 13378 |
| YP_239492.1 | NC_007047_p5 | protein of an unannotated phage | phrog_172 | head scaffolding protein | head and packaging | 1 | 4329 | 4952 |
| YP_239521.1 | NC_007047_p34 | protein of an unannotated phage | phrog_7395 | unknown function | unknown function | -1 | 23651 | 24088 |
| YP_239553.1 | NC_007047_p66 | protein of an unannotated phage | phrog_467 | unknown function | unknown function | 1 | 35796 | 36188 |
| YP_239494.1 | NC_007047_p7 | protein of an unannotated phage | phrog_341 | major tail protein | tail | 1 | 5972 | 6421 |
| YP_239564.1 | NC_007047_p77 | protein of an unannotated phage | phrog_36 | transcriptional regulator | transcription regulation | 1 | 39126 | 39548 |
| YP_239518.1 | NC_007047_p31 | protein of an unannotated phage | phrog_1 | integrase | integration and excision | -1 | 21897 | 22943 |
| YP_239551.1 | NC_007047_p64 | protein of an unannotated phage | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 35179 | 35535 |
| YP_239563.1 | NC_007047_p76 | protein of an unannotated phage | phrog_1367 | unknown function | unknown function | 1 | 38956 | 39102 |
| YP_239542.1 | NC_007047_p55 | protein of an unannotated phage | phrog_20102 | unknown function | unknown function | 1 | 31444 | 31647 |
| YP_239527.1 | NC_007047_p40 | protein of an unannotated phage | phrog_1796 | unknown function | unknown function | 1 | 27121 | 27345 |
| YP_239495.1 | NC_007047_p8 | protein of an unannotated phage | phrog_132 | head-tail adaptor | connector | 1 | 6378 | 6764 |
| YP_239502.1 | NC_007047_p15 | protein of an unannotated phage | phrog_58 | tail length tape measure protein | tail | 1 | 9326 | 12433 |
| YP_239510.1 | NC_007047_p23 | protein of an unannotated phage | phrog_5240 | tail fiber protein | tail | 1 | 15496 | 16539 |
| YP_239513.1 | NC_007047_p26 | protein of an unannotated phage | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 18348 | 20234 |
| YP_239509.1 | NC_007047_p22 | protein of an unannotated phage | phrog_8437 | unknown function | unknown function | 1 | 14792 | 15484 |
| YP_239543.1 | NC_007047_p56 | protein of an unannotated phage | phrog_398 | unknown function | unknown function | 1 | 31668 | 32360 |
| YP_239528.1 | NC_007047_p41 | protein of an unannotated phage | phrog_1534 | unknown function | unknown function | 1 | 27385 | 27555 |
| YP_239530.1 | NC_007047_p43 | protein of an unannotated phage | phrog_38378 | unknown function | unknown function | 1 | 27574 | 27705 |
| YP_239503.1 | NC_007047_p16 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 10957 | 11514 |
| YP_239546.1 | NC_007047_p59 | protein of an unannotated phage | phrog_809 | transcriptional regulator | transcription regulation | 1 | 33912 | 34070 |
| YP_239515.1 | NC_007047_p28 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 19148 | 19351 |
| YP_239496.1 | NC_007047_p9 | protein of an unannotated phage | phrog_348 | minor head protein | head and packaging | 1 | 6761 | 7075 |
| YP_239539.1 | NC_007047_p52 | protein of an unannotated phage | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 29821 | 30300 |
| YP_239493.1 | NC_007047_p6 | protein of an unannotated phage | phrog_544 | major head protein | head and packaging | 1 | 4971 | 5882 |