| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_007052 |
Definition |
Staphylococcus phage 42e, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Triavirus. |
DB of origin |
REFSEQ |
Length |
45861 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
79 |
%GC |
33.73 |
Number of singletons |
6 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_239875.1 | NC_007052_p21 | protein of an unannotated phage | phrog_326 | tail protein with endopeptidase domain | other | 1 | 15571 | 17154 |
| YP_239915.1 | NC_007052_p61 | protein of an unannotated phage | phrog_3 | transcriptional repressor | transcription regulation | 1 | 39385 | 39654 |
| YP_239923.1 | NC_007052_p69 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 41798 | 41899 |
| YP_239884.1 | NC_007052_p30 | protein of an unannotated phage | phrog_635 | endolysin | lysis | 1 | 22524 | 23279 |
| YP_239892.1 | NC_007052_p38 | protein of an unannotated phage | phrog_5881 | unknown function | unknown function | -1 | 28789 | 29214 |
| YP_239864.1 | NC_007052_p10 | protein of an unannotated phage | phrog_5 | tail completion or Neck1 protein | connector | 1 | 5896 | 6297 |
| YP_239922.1 | NC_007052_p68 | protein of an unannotated phage | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 41621 | 41773 |
| YP_239931.1 | NC_007052_p77 | protein of an unannotated phage | phrog_34296 | unknown function | unknown function | 1 | 44657 | 44761 |
| YP_239918.1 | NC_007052_p64 | protein of an unannotated phage | phrog_266 | unknown function | unknown function | 1 | 40275 | 40526 |
| YP_239911.1 | NC_007052_p57 | protein of an unannotated phage | phrog_3161 | unknown function | unknown function | 1 | 38339 | 38554 |
| YP_239856.1 | NC_007052_p2 | protein of an unannotated phage | phrog_9 | terminase large subunit | head and packaging | 1 | 342 | 2033 |
| YP_239877.1 | NC_007052_p23 | protein of an unannotated phage | phrog_287 | minor tail protein | tail | 1 | 17460 | 19370 |
| YP_239865.1 | NC_007052_p11 | protein of an unannotated phage | phrog_78 | tail terminator | connector | 1 | 6298 | 6693 |
| YP_239867.1 | NC_007052_p13 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 7227 | 7427 |
| YP_239857.1 | NC_007052_p3 | protein of an unannotated phage | phrog_12 | portal protein | head and packaging | 1 | 2047 | 3276 |
| YP_239863.1 | NC_007052_p9 | protein of an unannotated phage | phrog_25 | head closure Hc1 | connector | 1 | 5567 | 5899 |
| YP_239886.1 | NC_007052_p32 | protein of an unannotated phage | phrog_20463 | unknown function | unknown function | -1 | 24767 | 24868 |
| YP_239860.1 | NC_007052_p6 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 5156 | 5266 |
| YP_239859.1 | NC_007052_p5 | protein of an unannotated phage | phrog_10 | major head protein | head and packaging | 1 | 4045 | 5208 |
| YP_239901.1 | NC_007052_p47 | protein of an unannotated phage | phrog_369 | unknown function | unknown function | 1 | 33233 | 33394 |
| YP_239882.1 | NC_007052_p28 | protein of an unannotated phage | phrog_3488 | holin | lysis | 1 | 21922 | 22056 |
| YP_239874.1 | NC_007052_p20 | protein of an unannotated phage | phrog_33 | distal tail protein Dit | tail | 1 | 14738 | 15562 |
| YP_239927.1 | NC_007052_p73 | protein of an unannotated phage | phrog_38774 | unknown function | unknown function | -1 | 42913 | 43035 |
| YP_239869.1 | NC_007052_p15 | protein of an unannotated phage | phrog_187 | head-tail adaptor | connector | 1 | 7974 | 8324 |
| YP_239907.1 | NC_007052_p53 | protein of an unannotated phage | phrog_398 | unknown function | unknown function | 1 | 35326 | 36000 |
| YP_239908.1 | NC_007052_p54 | protein of an unannotated phage | phrog_6493 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 35993 | 36748 |
| YP_239876.1 | NC_007052_p22 | protein of an unannotated phage | phrog_574 | unknown function | unknown function | 1 | 17154 | 17444 |
| YP_239917.1 | NC_007052_p63 | protein of an unannotated phage | phrog_258 | virulence associated | other | 1 | 40015 | 40263 |
| YP_239905.1 | NC_007052_p51 | protein of an unannotated phage | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 34249 | 34887 |
| YP_239889.1 | NC_007052_p35 | protein of an unannotated phage | phrog_9582 | dehydrogenase | other | -1 | 25883 | 26860 |
| YP_239921.1 | NC_007052_p67 | protein of an unannotated phage | phrog_301 | secreted protein | other | 1 | 41268 | 41624 |
| YP_239916.1 | NC_007052_p62 | protein of an unannotated phage | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 39655 | 40014 |
| YP_239883.1 | NC_007052_p29 | protein of an unannotated phage | phrog_297 | holin | lysis | 1 | 22258 | 22512 |
| YP_239891.1 | NC_007052_p37 | protein of an unannotated phage | phrog_21734 | unknown function | unknown function | -1 | 28302 | 28799 |
| YP_239913.1 | NC_007052_p59 | protein of an unannotated phage | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 38790 | 39194 |
| YP_239900.1 | NC_007052_p46 | protein of an unannotated phage | phrog_989 | unknown function | unknown function | 1 | 33019 | 33240 |
| YP_239929.1 | NC_007052_p75 | protein of an unannotated phage | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43230 | 43520 |
| YP_239925.1 | NC_007052_p71 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 42093 | 42656 |
| YP_239885.1 | NC_007052_p31 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 23467 | 24561 |
| YP_239871.1 | NC_007052_p17 | protein of an unannotated phage | phrog_167 | tail length tape measure protein | tail | 1 | 8538 | 14738 |
| YP_239919.1 | NC_007052_p65 | protein of an unannotated phage | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 40501 | 41028 |
| YP_239932.1 | NC_007052_p78 | protein of an unannotated phage | phrog_36 | transcriptional regulator | transcription regulation | 1 | 44881 | 45318 |
| YP_239888.1 | NC_007052_p34 | protein of an unannotated phage | phrog_7090 | unknown function | unknown function | 1 | 25287 | 25670 |
| YP_239866.1 | NC_007052_p12 | protein of an unannotated phage | phrog_88 | major tail protein | tail | 1 | 6728 | 7369 |
| YP_239855.1 | NC_007052_p1 | protein of an unannotated phage | phrog_361 | terminase small subunit | head and packaging | 1 | 47 | 352 |
| YP_239868.1 | NC_007052_p14 | protein of an unannotated phage | phrog_341 | major tail protein | tail | 1 | 7461 | 7916 |
| YP_239890.1 | NC_007052_p36 | protein of an unannotated phage | phrog_1 | integrase | integration and excision | -1 | 27198 | 28235 |
| YP_239862.1 | NC_007052_p8 | protein of an unannotated phage | phrog_30565 | unknown function | unknown function | 1 | 5395 | 5532 |
| YP_239928.1 | NC_007052_p74 | protein of an unannotated phage | phrog_19637 | unknown function | unknown function | -1 | 42992 | 43096 |
| YP_239894.1 | NC_007052_p40 | protein of an unannotated phage | phrog_4 | transcriptional repressor | transcription regulation | -1 | 29939 | 30658 |
| YP_239926.1 | NC_007052_p72 | protein of an unannotated phage | phrog_22020 | unknown function | unknown function | 1 | 42635 | 42889 |
| YP_239899.1 | NC_007052_p45 | protein of an unannotated phage | phrog_2305 | unknown function | unknown function | 1 | 32556 | 33005 |
| YP_239910.1 | NC_007052_p56 | protein of an unannotated phage | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 37101 | 38342 |
| YP_239881.1 | NC_007052_p27 | protein of an unannotated phage | phrog_276 | unknown function | unknown function | 1 | 21428 | 21727 |
| YP_239902.1 | NC_007052_p48 | protein of an unannotated phage | phrog_13915 | unknown function | unknown function | -1 | 33253 | 33363 |
| YP_239924.1 | NC_007052_p70 | protein of an unannotated phage | phrog_386 | unknown function | unknown function | 1 | 41841 | 42041 |
| YP_239903.1 | NC_007052_p49 | protein of an unannotated phage | phrog_401 | unknown function | unknown function | 1 | 33496 | 33756 |
| YP_239912.1 | NC_007052_p58 | protein of an unannotated phage | phrog_433 | unknown function | unknown function | 1 | 38558 | 38779 |
| YP_239898.1 | NC_007052_p44 | protein of an unannotated phage | phrog_1796 | unknown function | unknown function | 1 | 32290 | 32514 |
| YP_239920.1 | NC_007052_p66 | protein of an unannotated phage | phrog_278 | transcriptional regulator | transcription regulation | 1 | 41065 | 41271 |
| YP_239909.1 | NC_007052_p55 | protein of an unannotated phage | phrog_2289 | helicase loader | DNA, RNA and nucleotide metabolism | 1 | 36748 | 37104 |
| YP_239858.1 | NC_007052_p4 | protein of an unannotated phage | phrog_94 | head maturation protease | head and packaging | 1 | 3260 | 4033 |
| YP_239872.1 | NC_007052_p18 | protein of an unannotated phage | phrog_24504 | transcriptional regulator | transcription regulation | -1 | 12422 | 12928 |
| YP_239887.1 | NC_007052_p33 | protein of an unannotated phage | phrog_7919 | unknown function | unknown function | 1 | 24989 | 25300 |
| YP_239870.1 | NC_007052_p16 | protein of an unannotated phage | phrog_567 | unknown function | unknown function | 1 | 8366 | 8524 |
| YP_239906.1 | NC_007052_p52 | protein of an unannotated phage | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 34887 | 35312 |
| YP_239914.1 | NC_007052_p60 | protein of an unannotated phage | phrog_299 | unknown function | unknown function | 1 | 39199 | 39384 |
| YP_239873.1 | NC_007052_p19 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 13576 | 13719 |
| YP_239861.1 | NC_007052_p7 | protein of an unannotated phage | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 5277 | 5555 |
| YP_239880.1 | NC_007052_p26 | protein of an unannotated phage | phrog_134 | unknown function | unknown function | 1 | 21218 | 21382 |
| YP_239896.1 | NC_007052_p42 | protein of an unannotated phage | phrog_21676 | unknown function | unknown function | 1 | 31033 | 31341 |
| YP_239895.1 | NC_007052_p41 | protein of an unannotated phage | phrog_3 | transcriptional repressor | transcription regulation | 1 | 30800 | 31018 |
| YP_239879.1 | NC_007052_p25 | protein of an unannotated phage | phrog_300 | tail fiber protein | tail | 1 | 20836 | 21225 |
| YP_239893.1 | NC_007052_p39 | protein of an unannotated phage | phrog_5366 | unknown function | unknown function | -1 | 29299 | 29883 |
| YP_239933.1 | NC_007052_p79 | protein of an unannotated phage | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 45475 | 45789 |
| YP_239904.1 | NC_007052_p50 | protein of an unannotated phage | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 33770 | 34249 |
| YP_239897.1 | NC_007052_p43 | protein of an unannotated phage | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 31498 | 32289 |
| YP_239878.1 | NC_007052_p24 | protein of an unannotated phage | phrog_257 | minor tail protein | tail | 1 | 19370 | 20836 |
| YP_239930.1 | NC_007052_p76 | protein of an unannotated phage | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 43501 | 44868 |