Genomic map of Staphylococcus virus 42e (NC_007052)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_007052
Definition
Staphylococcus phage 42e, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Triavirus.
DB of origin
REFSEQ
Length
45861
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
79
%GC
33.73
Number of singletons
6
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_239875.1 NC_007052_p21 protein of an unannotated phage phrog_326 tail protein with endopeptidase domain other 1 15571 17154
YP_239915.1 NC_007052_p61 protein of an unannotated phage phrog_3 transcriptional repressor transcription regulation 1 39385 39654
YP_239923.1 NC_007052_p69 protein of an unannotated phage singleton unknown function unknown function -1 41798 41899
YP_239884.1 NC_007052_p30 protein of an unannotated phage phrog_635 endolysin lysis 1 22524 23279
YP_239892.1 NC_007052_p38 protein of an unannotated phage phrog_5881 unknown function unknown function -1 28789 29214
YP_239864.1 NC_007052_p10 protein of an unannotated phage phrog_5 tail completion or Neck1 protein connector 1 5896 6297
YP_239922.1 NC_007052_p68 protein of an unannotated phage phrog_152 RinB-like transcriptional activator transcription regulation 1 41621 41773
YP_239931.1 NC_007052_p77 protein of an unannotated phage phrog_34296 unknown function unknown function 1 44657 44761
YP_239918.1 NC_007052_p64 protein of an unannotated phage phrog_266 unknown function unknown function 1 40275 40526
YP_239911.1 NC_007052_p57 protein of an unannotated phage phrog_3161 unknown function unknown function 1 38339 38554
YP_239856.1 NC_007052_p2 protein of an unannotated phage phrog_9 terminase large subunit head and packaging 1 342 2033
YP_239877.1 NC_007052_p23 protein of an unannotated phage phrog_287 minor tail protein tail 1 17460 19370
YP_239865.1 NC_007052_p11 protein of an unannotated phage phrog_78 tail terminator connector 1 6298 6693
YP_239867.1 NC_007052_p13 protein of an unannotated phage singleton unknown function unknown function 1 7227 7427
YP_239857.1 NC_007052_p3 protein of an unannotated phage phrog_12 portal protein head and packaging 1 2047 3276
YP_239863.1 NC_007052_p9 protein of an unannotated phage phrog_25 head closure Hc1 connector 1 5567 5899
YP_239886.1 NC_007052_p32 protein of an unannotated phage phrog_20463 unknown function unknown function -1 24767 24868
YP_239860.1 NC_007052_p6 protein of an unannotated phage singleton unknown function unknown function 1 5156 5266
YP_239859.1 NC_007052_p5 protein of an unannotated phage phrog_10 major head protein head and packaging 1 4045 5208
YP_239901.1 NC_007052_p47 protein of an unannotated phage phrog_369 unknown function unknown function 1 33233 33394
YP_239882.1 NC_007052_p28 protein of an unannotated phage phrog_3488 holin lysis 1 21922 22056
YP_239874.1 NC_007052_p20 protein of an unannotated phage phrog_33 distal tail protein Dit tail 1 14738 15562
YP_239927.1 NC_007052_p73 protein of an unannotated phage phrog_38774 unknown function unknown function -1 42913 43035
YP_239869.1 NC_007052_p15 protein of an unannotated phage phrog_187 head-tail adaptor connector 1 7974 8324
YP_239907.1 NC_007052_p53 protein of an unannotated phage phrog_398 unknown function unknown function 1 35326 36000
YP_239908.1 NC_007052_p54 protein of an unannotated phage phrog_6493 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 35993 36748
YP_239876.1 NC_007052_p22 protein of an unannotated phage phrog_574 unknown function unknown function 1 17154 17444
YP_239917.1 NC_007052_p63 protein of an unannotated phage phrog_258 virulence associated other 1 40015 40263
YP_239905.1 NC_007052_p51 protein of an unannotated phage phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 34249 34887
YP_239889.1 NC_007052_p35 protein of an unannotated phage phrog_9582 dehydrogenase other -1 25883 26860
YP_239921.1 NC_007052_p67 protein of an unannotated phage phrog_301 secreted protein other 1 41268 41624
YP_239916.1 NC_007052_p62 protein of an unannotated phage phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 39655 40014
YP_239883.1 NC_007052_p29 protein of an unannotated phage phrog_297 holin lysis 1 22258 22512
YP_239891.1 NC_007052_p37 protein of an unannotated phage phrog_21734 unknown function unknown function -1 28302 28799
YP_239913.1 NC_007052_p59 protein of an unannotated phage phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 38790 39194
YP_239900.1 NC_007052_p46 protein of an unannotated phage phrog_989 unknown function unknown function 1 33019 33240
YP_239929.1 NC_007052_p75 protein of an unannotated phage phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 43230 43520
YP_239925.1 NC_007052_p71 protein of an unannotated phage singleton unknown function unknown function 1 42093 42656
YP_239885.1 NC_007052_p31 protein of an unannotated phage singleton unknown function unknown function 1 23467 24561
YP_239871.1 NC_007052_p17 protein of an unannotated phage phrog_167 tail length tape measure protein tail 1 8538 14738
YP_239919.1 NC_007052_p65 protein of an unannotated phage phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 40501 41028
YP_239932.1 NC_007052_p78 protein of an unannotated phage phrog_36 transcriptional regulator transcription regulation 1 44881 45318
YP_239888.1 NC_007052_p34 protein of an unannotated phage phrog_7090 unknown function unknown function 1 25287 25670
YP_239866.1 NC_007052_p12 protein of an unannotated phage phrog_88 major tail protein tail 1 6728 7369
YP_239855.1 NC_007052_p1 protein of an unannotated phage phrog_361 terminase small subunit head and packaging 1 47 352
YP_239868.1 NC_007052_p14 protein of an unannotated phage phrog_341 major tail protein tail 1 7461 7916
YP_239890.1 NC_007052_p36 protein of an unannotated phage phrog_1 integrase integration and excision -1 27198 28235
YP_239862.1 NC_007052_p8 protein of an unannotated phage phrog_30565 unknown function unknown function 1 5395 5532
YP_239928.1 NC_007052_p74 protein of an unannotated phage phrog_19637 unknown function unknown function -1 42992 43096
YP_239894.1 NC_007052_p40 protein of an unannotated phage phrog_4 transcriptional repressor transcription regulation -1 29939 30658
YP_239926.1 NC_007052_p72 protein of an unannotated phage phrog_22020 unknown function unknown function 1 42635 42889
YP_239899.1 NC_007052_p45 protein of an unannotated phage phrog_2305 unknown function unknown function 1 32556 33005
YP_239910.1 NC_007052_p56 protein of an unannotated phage phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 37101 38342
YP_239881.1 NC_007052_p27 protein of an unannotated phage phrog_276 unknown function unknown function 1 21428 21727
YP_239902.1 NC_007052_p48 protein of an unannotated phage phrog_13915 unknown function unknown function -1 33253 33363
YP_239924.1 NC_007052_p70 protein of an unannotated phage phrog_386 unknown function unknown function 1 41841 42041
YP_239903.1 NC_007052_p49 protein of an unannotated phage phrog_401 unknown function unknown function 1 33496 33756
YP_239912.1 NC_007052_p58 protein of an unannotated phage phrog_433 unknown function unknown function 1 38558 38779
YP_239898.1 NC_007052_p44 protein of an unannotated phage phrog_1796 unknown function unknown function 1 32290 32514
YP_239920.1 NC_007052_p66 protein of an unannotated phage phrog_278 transcriptional regulator transcription regulation 1 41065 41271
YP_239909.1 NC_007052_p55 protein of an unannotated phage phrog_2289 helicase loader DNA, RNA and nucleotide metabolism 1 36748 37104
YP_239858.1 NC_007052_p4 protein of an unannotated phage phrog_94 head maturation protease head and packaging 1 3260 4033
YP_239872.1 NC_007052_p18 protein of an unannotated phage phrog_24504 transcriptional regulator transcription regulation -1 12422 12928
YP_239887.1 NC_007052_p33 protein of an unannotated phage phrog_7919 unknown function unknown function 1 24989 25300
YP_239870.1 NC_007052_p16 protein of an unannotated phage phrog_567 unknown function unknown function 1 8366 8524
YP_239906.1 NC_007052_p52 protein of an unannotated phage phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 34887 35312
YP_239914.1 NC_007052_p60 protein of an unannotated phage phrog_299 unknown function unknown function 1 39199 39384
YP_239873.1 NC_007052_p19 protein of an unannotated phage singleton unknown function unknown function 1 13576 13719
YP_239861.1 NC_007052_p7 protein of an unannotated phage phrog_40 head-tail adaptor Ad1 connector 1 5277 5555
YP_239880.1 NC_007052_p26 protein of an unannotated phage phrog_134 unknown function unknown function 1 21218 21382
YP_239896.1 NC_007052_p42 protein of an unannotated phage phrog_21676 unknown function unknown function 1 31033 31341
YP_239895.1 NC_007052_p41 protein of an unannotated phage phrog_3 transcriptional repressor transcription regulation 1 30800 31018
YP_239879.1 NC_007052_p25 protein of an unannotated phage phrog_300 tail fiber protein tail 1 20836 21225
YP_239893.1 NC_007052_p39 protein of an unannotated phage phrog_5366 unknown function unknown function -1 29299 29883
YP_239933.1 NC_007052_p79 protein of an unannotated phage phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 45475 45789
YP_239904.1 NC_007052_p50 protein of an unannotated phage phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 33770 34249
YP_239897.1 NC_007052_p43 protein of an unannotated phage phrog_130 anti-repressor Ant transcription regulation 1 31498 32289
YP_239878.1 NC_007052_p24 protein of an unannotated phage phrog_257 minor tail protein tail 1 19370 20836
YP_239930.1 NC_007052_p76 protein of an unannotated phage phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 43501 44868