| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_007058 |
Definition |
Staphylococcus phage ROSA, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; unclassified Phietavirus. |
DB of origin |
REFSEQ |
Length |
43155 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
74 |
%GC |
35.05 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_240343.1 | NC_007058_p38 | protein of an unannotated phage | phrog_8835 | unknown function | unknown function | -1 | 30326 | 30571 |
| YP_240340.1 | NC_007058_p35 | protein of an unannotated phage | phrog_8 | transcriptional regulator | transcription regulation | -1 | 29422 | 29745 |
| YP_240322.1 | NC_007058_p17 | protein of an unannotated phage | phrog_33 | distal tail protein Dit | tail | 1 | 13083 | 14024 |
| YP_240317.1 | NC_007058_p12 | protein of an unannotated phage | phrog_176 | tail terminator | connector | 1 | 8036 | 8461 |
| YP_240319.1 | NC_007058_p14 | protein of an unannotated phage | phrog_183 | tail chaperone protein | tail | 1 | 9086 | 9592 |
| YP_240336.1 | NC_007058_p31 | protein of an unannotated phage | phrog_2033 | excisionase | integration and excision | 1 | 28131 | 28310 |
| YP_240323.1 | NC_007058_p18 | protein of an unannotated phage | phrog_663 | minor head protein | head and packaging | 1 | 14035 | 15921 |
| YP_240358.1 | NC_007058_p53 | protein of an unannotated phage | phrog_2232 | unknown function | unknown function | -1 | 34814 | 35671 |
| YP_240363.1 | NC_007058_p58 | protein of an unannotated phage | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 37691 | 38098 |
| YP_240375.1 | NC_007058_p70 | protein of an unannotated phage | phrog_301 | secreted protein | other | 1 | 41457 | 41843 |
| YP_240337.1 | NC_007058_p32 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 28325 | 28432 |
| YP_240328.1 | NC_007058_p23 | protein of an unannotated phage | phrog_276 | unknown function | unknown function | 1 | 20250 | 20549 |
| YP_240356.1 | NC_007058_p51 | protein of an unannotated phage | phrog_398 | unknown function | unknown function | 1 | 34217 | 34708 |
| YP_240372.1 | NC_007058_p67 | protein of an unannotated phage | phrog_1235 | unknown function | unknown function | 1 | 40447 | 40617 |
| YP_240362.1 | NC_007058_p57 | protein of an unannotated phage | phrog_433 | unknown function | unknown function | 1 | 37460 | 37681 |
| YP_240369.1 | NC_007058_p64 | protein of an unannotated phage | phrog_98 | unknown function | unknown function | 1 | 39561 | 39908 |
| YP_240379.1 | NC_007058_p74 | protein of an unannotated phage | phrog_36 | transcriptional regulator | transcription regulation | 1 | 42550 | 42972 |
| YP_240355.1 | NC_007058_p50 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 34036 | 34224 |
| YP_240325.1 | NC_007058_p20 | protein of an unannotated phage | phrog_257 | minor tail protein | tail | 1 | 17832 | 19655 |
| YP_240335.1 | NC_007058_p30 | protein of an unannotated phage | phrog_1 | integrase | integration and excision | -1 | 26815 | 28020 |
| YP_240349.1 | NC_007058_p44 | protein of an unannotated phage | phrog_401 | unknown function | unknown function | 1 | 32171 | 32431 |
| YP_240352.1 | NC_007058_p47 | protein of an unannotated phage | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 33472 | 34023 |
| YP_240334.1 | NC_007058_p29 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 25630 | 25743 |
| YP_240306.1 | NC_007058_p1 | protein of an unannotated phage | phrog_2538 | terminase small subunit | head and packaging | 1 | 140 | 520 |
| YP_240364.1 | NC_007058_p59 | protein of an unannotated phage | phrog_299 | unknown function | unknown function | 1 | 38098 | 38283 |
| YP_240314.1 | NC_007058_p9 | protein of an unannotated phage | phrog_25 | head closure Hc1 | connector | 1 | 6318 | 6653 |
| YP_240342.1 | NC_007058_p37 | protein of an unannotated phage | phrog_6431 | unknown function | unknown function | 1 | 30172 | 30333 |
| YP_240326.1 | NC_007058_p21 | protein of an unannotated phage | phrog_300 | tail fiber protein | tail | 1 | 19655 | 20032 |
| YP_240311.1 | NC_007058_p6 | protein of an unannotated phage | phrog_544 | major head protein | head and packaging | 1 | 4844 | 5668 |
| YP_240376.1 | NC_007058_p71 | protein of an unannotated phage | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 41840 | 42013 |
| YP_240329.1 | NC_007058_p24 | protein of an unannotated phage | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 20686 | 22560 |
| YP_240370.1 | NC_007058_p65 | protein of an unannotated phage | phrog_1034 | unknown function | unknown function | 1 | 39905 | 40213 |
| YP_240333.1 | NC_007058_p28 | protein of an unannotated phage | phrog_489 | endolysin | lysis | 1 | 24516 | 25970 |
| YP_240354.1 | NC_007058_p49 | protein of an unannotated phage | phrog_20102 | unknown function | unknown function | 1 | 33812 | 34015 |
| YP_240344.1 | NC_007058_p39 | protein of an unannotated phage | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 30627 | 31379 |
| YP_240324.1 | NC_007058_p19 | protein of an unannotated phage | phrog_287 | minor tail protein | tail | 1 | 15934 | 17832 |
| YP_240310.1 | NC_007058_p5 | protein of an unannotated phage | phrog_194 | head scaffolding protein | head and packaging | 1 | 4223 | 4822 |
| YP_240338.1 | NC_007058_p33 | protein of an unannotated phage | phrog_5375 | unknown function | unknown function | -1 | 28436 | 28927 |
| YP_240350.1 | NC_007058_p45 | protein of an unannotated phage | phrog_946 | unknown function | unknown function | 1 | 32441 | 32662 |
| YP_240309.1 | NC_007058_p4 | protein of an unannotated phage | phrog_115 | minor head protein | head and packaging | 1 | 3151 | 4110 |
| YP_240345.1 | NC_007058_p40 | protein of an unannotated phage | phrog_4309 | unknown function | unknown function | 1 | 31395 | 31613 |
| YP_240313.1 | NC_007058_p8 | protein of an unannotated phage | phrog_1161 | head-tail adaptor | connector | 1 | 6011 | 6325 |
| YP_240320.1 | NC_007058_p15 | protein of an unannotated phage | phrog_12040 | unknown function | unknown function | 1 | 9772 | 9921 |
| YP_240367.1 | NC_007058_p62 | protein of an unannotated phage | phrog_258 | virulence associated | other | 1 | 38897 | 39145 |
| YP_240316.1 | NC_007058_p11 | protein of an unannotated phage | phrog_374 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 6991 | 7650 |
| YP_240374.1 | NC_007058_p69 | protein of an unannotated phage | phrog_2334 | transcriptional regulator | transcription regulation | 1 | 41177 | 41464 |
| YP_240378.1 | NC_007058_p73 | protein of an unannotated phage | phrog_1367 | unknown function | unknown function | 1 | 42380 | 42526 |
| YP_240361.1 | NC_007058_p56 | protein of an unannotated phage | phrog_809 | transcriptional regulator | transcription regulation | 1 | 37289 | 37447 |
| YP_240353.1 | NC_007058_p48 | protein of an unannotated phage | phrog_36124 | unknown function | unknown function | -1 | 33535 | 33654 |
| YP_240368.1 | NC_007058_p63 | protein of an unannotated phage | phrog_467 | unknown function | unknown function | 1 | 39160 | 39564 |
| YP_240321.1 | NC_007058_p16 | protein of an unannotated phage | phrog_58 | tail length tape measure protein | tail | 1 | 9925 | 13068 |
| YP_240348.1 | NC_007058_p43 | protein of an unannotated phage | phrog_13915 | unknown function | unknown function | -1 | 31938 | 32048 |
| YP_240359.1 | NC_007058_p54 | protein of an unannotated phage | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 35736 | 36506 |
| YP_240357.1 | NC_007058_p52 | protein of an unannotated phage | phrog_10049 | unknown function | unknown function | 1 | 34705 | 34821 |
| YP_240346.1 | NC_007058_p41 | protein of an unannotated phage | phrog_534 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 31643 | 31906 |
| YP_240318.1 | NC_007058_p13 | protein of an unannotated phage | phrog_238 | major tail protein | tail | 1 | 8462 | 9019 |
| YP_240307.1 | NC_007058_p2 | protein of an unannotated phage | phrog_2 | terminase large subunit | head and packaging | 1 | 504 | 1769 |
| YP_240351.1 | NC_007058_p46 | protein of an unannotated phage | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 32655 | 33443 |
| YP_240339.1 | NC_007058_p34 | protein of an unannotated phage | phrog_87 | metallo-protease | other | -1 | 28948 | 29409 |
| YP_240341.1 | NC_007058_p36 | protein of an unannotated phage | phrog_3 | transcriptional repressor | transcription regulation | 1 | 29909 | 30157 |
| YP_240308.1 | NC_007058_p3 | protein of an unannotated phage | phrog_64 | portal protein | head and packaging | 1 | 1770 | 3194 |
| YP_240330.1 | NC_007058_p25 | protein of an unannotated phage | phrog_1125 | tail fiber protein | tail | 1 | 22573 | 23745 |
| YP_240360.1 | NC_007058_p55 | protein of an unannotated phage | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 36516 | 37295 |
| YP_240315.1 | NC_007058_p10 | protein of an unannotated phage | phrog_5 | tail completion or Neck1 protein | connector | 1 | 6604 | 6906 |
| YP_240312.1 | NC_007058_p7 | protein of an unannotated phage | phrog_390 | Arc-like repressor | transcription regulation | 1 | 5685 | 6011 |
| YP_240377.1 | NC_007058_p72 | protein of an unannotated phage | phrog_2409 | unknown function | unknown function | 1 | 42014 | 42379 |
| YP_240366.1 | NC_007058_p61 | protein of an unannotated phage | phrog_236 | nucleotide kinase | other | 1 | 38643 | 38897 |
| YP_240331.1 | NC_007058_p26 | protein of an unannotated phage | phrog_1262 | unknown function | unknown function | 1 | 23751 | 24146 |
| YP_240327.1 | NC_007058_p22 | protein of an unannotated phage | phrog_134 | unknown function | unknown function | 1 | 20033 | 20209 |
| YP_240365.1 | NC_007058_p60 | protein of an unannotated phage | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 38284 | 38643 |
| YP_240332.1 | NC_007058_p27 | protein of an unannotated phage | phrog_263 | holin | lysis | 1 | 24202 | 24504 |
| YP_240347.1 | NC_007058_p42 | protein of an unannotated phage | phrog_369 | unknown function | unknown function | 1 | 31918 | 32079 |
| YP_240371.1 | NC_007058_p66 | protein of an unannotated phage | phrog_266 | unknown function | unknown function | 1 | 40206 | 40460 |
| YP_240373.1 | NC_007058_p68 | protein of an unannotated phage | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 40610 | 41140 |