Genomic map of Staphylococcus virus 55 (NC_007060)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_007060
Definition
Staphylococcus phage 55, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus.
DB of origin
REFSEQ
Length
41902
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
77
%GC
35.72
Number of singletons
4
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_240503.1 NC_007060_p52 protein of an unannotated phage phrog_989 unknown function unknown function 1 32694 32915
YP_240479.1 NC_007060_p28 protein of an unannotated phage phrog_759 tail associated cell-wall hydrolase other 1 19608 21482
YP_240457.1 NC_007060_p6 protein of an unannotated phage phrog_28643 unknown function unknown function 1 4029 4136
YP_240485.1 NC_007060_p34 protein of an unannotated phage singleton unknown function unknown function 1 23965 24072
YP_240487.1 NC_007060_p36 protein of an unannotated phage phrog_1529 unknown function unknown function 1 25630 25815
YP_240522.1 NC_007060_p71 protein of an unannotated phage phrog_266 unknown function unknown function 1 39859 40107
YP_240468.1 NC_007060_p17 protein of an unannotated phage phrog_1404 tail protein tail 1 8687 9028
YP_240505.1 NC_007060_p54 protein of an unannotated phage phrog_401 unknown function unknown function 1 33161 33421
YP_240480.1 NC_007060_p29 protein of an unannotated phage phrog_1125 tail fiber protein tail 1 21495 22733
YP_240483.1 NC_007060_p32 protein of an unannotated phage phrog_962 holin lysis 1 23189 23626
YP_240474.1 NC_007060_p23 protein of an unannotated phage phrog_257 minor tail protein tail 1 16755 18578
YP_240528.1 NC_007060_p77 protein of an unannotated phage singleton unknown function unknown function -1 41623 41877
YP_240460.1 NC_007060_p9 protein of an unannotated phage phrog_390 Arc-like repressor transcription regulation 1 5745 6071
YP_240464.1 NC_007060_p13 protein of an unannotated phage phrog_31766 unknown function unknown function 1 6899 7075
YP_240498.1 NC_007060_p47 protein of an unannotated phage phrog_3 transcriptional repressor transcription regulation 1 30859 31044
YP_240476.1 NC_007060_p25 protein of an unannotated phage phrog_300 tail fiber protein tail 1 18578 18955
YP_240466.1 NC_007060_p15 protein of an unannotated phage phrog_238 major tail protein tail 1 7550 8110
YP_240488.1 NC_007060_p37 protein of an unannotated phage phrog_26562 unknown function unknown function -1 25903 26040
YP_240514.1 NC_007060_p63 protein of an unannotated phage phrog_809 transcriptional regulator transcription regulation 1 37562 37720
YP_240510.1 NC_007060_p59 protein of an unannotated phage phrog_20102 unknown function unknown function 1 35058 35261
YP_240481.1 NC_007060_p30 protein of an unannotated phage singleton unknown function unknown function -1 21569 21697
YP_240511.1 NC_007060_p60 protein of an unannotated phage phrog_398 unknown function unknown function 1 35282 35974
YP_240484.1 NC_007060_p33 protein of an unannotated phage phrog_635 endolysin lysis 1 23607 25052
YP_240504.1 NC_007060_p53 protein of an unannotated phage phrog_369 unknown function unknown function 1 32908 33069
YP_240458.1 NC_007060_p7 protein of an unannotated phage phrog_194 head scaffolding protein head and packaging 1 4287 4883
YP_240465.1 NC_007060_p14 protein of an unannotated phage phrog_176 tail terminator connector 1 7126 7563
YP_240527.1 NC_007060_p76 protein of an unannotated phage phrog_1058 unknown function unknown function 1 41292 41693
YP_240515.1 NC_007060_p64 protein of an unannotated phage phrog_433 unknown function unknown function 1 37733 37954
YP_240461.1 NC_007060_p10 protein of an unannotated phage phrog_1161 head-tail adaptor connector 1 6071 6385
YP_240486.1 NC_007060_p35 protein of an unannotated phage phrog_35522 unknown function unknown function 1 25518 25628
YP_240496.1 NC_007060_p45 protein of an unannotated phage phrog_3 transcriptional repressor transcription regulation 1 29804 30052
YP_240455.1 NC_007060_p4 protein of an unannotated phage phrog_115 minor head protein head and packaging 1 3227 4189
YP_240508.1 NC_007060_p57 protein of an unannotated phage phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 34718 35269
YP_240501.1 NC_007060_p50 protein of an unannotated phage phrog_7948 unknown function unknown function -1 31970 32623
YP_240512.1 NC_007060_p61 protein of an unannotated phage phrog_1163 unknown function unknown function 1 35946 36767
YP_240493.1 NC_007060_p42 protein of an unannotated phage singleton unknown function unknown function -1 28602 28745
YP_240506.1 NC_007060_p55 protein of an unannotated phage phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 33436 33915
YP_240524.1 NC_007060_p73 protein of an unannotated phage phrog_2027 unknown function unknown function 1 40673 40918
YP_240523.1 NC_007060_p72 protein of an unannotated phage phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 40100 40636
YP_240472.1 NC_007060_p21 protein of an unannotated phage phrog_663 minor head protein head and packaging 1 12961 14844
YP_240497.1 NC_007060_p46 protein of an unannotated phage phrog_847 anti-repressor Ant transcription regulation 1 30065 30508
YP_240452.1 NC_007060_p1 protein of an unannotated phage phrog_1595 terminase small subunit head and packaging 1 266 637
YP_240509.1 NC_007060_p58 protein of an unannotated phage phrog_36124 unknown function unknown function -1 34781 34900
YP_240502.1 NC_007060_p51 protein of an unannotated phage phrog_26514 unknown function unknown function 1 32156 32368
YP_240475.1 NC_007060_p24 protein of an unannotated phage phrog_23714 unknown function unknown function 1 18052 18273
YP_240470.1 NC_007060_p19 protein of an unannotated phage phrog_31249 unknown function unknown function -1 11139 11942
YP_240507.1 NC_007060_p56 protein of an unannotated phage phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 33915 34688
YP_240490.1 NC_007060_p39 protein of an unannotated phage phrog_7090 unknown function unknown function 1 26459 26842
YP_240521.1 NC_007060_p70 protein of an unannotated phage phrog_1034 unknown function unknown function 1 39591 39866
YP_240495.1 NC_007060_p44 protein of an unannotated phage phrog_8 transcriptional regulator transcription regulation -1 29298 29627
YP_240518.1 NC_007060_p67 protein of an unannotated phage phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 38559 38927
YP_240491.1 NC_007060_p40 protein of an unannotated phage phrog_1 integrase integration and excision -1 27182 28231
YP_240494.1 NC_007060_p43 protein of an unannotated phage phrog_87 metallo-protease other -1 28815 29276
YP_240516.1 NC_007060_p65 protein of an unannotated phage phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 37964 38368
YP_240478.1 NC_007060_p27 protein of an unannotated phage phrog_276 unknown function unknown function 1 19172 19471
YP_240519.1 NC_007060_p68 protein of an unannotated phage phrog_258 virulence associated other 1 38931 39173
YP_240489.1 NC_007060_p38 protein of an unannotated phage phrog_7919 unknown function unknown function 1 26161 26472
YP_240463.1 NC_007060_p12 protein of an unannotated phage phrog_5 tail completion or Neck1 protein connector 1 6700 7113
YP_240459.1 NC_007060_p8 protein of an unannotated phage phrog_544 major head protein head and packaging 1 4904 5728
YP_240513.1 NC_007060_p62 protein of an unannotated phage phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 36780 37565
YP_240517.1 NC_007060_p66 protein of an unannotated phage phrog_299 unknown function unknown function 1 38373 38558
YP_240477.1 NC_007060_p26 protein of an unannotated phage phrog_134 unknown function unknown function 1 18959 19132
YP_240492.1 NC_007060_p41 protein of an unannotated phage phrog_4037 unknown function unknown function -1 28297 28797
YP_240520.1 NC_007060_p69 protein of an unannotated phage phrog_467 unknown function unknown function 1 39187 39591
YP_240526.1 NC_007060_p75 protein of an unannotated phage phrog_152 RinB-like transcriptional activator transcription regulation 1 41118 41291
YP_240482.1 NC_007060_p31 protein of an unannotated phage phrog_1262 unknown function unknown function 1 22738 23133
YP_240469.1 NC_007060_p18 protein of an unannotated phage phrog_58 tail length tape measure protein tail 1 9031 12000
YP_240499.1 NC_007060_p48 protein of an unannotated phage phrog_63 anti-repressor Ant transcription regulation 1 31046 31801
YP_240462.1 NC_007060_p11 protein of an unannotated phage phrog_25 head closure Hc1 connector 1 6378 6713
YP_240473.1 NC_007060_p22 protein of an unannotated phage phrog_287 minor tail protein tail 1 14857 16755
YP_240525.1 NC_007060_p74 protein of an unannotated phage phrog_278 transcriptional regulator transcription regulation 1 40915 41121
YP_240456.1 NC_007060_p5 protein of an unannotated phage phrog_32331 unknown function unknown function -1 3941 4210
YP_240453.1 NC_007060_p2 protein of an unannotated phage phrog_2 terminase large subunit head and packaging 1 627 1838
YP_240500.1 NC_007060_p49 protein of an unannotated phage phrog_1263 unknown function unknown function 1 31817 31960
YP_240454.1 NC_007060_p3 protein of an unannotated phage phrog_64 portal protein head and packaging 1 1852 3270
YP_240467.1 NC_007060_p16 protein of an unannotated phage phrog_183 tail chaperone protein tail 1 8172 8666
YP_240471.1 NC_007060_p20 protein of an unannotated phage phrog_33 distal tail protein Dit tail 1 12015 12950