| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_007060 |
Definition |
Staphylococcus phage 55, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus. |
DB of origin |
REFSEQ |
Length |
41902 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
77 |
%GC |
35.72 |
Number of singletons |
4 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_240503.1 | NC_007060_p52 | protein of an unannotated phage | phrog_989 | unknown function | unknown function | 1 | 32694 | 32915 |
| YP_240479.1 | NC_007060_p28 | protein of an unannotated phage | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 19608 | 21482 |
| YP_240457.1 | NC_007060_p6 | protein of an unannotated phage | phrog_28643 | unknown function | unknown function | 1 | 4029 | 4136 |
| YP_240485.1 | NC_007060_p34 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 23965 | 24072 |
| YP_240487.1 | NC_007060_p36 | protein of an unannotated phage | phrog_1529 | unknown function | unknown function | 1 | 25630 | 25815 |
| YP_240522.1 | NC_007060_p71 | protein of an unannotated phage | phrog_266 | unknown function | unknown function | 1 | 39859 | 40107 |
| YP_240468.1 | NC_007060_p17 | protein of an unannotated phage | phrog_1404 | tail protein | tail | 1 | 8687 | 9028 |
| YP_240505.1 | NC_007060_p54 | protein of an unannotated phage | phrog_401 | unknown function | unknown function | 1 | 33161 | 33421 |
| YP_240480.1 | NC_007060_p29 | protein of an unannotated phage | phrog_1125 | tail fiber protein | tail | 1 | 21495 | 22733 |
| YP_240483.1 | NC_007060_p32 | protein of an unannotated phage | phrog_962 | holin | lysis | 1 | 23189 | 23626 |
| YP_240474.1 | NC_007060_p23 | protein of an unannotated phage | phrog_257 | minor tail protein | tail | 1 | 16755 | 18578 |
| YP_240528.1 | NC_007060_p77 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 41623 | 41877 |
| YP_240460.1 | NC_007060_p9 | protein of an unannotated phage | phrog_390 | Arc-like repressor | transcription regulation | 1 | 5745 | 6071 |
| YP_240464.1 | NC_007060_p13 | protein of an unannotated phage | phrog_31766 | unknown function | unknown function | 1 | 6899 | 7075 |
| YP_240498.1 | NC_007060_p47 | protein of an unannotated phage | phrog_3 | transcriptional repressor | transcription regulation | 1 | 30859 | 31044 |
| YP_240476.1 | NC_007060_p25 | protein of an unannotated phage | phrog_300 | tail fiber protein | tail | 1 | 18578 | 18955 |
| YP_240466.1 | NC_007060_p15 | protein of an unannotated phage | phrog_238 | major tail protein | tail | 1 | 7550 | 8110 |
| YP_240488.1 | NC_007060_p37 | protein of an unannotated phage | phrog_26562 | unknown function | unknown function | -1 | 25903 | 26040 |
| YP_240514.1 | NC_007060_p63 | protein of an unannotated phage | phrog_809 | transcriptional regulator | transcription regulation | 1 | 37562 | 37720 |
| YP_240510.1 | NC_007060_p59 | protein of an unannotated phage | phrog_20102 | unknown function | unknown function | 1 | 35058 | 35261 |
| YP_240481.1 | NC_007060_p30 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 21569 | 21697 |
| YP_240511.1 | NC_007060_p60 | protein of an unannotated phage | phrog_398 | unknown function | unknown function | 1 | 35282 | 35974 |
| YP_240484.1 | NC_007060_p33 | protein of an unannotated phage | phrog_635 | endolysin | lysis | 1 | 23607 | 25052 |
| YP_240504.1 | NC_007060_p53 | protein of an unannotated phage | phrog_369 | unknown function | unknown function | 1 | 32908 | 33069 |
| YP_240458.1 | NC_007060_p7 | protein of an unannotated phage | phrog_194 | head scaffolding protein | head and packaging | 1 | 4287 | 4883 |
| YP_240465.1 | NC_007060_p14 | protein of an unannotated phage | phrog_176 | tail terminator | connector | 1 | 7126 | 7563 |
| YP_240527.1 | NC_007060_p76 | protein of an unannotated phage | phrog_1058 | unknown function | unknown function | 1 | 41292 | 41693 |
| YP_240515.1 | NC_007060_p64 | protein of an unannotated phage | phrog_433 | unknown function | unknown function | 1 | 37733 | 37954 |
| YP_240461.1 | NC_007060_p10 | protein of an unannotated phage | phrog_1161 | head-tail adaptor | connector | 1 | 6071 | 6385 |
| YP_240486.1 | NC_007060_p35 | protein of an unannotated phage | phrog_35522 | unknown function | unknown function | 1 | 25518 | 25628 |
| YP_240496.1 | NC_007060_p45 | protein of an unannotated phage | phrog_3 | transcriptional repressor | transcription regulation | 1 | 29804 | 30052 |
| YP_240455.1 | NC_007060_p4 | protein of an unannotated phage | phrog_115 | minor head protein | head and packaging | 1 | 3227 | 4189 |
| YP_240508.1 | NC_007060_p57 | protein of an unannotated phage | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 34718 | 35269 |
| YP_240501.1 | NC_007060_p50 | protein of an unannotated phage | phrog_7948 | unknown function | unknown function | -1 | 31970 | 32623 |
| YP_240512.1 | NC_007060_p61 | protein of an unannotated phage | phrog_1163 | unknown function | unknown function | 1 | 35946 | 36767 |
| YP_240493.1 | NC_007060_p42 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 28602 | 28745 |
| YP_240506.1 | NC_007060_p55 | protein of an unannotated phage | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 33436 | 33915 |
| YP_240524.1 | NC_007060_p73 | protein of an unannotated phage | phrog_2027 | unknown function | unknown function | 1 | 40673 | 40918 |
| YP_240523.1 | NC_007060_p72 | protein of an unannotated phage | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 40100 | 40636 |
| YP_240472.1 | NC_007060_p21 | protein of an unannotated phage | phrog_663 | minor head protein | head and packaging | 1 | 12961 | 14844 |
| YP_240497.1 | NC_007060_p46 | protein of an unannotated phage | phrog_847 | anti-repressor Ant | transcription regulation | 1 | 30065 | 30508 |
| YP_240452.1 | NC_007060_p1 | protein of an unannotated phage | phrog_1595 | terminase small subunit | head and packaging | 1 | 266 | 637 |
| YP_240509.1 | NC_007060_p58 | protein of an unannotated phage | phrog_36124 | unknown function | unknown function | -1 | 34781 | 34900 |
| YP_240502.1 | NC_007060_p51 | protein of an unannotated phage | phrog_26514 | unknown function | unknown function | 1 | 32156 | 32368 |
| YP_240475.1 | NC_007060_p24 | protein of an unannotated phage | phrog_23714 | unknown function | unknown function | 1 | 18052 | 18273 |
| YP_240470.1 | NC_007060_p19 | protein of an unannotated phage | phrog_31249 | unknown function | unknown function | -1 | 11139 | 11942 |
| YP_240507.1 | NC_007060_p56 | protein of an unannotated phage | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 33915 | 34688 |
| YP_240490.1 | NC_007060_p39 | protein of an unannotated phage | phrog_7090 | unknown function | unknown function | 1 | 26459 | 26842 |
| YP_240521.1 | NC_007060_p70 | protein of an unannotated phage | phrog_1034 | unknown function | unknown function | 1 | 39591 | 39866 |
| YP_240495.1 | NC_007060_p44 | protein of an unannotated phage | phrog_8 | transcriptional regulator | transcription regulation | -1 | 29298 | 29627 |
| YP_240518.1 | NC_007060_p67 | protein of an unannotated phage | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 38559 | 38927 |
| YP_240491.1 | NC_007060_p40 | protein of an unannotated phage | phrog_1 | integrase | integration and excision | -1 | 27182 | 28231 |
| YP_240494.1 | NC_007060_p43 | protein of an unannotated phage | phrog_87 | metallo-protease | other | -1 | 28815 | 29276 |
| YP_240516.1 | NC_007060_p65 | protein of an unannotated phage | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 37964 | 38368 |
| YP_240478.1 | NC_007060_p27 | protein of an unannotated phage | phrog_276 | unknown function | unknown function | 1 | 19172 | 19471 |
| YP_240519.1 | NC_007060_p68 | protein of an unannotated phage | phrog_258 | virulence associated | other | 1 | 38931 | 39173 |
| YP_240489.1 | NC_007060_p38 | protein of an unannotated phage | phrog_7919 | unknown function | unknown function | 1 | 26161 | 26472 |
| YP_240463.1 | NC_007060_p12 | protein of an unannotated phage | phrog_5 | tail completion or Neck1 protein | connector | 1 | 6700 | 7113 |
| YP_240459.1 | NC_007060_p8 | protein of an unannotated phage | phrog_544 | major head protein | head and packaging | 1 | 4904 | 5728 |
| YP_240513.1 | NC_007060_p62 | protein of an unannotated phage | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 36780 | 37565 |
| YP_240517.1 | NC_007060_p66 | protein of an unannotated phage | phrog_299 | unknown function | unknown function | 1 | 38373 | 38558 |
| YP_240477.1 | NC_007060_p26 | protein of an unannotated phage | phrog_134 | unknown function | unknown function | 1 | 18959 | 19132 |
| YP_240492.1 | NC_007060_p41 | protein of an unannotated phage | phrog_4037 | unknown function | unknown function | -1 | 28297 | 28797 |
| YP_240520.1 | NC_007060_p69 | protein of an unannotated phage | phrog_467 | unknown function | unknown function | 1 | 39187 | 39591 |
| YP_240526.1 | NC_007060_p75 | protein of an unannotated phage | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 41118 | 41291 |
| YP_240482.1 | NC_007060_p31 | protein of an unannotated phage | phrog_1262 | unknown function | unknown function | 1 | 22738 | 23133 |
| YP_240469.1 | NC_007060_p18 | protein of an unannotated phage | phrog_58 | tail length tape measure protein | tail | 1 | 9031 | 12000 |
| YP_240499.1 | NC_007060_p48 | protein of an unannotated phage | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 31046 | 31801 |
| YP_240462.1 | NC_007060_p11 | protein of an unannotated phage | phrog_25 | head closure Hc1 | connector | 1 | 6378 | 6713 |
| YP_240473.1 | NC_007060_p22 | protein of an unannotated phage | phrog_287 | minor tail protein | tail | 1 | 14857 | 16755 |
| YP_240525.1 | NC_007060_p74 | protein of an unannotated phage | phrog_278 | transcriptional regulator | transcription regulation | 1 | 40915 | 41121 |
| YP_240456.1 | NC_007060_p5 | protein of an unannotated phage | phrog_32331 | unknown function | unknown function | -1 | 3941 | 4210 |
| YP_240453.1 | NC_007060_p2 | protein of an unannotated phage | phrog_2 | terminase large subunit | head and packaging | 1 | 627 | 1838 |
| YP_240500.1 | NC_007060_p49 | protein of an unannotated phage | phrog_1263 | unknown function | unknown function | 1 | 31817 | 31960 |
| YP_240454.1 | NC_007060_p3 | protein of an unannotated phage | phrog_64 | portal protein | head and packaging | 1 | 1852 | 3270 |
| YP_240467.1 | NC_007060_p16 | protein of an unannotated phage | phrog_183 | tail chaperone protein | tail | 1 | 8172 | 8666 |
| YP_240471.1 | NC_007060_p20 | protein of an unannotated phage | phrog_33 | distal tail protein Dit | tail | 1 | 12015 | 12950 |