| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_007061 |
Definition |
Staphylococcus phage 29, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus. |
DB of origin |
REFSEQ |
Length |
42802 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
67 |
%GC |
35.37 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_240602.1 | NC_007061_p66 | protein of an unannotated phage | phrog_1367 | unknown function | unknown function | 1 | 41940 | 42086 |
| YP_240565.1 | NC_007061_p31 | protein of an unannotated phage | phrog_18260 | unknown function | unknown function | 1 | 26493 | 27134 |
| YP_240584.1 | NC_007061_p49 | protein of an unannotated phage | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 34818 | 35369 |
| YP_240557.1 | NC_007061_p24 | protein of an unannotated phage | phrog_1125 | tail fiber protein | tail | 1 | 21648 | 22820 |
| YP_240559.1 | NC_007061_p26 | protein of an unannotated phage | phrog_962 | holin | lysis | 1 | 23277 | 23714 |
| YP_240562.1 | NC_007061_p28 | protein of an unannotated phage | phrog_20463 | unknown function | unknown function | -1 | 25315 | 25416 |
| YP_240550.1 | NC_007061_p18 | protein of an unannotated phage | phrog_287 | minor tail protein | tail | 1 | 15003 | 16901 |
| YP_240553.1 | NC_007061_p20 | protein of an unannotated phage | phrog_300 | tail fiber protein | tail | 1 | 18724 | 19101 |
| YP_240575.1 | NC_007061_p41 | protein of an unannotated phage | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 31825 | 32568 |
| YP_240588.1 | NC_007061_p52 | protein of an unannotated phage | phrog_2289 | helicase loader | DNA, RNA and nucleotide metabolism | 1 | 36852 | 37208 |
| YP_240587.1 | NC_007061_p51 | protein of an unannotated phage | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 36046 | 36852 |
| YP_240583.1 | NC_007061_p48 | protein of an unannotated phage | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 34001 | 34789 |
| YP_240570.1 | NC_007061_p36 | protein of an unannotated phage | phrog_4 | transcriptional repressor | transcription regulation | -1 | 29764 | 30393 |
| YP_240532.1 | NC_007061_p3 | protein of an unannotated phage | phrog_115 | minor head protein | head and packaging | 1 | 3124 | 4104 |
| YP_240596.1 | NC_007061_p60 | protein of an unannotated phage | phrog_266 | unknown function | unknown function | 1 | 40114 | 40371 |
| YP_240573.1 | NC_007061_p39 | protein of an unannotated phage | phrog_8835 | unknown function | unknown function | -1 | 30951 | 31199 |
| YP_240593.1 | NC_007061_p57 | protein of an unannotated phage | phrog_299 | unknown function | unknown function | 1 | 39303 | 39488 |
| YP_240537.1 | NC_007061_p7 | protein of an unannotated phage | phrog_390 | Arc-like repressor | transcription regulation | 1 | 5714 | 6040 |
| YP_240539.1 | NC_007061_p9 | protein of an unannotated phage | phrog_25 | head closure Hc1 | connector | 1 | 6347 | 6682 |
| YP_240598.1 | NC_007061_p62 | protein of an unannotated phage | phrog_278 | transcriptional regulator | transcription regulation | 1 | 40910 | 41146 |
| YP_240591.1 | NC_007061_p55 | protein of an unannotated phage | phrog_433 | unknown function | unknown function | 1 | 38662 | 38883 |
| YP_240571.1 | NC_007061_p37 | protein of an unannotated phage | phrog_3 | transcriptional repressor | transcription regulation | 1 | 30547 | 30774 |
| YP_240540.1 | NC_007061_p10 | protein of an unannotated phage | phrog_5 | tail completion or Neck1 protein | connector | 1 | 6669 | 7082 |
| YP_240555.1 | NC_007061_p22 | protein of an unannotated phage | phrog_276 | unknown function | unknown function | 1 | 19325 | 19624 |
| YP_240595.1 | NC_007061_p59 | protein of an unannotated phage | phrog_258 | virulence associated | other | 1 | 39861 | 40109 |
| YP_240592.1 | NC_007061_p56 | protein of an unannotated phage | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 38894 | 39298 |
| YP_240576.1 | NC_007061_p42 | protein of an unannotated phage | phrog_2312 | unknown function | unknown function | 1 | 32593 | 32769 |
| YP_240544.1 | NC_007061_p13 | protein of an unannotated phage | phrog_183 | tail chaperone protein | tail | 1 | 8141 | 8635 |
| YP_240554.1 | NC_007061_p21 | protein of an unannotated phage | phrog_134 | unknown function | unknown function | 1 | 19102 | 19284 |
| YP_240577.1 | NC_007061_p43 | protein of an unannotated phage | phrog_2222 | unknown function | unknown function | -1 | 32744 | 32974 |
| YP_240566.1 | NC_007061_p32 | protein of an unannotated phage | phrog_1 | integrase | integration and excision | -1 | 27477 | 28523 |
| YP_240551.1 | NC_007061_p19 | protein of an unannotated phage | phrog_257 | minor tail protein | tail | 1 | 16901 | 18724 |
| YP_240563.1 | NC_007061_p29 | protein of an unannotated phage | phrog_26562 | unknown function | unknown function | -1 | 25549 | 25686 |
| YP_240564.1 | NC_007061_p30 | protein of an unannotated phage | phrog_19015 | unknown function | unknown function | 1 | 25816 | 26478 |
| YP_240601.1 | NC_007061_p65 | protein of an unannotated phage | phrog_2409 | unknown function | unknown function | 1 | 41574 | 41939 |
| YP_240546.1 | NC_007061_p15 | protein of an unannotated phage | phrog_58 | tail length tape measure protein | tail | 1 | 9000 | 12143 |
| YP_240531.1 | NC_007061_p2 | protein of an unannotated phage | phrog_64 | portal protein | head and packaging | 1 | 1707 | 3185 |
| YP_240579.1 | NC_007061_p45 | protein of an unannotated phage | phrog_369 | unknown function | unknown function | 1 | 33259 | 33420 |
| YP_240572.1 | NC_007061_p38 | protein of an unannotated phage | phrog_6431 | unknown function | unknown function | 1 | 30797 | 30958 |
| YP_240548.1 | NC_007061_p16 | protein of an unannotated phage | phrog_33 | distal tail protein Dit | tail | 1 | 12158 | 13093 |
| YP_240536.1 | NC_007061_p6 | protein of an unannotated phage | phrog_422 | major head protein | head and packaging | 1 | 4738 | 5697 |
| YP_240568.1 | NC_007061_p34 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 28795 | 29196 |
| YP_240599.1 | NC_007061_p63 | protein of an unannotated phage | phrog_555 | unknown function | unknown function | 1 | 41171 | 41407 |
| YP_240556.1 | NC_007061_p23 | protein of an unannotated phage | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 19761 | 21635 |
| YP_240534.1 | NC_007061_p4 | protein of an unannotated phage | phrog_194 | head scaffolding protein | head and packaging | 1 | 4202 | 4726 |
| YP_240542.1 | NC_007061_p11 | protein of an unannotated phage | phrog_176 | tail terminator | connector | 1 | 7095 | 7532 |
| YP_240538.1 | NC_007061_p8 | protein of an unannotated phage | phrog_1161 | head-tail adaptor | connector | 1 | 6040 | 6354 |
| YP_240603.1 | NC_007061_p67 | protein of an unannotated phage | phrog_36 | transcriptional regulator | transcription regulation | 1 | 42111 | 42533 |
| YP_240574.1 | NC_007061_p40 | protein of an unannotated phage | phrog_3 | transcriptional repressor | transcription regulation | 1 | 31638 | 31823 |
| YP_240569.1 | NC_007061_p35 | protein of an unannotated phage | phrog_19345 | unknown function | unknown function | -1 | 29525 | 29728 |
| YP_240590.1 | NC_007061_p54 | protein of an unannotated phage | phrog_3161 | unknown function | unknown function | 1 | 38443 | 38658 |
| YP_240578.1 | NC_007061_p44 | protein of an unannotated phage | phrog_989 | unknown function | unknown function | 1 | 33045 | 33266 |
| YP_240543.1 | NC_007061_p12 | protein of an unannotated phage | phrog_238 | major tail protein | tail | 1 | 7519 | 8079 |
| YP_240567.1 | NC_007061_p33 | protein of an unannotated phage | phrog_2033 | excisionase | integration and excision | 1 | 28636 | 28815 |
| YP_240600.1 | NC_007061_p64 | protein of an unannotated phage | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 41397 | 41573 |
| YP_240586.1 | NC_007061_p50 | protein of an unannotated phage | phrog_398 | unknown function | unknown function | 1 | 35382 | 36074 |
| YP_240582.1 | NC_007061_p47 | protein of an unannotated phage | phrog_946 | unknown function | unknown function | 1 | 33787 | 34008 |
| YP_240581.1 | NC_007061_p46 | protein of an unannotated phage | phrog_401 | unknown function | unknown function | 1 | 33517 | 33777 |
| YP_240549.1 | NC_007061_p17 | protein of an unannotated phage | phrog_663 | minor head protein | head and packaging | 1 | 13104 | 14990 |
| YP_240558.1 | NC_007061_p25 | protein of an unannotated phage | phrog_1262 | unknown function | unknown function | 1 | 22826 | 23221 |
| YP_240589.1 | NC_007061_p53 | protein of an unannotated phage | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 37205 | 38446 |
| YP_240530.1 | NC_007061_p1 | protein of an unannotated phage | phrog_2 | terminase large subunit | head and packaging | 1 | 545 | 1753 |
| YP_240545.1 | NC_007061_p14 | protein of an unannotated phage | phrog_1404 | tail protein | tail | 1 | 8656 | 8997 |
| YP_240594.1 | NC_007061_p58 | protein of an unannotated phage | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 39489 | 39860 |
| YP_240560.1 | NC_007061_p27 | protein of an unannotated phage | phrog_635 | endolysin | lysis | 1 | 23695 | 25140 |
| YP_240597.1 | NC_007061_p61 | protein of an unannotated phage | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 40364 | 40873 |
| YP_240535.1 | NC_007061_p5 | protein of an unannotated phage | phrog_38668 | unknown function | unknown function | 1 | 4599 | 4721 |