Genomic map of Staphylococcus virus 52a (NC_007062)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_007062
Definition
Staphylococcus phage 52A, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus.
DB of origin
REFSEQ
Length
41690
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
60
%GC
35.53
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_240664.1 NC_007062_p56 protein of an unannotated phage phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 39887 40414
YP_240604.1 NC_007062_p1 protein of an unannotated phage singleton unknown function unknown function 1 462 629
YP_001551740.1 NC_007062_p15 protein of an unannotated phage phrog_1404 tail protein tail 1 8733 9074
YP_240631.1 NC_007062_p25 protein of an unannotated phage phrog_1125 tail fiber protein tail 1 21725 22963
YP_240667.1 NC_007062_p59 protein of an unannotated phage phrog_152 RinB-like transcriptional activator transcription regulation 1 40896 41069
YP_240613.1 NC_007062_p9 protein of an unannotated phage phrog_1161 head-tail adaptor connector 1 6117 6431
YP_240661.1 NC_007062_p53 protein of an unannotated phage phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 39039 39401
YP_240649.1 NC_007062_p41 protein of an unannotated phage phrog_401 unknown function unknown function 1 33175 33435
YP_240621.1 NC_007062_p17 protein of an unannotated phage phrog_33 distal tail protein Dit tail 1 12235 13170
YP_240612.1 NC_007062_p8 protein of an unannotated phage phrog_390 Arc-like repressor transcription regulation 1 5791 6117
YP_240627.1 NC_007062_p21 protein of an unannotated phage phrog_300 tail fiber protein tail 1 18801 19178
YP_240614.1 NC_007062_p10 protein of an unannotated phage phrog_25 head closure Hc1 connector 1 6424 6759
YP_240618.1 NC_007062_p13 protein of an unannotated phage phrog_238 major tail protein tail 1 7596 8156
YP_240644.1 NC_007062_p37 protein of an unannotated phage phrog_463 anti-repressor transcription regulation 1 31626 32351
YP_240656.1 NC_007062_p48 protein of an unannotated phage phrog_809 transcriptional regulator transcription regulation 1 37617 37778
YP_240638.1 NC_007062_p31 protein of an unannotated phage phrog_1 integrase integration and excision -1 28124 29329
YP_240611.1 NC_007062_p7 protein of an unannotated phage phrog_422 major head protein head and packaging 1 4815 5774
YP_240610.1 NC_007062_p6 protein of an unannotated phage phrog_38668 unknown function unknown function 1 4676 4798
YP_240632.1 NC_007062_p26 protein of an unannotated phage phrog_1262 unknown function unknown function 1 22968 23363
YP_240605.1 NC_007062_p2 protein of an unannotated phage phrog_2 terminase large subunit head and packaging 1 622 1830
YP_240652.1 NC_007062_p44 protein of an unannotated phage phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 34794 35348
YP_240639.1 NC_007062_p32 protein of an unannotated phage phrog_4037 unknown function unknown function -1 29393 29893
YP_240643.1 NC_007062_p36 protein of an unannotated phage phrog_3 transcriptional repressor transcription regulation 1 31378 31587
YP_240665.1 NC_007062_p57 protein of an unannotated phage phrog_2027 unknown function unknown function 1 40451 40696
YP_240662.1 NC_007062_p54 protein of an unannotated phage phrog_258 virulence associated other 1 39402 39650
YP_240625.1 NC_007062_p20 protein of an unannotated phage phrog_257 minor tail protein tail 1 16978 18801
YP_240615.1 NC_007062_p11 protein of an unannotated phage phrog_5 tail completion or Neck1 protein connector 1 6809 7159
YP_240629.1 NC_007062_p23 protein of an unannotated phage phrog_276 unknown function unknown function 1 19402 19701
YP_240606.1 NC_007062_p3 protein of an unannotated phage phrog_64 portal protein head and packaging 1 1784 3262
YP_240609.1 NC_007062_p5 protein of an unannotated phage phrog_194 head scaffolding protein head and packaging 1 4279 4803
YP_240636.1 NC_007062_p29 protein of an unannotated phage phrog_3162 unknown function unknown function 1 26059 26853
YP_240660.1 NC_007062_p52 protein of an unannotated phage phrog_299 unknown function unknown function 1 38853 39038
YP_240648.1 NC_007062_p40 protein of an unannotated phage phrog_2182 unknown function unknown function 1 32853 33170
YP_240634.1 NC_007062_p28 protein of an unannotated phage phrog_635 endolysin lysis 1 23837 25282
YP_240630.1 NC_007062_p24 protein of an unannotated phage phrog_759 tail associated cell-wall hydrolase other 1 19838 21712
YP_240654.1 NC_007062_p46 protein of an unannotated phage phrog_1163 unknown function unknown function 1 36025 36840
YP_240646.1 NC_007062_p39 protein of an unannotated phage phrog_369 unknown function unknown function 1 32599 32760
YP_240607.1 NC_007062_p4 protein of an unannotated phage phrog_115 minor head protein head and packaging 1 3201 4181
YP_240651.1 NC_007062_p43 protein of an unannotated phage phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 33985 34764
YP_240620.1 NC_007062_p16 protein of an unannotated phage phrog_58 tail length tape measure protein tail 1 9077 12220
YP_240628.1 NC_007062_p22 protein of an unannotated phage phrog_134 unknown function unknown function 1 19179 19361
YP_240659.1 NC_007062_p51 protein of an unannotated phage phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 38444 38848
YP_240622.1 NC_007062_p18 protein of an unannotated phage phrog_663 minor head protein head and packaging 1 13181 15067
YP_240655.1 NC_007062_p47 protein of an unannotated phage phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 36850 37623
YP_240619.1 NC_007062_p14 protein of an unannotated phage phrog_183 tail chaperone protein tail 1 8218 8712
YP_240668.1 NC_007062_p60 protein of an unannotated phage phrog_1058 unknown function unknown function 1 41070 41471
YP_240642.1 NC_007062_p35 protein of an unannotated phage phrog_8 transcriptional regulator transcription regulation -1 30937 31215
YP_240641.1 NC_007062_p34 protein of an unannotated phage phrog_87 metallo-protease other -1 30409 30867
YP_240657.1 NC_007062_p49 protein of an unannotated phage phrog_433 unknown function unknown function 1 37791 38012
YP_240637.1 NC_007062_p30 protein of an unannotated phage phrog_7610 unknown function unknown function 1 26860 27597
YP_240666.1 NC_007062_p58 protein of an unannotated phage phrog_278 transcriptional regulator transcription regulation 1 40693 40899
YP_240650.1 NC_007062_p42 protein of an unannotated phage phrog_2205 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 33448 33984
YP_240653.1 NC_007062_p45 protein of an unannotated phage phrog_398 unknown function unknown function 1 35361 36053
YP_240658.1 NC_007062_p50 protein of an unannotated phage phrog_111 DNA methyltransferase other 1 38022 38447
YP_240633.1 NC_007062_p27 protein of an unannotated phage phrog_962 holin lysis 1 23419 23856
YP_240623.1 NC_007062_p19 protein of an unannotated phage phrog_287 minor tail protein tail 1 15080 16978
YP_240645.1 NC_007062_p38 protein of an unannotated phage phrog_5920 unknown function unknown function 1 32376 32585
YP_240640.1 NC_007062_p33 protein of an unannotated phage phrog_5375 unknown function unknown function -1 29897 30388
YP_240617.1 NC_007062_p12 protein of an unannotated phage phrog_176 tail terminator connector 1 7172 7609
YP_240663.1 NC_007062_p55 protein of an unannotated phage phrog_266 unknown function unknown function 1 39664 39912