| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_007062 |
Definition |
Staphylococcus phage 52A, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus. |
DB of origin |
REFSEQ |
Length |
41690 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
60 |
%GC |
35.53 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_240664.1 | NC_007062_p56 | protein of an unannotated phage | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 39887 | 40414 |
| YP_240604.1 | NC_007062_p1 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 462 | 629 |
| YP_001551740.1 | NC_007062_p15 | protein of an unannotated phage | phrog_1404 | tail protein | tail | 1 | 8733 | 9074 |
| YP_240631.1 | NC_007062_p25 | protein of an unannotated phage | phrog_1125 | tail fiber protein | tail | 1 | 21725 | 22963 |
| YP_240667.1 | NC_007062_p59 | protein of an unannotated phage | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 40896 | 41069 |
| YP_240613.1 | NC_007062_p9 | protein of an unannotated phage | phrog_1161 | head-tail adaptor | connector | 1 | 6117 | 6431 |
| YP_240661.1 | NC_007062_p53 | protein of an unannotated phage | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 39039 | 39401 |
| YP_240649.1 | NC_007062_p41 | protein of an unannotated phage | phrog_401 | unknown function | unknown function | 1 | 33175 | 33435 |
| YP_240621.1 | NC_007062_p17 | protein of an unannotated phage | phrog_33 | distal tail protein Dit | tail | 1 | 12235 | 13170 |
| YP_240612.1 | NC_007062_p8 | protein of an unannotated phage | phrog_390 | Arc-like repressor | transcription regulation | 1 | 5791 | 6117 |
| YP_240627.1 | NC_007062_p21 | protein of an unannotated phage | phrog_300 | tail fiber protein | tail | 1 | 18801 | 19178 |
| YP_240614.1 | NC_007062_p10 | protein of an unannotated phage | phrog_25 | head closure Hc1 | connector | 1 | 6424 | 6759 |
| YP_240618.1 | NC_007062_p13 | protein of an unannotated phage | phrog_238 | major tail protein | tail | 1 | 7596 | 8156 |
| YP_240644.1 | NC_007062_p37 | protein of an unannotated phage | phrog_463 | anti-repressor | transcription regulation | 1 | 31626 | 32351 |
| YP_240656.1 | NC_007062_p48 | protein of an unannotated phage | phrog_809 | transcriptional regulator | transcription regulation | 1 | 37617 | 37778 |
| YP_240638.1 | NC_007062_p31 | protein of an unannotated phage | phrog_1 | integrase | integration and excision | -1 | 28124 | 29329 |
| YP_240611.1 | NC_007062_p7 | protein of an unannotated phage | phrog_422 | major head protein | head and packaging | 1 | 4815 | 5774 |
| YP_240610.1 | NC_007062_p6 | protein of an unannotated phage | phrog_38668 | unknown function | unknown function | 1 | 4676 | 4798 |
| YP_240632.1 | NC_007062_p26 | protein of an unannotated phage | phrog_1262 | unknown function | unknown function | 1 | 22968 | 23363 |
| YP_240605.1 | NC_007062_p2 | protein of an unannotated phage | phrog_2 | terminase large subunit | head and packaging | 1 | 622 | 1830 |
| YP_240652.1 | NC_007062_p44 | protein of an unannotated phage | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 34794 | 35348 |
| YP_240639.1 | NC_007062_p32 | protein of an unannotated phage | phrog_4037 | unknown function | unknown function | -1 | 29393 | 29893 |
| YP_240643.1 | NC_007062_p36 | protein of an unannotated phage | phrog_3 | transcriptional repressor | transcription regulation | 1 | 31378 | 31587 |
| YP_240665.1 | NC_007062_p57 | protein of an unannotated phage | phrog_2027 | unknown function | unknown function | 1 | 40451 | 40696 |
| YP_240662.1 | NC_007062_p54 | protein of an unannotated phage | phrog_258 | virulence associated | other | 1 | 39402 | 39650 |
| YP_240625.1 | NC_007062_p20 | protein of an unannotated phage | phrog_257 | minor tail protein | tail | 1 | 16978 | 18801 |
| YP_240615.1 | NC_007062_p11 | protein of an unannotated phage | phrog_5 | tail completion or Neck1 protein | connector | 1 | 6809 | 7159 |
| YP_240629.1 | NC_007062_p23 | protein of an unannotated phage | phrog_276 | unknown function | unknown function | 1 | 19402 | 19701 |
| YP_240606.1 | NC_007062_p3 | protein of an unannotated phage | phrog_64 | portal protein | head and packaging | 1 | 1784 | 3262 |
| YP_240609.1 | NC_007062_p5 | protein of an unannotated phage | phrog_194 | head scaffolding protein | head and packaging | 1 | 4279 | 4803 |
| YP_240636.1 | NC_007062_p29 | protein of an unannotated phage | phrog_3162 | unknown function | unknown function | 1 | 26059 | 26853 |
| YP_240660.1 | NC_007062_p52 | protein of an unannotated phage | phrog_299 | unknown function | unknown function | 1 | 38853 | 39038 |
| YP_240648.1 | NC_007062_p40 | protein of an unannotated phage | phrog_2182 | unknown function | unknown function | 1 | 32853 | 33170 |
| YP_240634.1 | NC_007062_p28 | protein of an unannotated phage | phrog_635 | endolysin | lysis | 1 | 23837 | 25282 |
| YP_240630.1 | NC_007062_p24 | protein of an unannotated phage | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 19838 | 21712 |
| YP_240654.1 | NC_007062_p46 | protein of an unannotated phage | phrog_1163 | unknown function | unknown function | 1 | 36025 | 36840 |
| YP_240646.1 | NC_007062_p39 | protein of an unannotated phage | phrog_369 | unknown function | unknown function | 1 | 32599 | 32760 |
| YP_240607.1 | NC_007062_p4 | protein of an unannotated phage | phrog_115 | minor head protein | head and packaging | 1 | 3201 | 4181 |
| YP_240651.1 | NC_007062_p43 | protein of an unannotated phage | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 33985 | 34764 |
| YP_240620.1 | NC_007062_p16 | protein of an unannotated phage | phrog_58 | tail length tape measure protein | tail | 1 | 9077 | 12220 |
| YP_240628.1 | NC_007062_p22 | protein of an unannotated phage | phrog_134 | unknown function | unknown function | 1 | 19179 | 19361 |
| YP_240659.1 | NC_007062_p51 | protein of an unannotated phage | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 38444 | 38848 |
| YP_240622.1 | NC_007062_p18 | protein of an unannotated phage | phrog_663 | minor head protein | head and packaging | 1 | 13181 | 15067 |
| YP_240655.1 | NC_007062_p47 | protein of an unannotated phage | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 36850 | 37623 |
| YP_240619.1 | NC_007062_p14 | protein of an unannotated phage | phrog_183 | tail chaperone protein | tail | 1 | 8218 | 8712 |
| YP_240668.1 | NC_007062_p60 | protein of an unannotated phage | phrog_1058 | unknown function | unknown function | 1 | 41070 | 41471 |
| YP_240642.1 | NC_007062_p35 | protein of an unannotated phage | phrog_8 | transcriptional regulator | transcription regulation | -1 | 30937 | 31215 |
| YP_240641.1 | NC_007062_p34 | protein of an unannotated phage | phrog_87 | metallo-protease | other | -1 | 30409 | 30867 |
| YP_240657.1 | NC_007062_p49 | protein of an unannotated phage | phrog_433 | unknown function | unknown function | 1 | 37791 | 38012 |
| YP_240637.1 | NC_007062_p30 | protein of an unannotated phage | phrog_7610 | unknown function | unknown function | 1 | 26860 | 27597 |
| YP_240666.1 | NC_007062_p58 | protein of an unannotated phage | phrog_278 | transcriptional regulator | transcription regulation | 1 | 40693 | 40899 |
| YP_240650.1 | NC_007062_p42 | protein of an unannotated phage | phrog_2205 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 33448 | 33984 |
| YP_240653.1 | NC_007062_p45 | protein of an unannotated phage | phrog_398 | unknown function | unknown function | 1 | 35361 | 36053 |
| YP_240658.1 | NC_007062_p50 | protein of an unannotated phage | phrog_111 | DNA methyltransferase | other | 1 | 38022 | 38447 |
| YP_240633.1 | NC_007062_p27 | protein of an unannotated phage | phrog_962 | holin | lysis | 1 | 23419 | 23856 |
| YP_240623.1 | NC_007062_p19 | protein of an unannotated phage | phrog_287 | minor tail protein | tail | 1 | 15080 | 16978 |
| YP_240645.1 | NC_007062_p38 | protein of an unannotated phage | phrog_5920 | unknown function | unknown function | 1 | 32376 | 32585 |
| YP_240640.1 | NC_007062_p33 | protein of an unannotated phage | phrog_5375 | unknown function | unknown function | -1 | 29897 | 30388 |
| YP_240617.1 | NC_007062_p12 | protein of an unannotated phage | phrog_176 | tail terminator | connector | 1 | 7172 | 7609 |
| YP_240663.1 | NC_007062_p55 | protein of an unannotated phage | phrog_266 | unknown function | unknown function | 1 | 39664 | 39912 |