| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_007063 |
Definition |
Staphylococcus phage 88, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus. |
DB of origin |
REFSEQ |
Length |
43231 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
66 |
%GC |
35.46 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_240715.1 | NC_007063_p41 | protein of an unannotated phage | phrog_946 | unknown function | unknown function | 1 | 32295 | 32516 |
| YP_240711.1 | NC_007063_p38 | protein of an unannotated phage | phrog_989 | unknown function | unknown function | 1 | 31557 | 31778 |
| YP_240690.1 | NC_007063_p19 | protein of an unannotated phage | phrog_257 | minor tail protein | tail | 1 | 16793 | 18616 |
| YP_240699.1 | NC_007063_p27 | protein of an unannotated phage | phrog_635 | endolysin | lysis | 1 | 23647 | 25092 |
| YP_240687.1 | NC_007063_p16 | protein of an unannotated phage | phrog_33 | distal tail protein Dit | tail | 1 | 12050 | 12985 |
| YP_240705.1 | NC_007063_p32 | protein of an unannotated phage | phrog_87 | metallo-protease | other | -1 | 28902 | 29360 |
| YP_240677.1 | NC_007063_p7 | protein of an unannotated phage | phrog_390 | Arc-like repressor | transcription regulation | 1 | 5780 | 6106 |
| YP_240739.1 | NC_007063_p65 | protein of an unannotated phage | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 42455 | 42628 |
| YP_240683.1 | NC_007063_p12 | protein of an unannotated phage | phrog_238 | major tail protein | tail | 1 | 7585 | 8145 |
| YP_240721.1 | NC_007063_p47 | protein of an unannotated phage | phrog_2232 | unknown function | unknown function | -1 | 34900 | 35757 |
| YP_240740.1 | NC_007063_p66 | protein of an unannotated phage | phrog_1058 | unknown function | unknown function | 1 | 42629 | 43030 |
| YP_240702.1 | NC_007063_p29 | protein of an unannotated phage | phrog_16483 | unknown function | unknown function | 1 | 26065 | 26520 |
| YP_240724.1 | NC_007063_p50 | protein of an unannotated phage | phrog_809 | transcriptional regulator | transcription regulation | 1 | 37375 | 37536 |
| YP_240723.1 | NC_007063_p49 | protein of an unannotated phage | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 36602 | 37381 |
| YP_240693.1 | NC_007063_p21 | protein of an unannotated phage | phrog_134 | unknown function | unknown function | 1 | 18994 | 19170 |
| YP_240738.1 | NC_007063_p64 | protein of an unannotated phage | phrog_301 | secreted protein | other | 1 | 42069 | 42458 |
| YP_240671.1 | NC_007063_p2 | protein of an unannotated phage | phrog_2 | terminase large subunit | head and packaging | 1 | 615 | 1880 |
| YP_240672.1 | NC_007063_p3 | protein of an unannotated phage | phrog_64 | portal protein | head and packaging | 1 | 1881 | 3305 |
| YP_240722.1 | NC_007063_p48 | protein of an unannotated phage | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 35822 | 36592 |
| YP_240732.1 | NC_007063_p58 | protein of an unannotated phage | phrog_98 | unknown function | unknown function | 1 | 40080 | 40427 |
| YP_240704.1 | NC_007063_p31 | protein of an unannotated phage | phrog_5610 | unknown function | unknown function | -1 | 27954 | 28883 |
| YP_240706.1 | NC_007063_p33 | protein of an unannotated phage | phrog_8 | transcriptional regulator | transcription regulation | -1 | 29382 | 29696 |
| YP_240675.1 | NC_007063_p5 | protein of an unannotated phage | phrog_194 | head scaffolding protein | head and packaging | 1 | 4322 | 4918 |
| YP_240694.1 | NC_007063_p22 | protein of an unannotated phage | phrog_276 | unknown function | unknown function | 1 | 19211 | 19510 |
| YP_240710.1 | NC_007063_p37 | protein of an unannotated phage | phrog_2366 | unknown function | unknown function | -1 | 31277 | 31486 |
| YP_240736.1 | NC_007063_p62 | protein of an unannotated phage | phrog_2334 | transcriptional regulator | transcription regulation | 1 | 41563 | 41850 |
| YP_240717.1 | NC_007063_p43 | protein of an unannotated phage | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 33132 | 33557 |
| YP_240714.1 | NC_007063_p40 | protein of an unannotated phage | phrog_401 | unknown function | unknown function | 1 | 32025 | 32285 |
| YP_240718.1 | NC_007063_p44 | protein of an unannotated phage | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 33568 | 34119 |
| YP_240726.1 | NC_007063_p52 | protein of an unannotated phage | phrog_111 | DNA methyltransferase | other | 1 | 37780 | 38205 |
| YP_240716.1 | NC_007063_p42 | protein of an unannotated phage | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 32509 | 33132 |
| YP_240719.1 | NC_007063_p45 | protein of an unannotated phage | phrog_398 | unknown function | unknown function | 1 | 34120 | 34794 |
| YP_240692.1 | NC_007063_p20 | protein of an unannotated phage | phrog_300 | tail fiber protein | tail | 1 | 18616 | 18993 |
| YP_240676.1 | NC_007063_p6 | protein of an unannotated phage | phrog_544 | major head protein | head and packaging | 1 | 4939 | 5763 |
| YP_240678.1 | NC_007063_p8 | protein of an unannotated phage | phrog_1161 | head-tail adaptor | connector | 1 | 6106 | 6420 |
| YP_240735.1 | NC_007063_p61 | protein of an unannotated phage | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 40966 | 41526 |
| YP_240698.1 | NC_007063_p26 | protein of an unannotated phage | phrog_962 | holin | lysis | 1 | 23229 | 23666 |
| YP_240725.1 | NC_007063_p51 | protein of an unannotated phage | phrog_433 | unknown function | unknown function | 1 | 37549 | 37770 |
| YP_240701.1 | NC_007063_p28 | protein of an unannotated phage | phrog_21665 | unknown function | unknown function | 1 | 25481 | 26068 |
| YP_240720.1 | NC_007063_p46 | protein of an unannotated phage | phrog_10049 | unknown function | unknown function | 1 | 34791 | 34907 |
| YP_240729.1 | NC_007063_p55 | protein of an unannotated phage | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 38797 | 39420 |
| YP_240734.1 | NC_007063_p60 | protein of an unannotated phage | phrog_266 | unknown function | unknown function | 1 | 40725 | 40973 |
| YP_240679.1 | NC_007063_p9 | protein of an unannotated phage | phrog_25 | head closure Hc1 | connector | 1 | 6413 | 6748 |
| YP_240689.1 | NC_007063_p18 | protein of an unannotated phage | phrog_287 | minor tail protein | tail | 1 | 14895 | 16793 |
| YP_240685.1 | NC_007063_p14 | protein of an unannotated phage | phrog_1404 | tail protein | tail | 1 | 8722 | 9063 |
| YP_240673.1 | NC_007063_p4 | protein of an unannotated phage | phrog_115 | minor head protein | head and packaging | 1 | 3262 | 4224 |
| YP_240712.1 | NC_007063_p39 | protein of an unannotated phage | phrog_369 | unknown function | unknown function | 1 | 31771 | 31932 |
| YP_240731.1 | NC_007063_p57 | protein of an unannotated phage | phrog_467 | unknown function | unknown function | 1 | 39682 | 40083 |
| YP_240728.1 | NC_007063_p54 | protein of an unannotated phage | phrog_299 | unknown function | unknown function | 1 | 38611 | 38796 |
| YP_240730.1 | NC_007063_p56 | protein of an unannotated phage | phrog_258 | virulence associated | other | 1 | 39421 | 39669 |
| YP_240733.1 | NC_007063_p59 | protein of an unannotated phage | phrog_1034 | unknown function | unknown function | 1 | 40424 | 40732 |
| YP_240727.1 | NC_007063_p53 | protein of an unannotated phage | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 38202 | 38606 |
| YP_240688.1 | NC_007063_p17 | protein of an unannotated phage | phrog_663 | minor head protein | head and packaging | 1 | 12996 | 14882 |
| YP_240697.1 | NC_007063_p25 | protein of an unannotated phage | phrog_1262 | unknown function | unknown function | 1 | 22778 | 23173 |
| YP_240709.1 | NC_007063_p36 | protein of an unannotated phage | phrog_1263 | unknown function | unknown function | 1 | 31144 | 31287 |
| YP_240703.1 | NC_007063_p30 | protein of an unannotated phage | phrog_1 | integrase | integration and excision | -1 | 26846 | 27892 |
| YP_240695.1 | NC_007063_p23 | protein of an unannotated phage | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 19647 | 21521 |
| YP_240707.1 | NC_007063_p34 | protein of an unannotated phage | phrog_3 | transcriptional repressor | transcription regulation | 1 | 29849 | 30061 |
| YP_240669.1 | NC_007063_p1 | protein of an unannotated phage | phrog_51 | terminase small subunit | head and packaging | 1 | 143 | 631 |
| YP_240708.1 | NC_007063_p35 | protein of an unannotated phage | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 30138 | 30902 |
| YP_240686.1 | NC_007063_p15 | protein of an unannotated phage | phrog_58 | tail length tape measure protein | tail | 1 | 9066 | 12035 |
| YP_240682.1 | NC_007063_p11 | protein of an unannotated phage | phrog_176 | tail terminator | connector | 1 | 7161 | 7598 |
| YP_240696.1 | NC_007063_p24 | protein of an unannotated phage | phrog_1125 | tail fiber protein | tail | 1 | 21534 | 22772 |
| YP_240737.1 | NC_007063_p63 | protein of an unannotated phage | phrog_555 | unknown function | unknown function | 1 | 41843 | 42079 |
| YP_240680.1 | NC_007063_p10 | protein of an unannotated phage | phrog_5 | tail completion or Neck1 protein | connector | 1 | 6735 | 7148 |
| YP_240684.1 | NC_007063_p13 | protein of an unannotated phage | phrog_183 | tail chaperone protein | tail | 1 | 8207 | 8701 |