Genomic map of Staphylococcus virus 88 (NC_007063)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_007063
Definition
Staphylococcus phage 88, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus.
DB of origin
REFSEQ
Length
43231
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
66
%GC
35.46
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_240715.1 NC_007063_p41 protein of an unannotated phage phrog_946 unknown function unknown function 1 32295 32516
YP_240711.1 NC_007063_p38 protein of an unannotated phage phrog_989 unknown function unknown function 1 31557 31778
YP_240690.1 NC_007063_p19 protein of an unannotated phage phrog_257 minor tail protein tail 1 16793 18616
YP_240699.1 NC_007063_p27 protein of an unannotated phage phrog_635 endolysin lysis 1 23647 25092
YP_240687.1 NC_007063_p16 protein of an unannotated phage phrog_33 distal tail protein Dit tail 1 12050 12985
YP_240705.1 NC_007063_p32 protein of an unannotated phage phrog_87 metallo-protease other -1 28902 29360
YP_240677.1 NC_007063_p7 protein of an unannotated phage phrog_390 Arc-like repressor transcription regulation 1 5780 6106
YP_240739.1 NC_007063_p65 protein of an unannotated phage phrog_152 RinB-like transcriptional activator transcription regulation 1 42455 42628
YP_240683.1 NC_007063_p12 protein of an unannotated phage phrog_238 major tail protein tail 1 7585 8145
YP_240721.1 NC_007063_p47 protein of an unannotated phage phrog_2232 unknown function unknown function -1 34900 35757
YP_240740.1 NC_007063_p66 protein of an unannotated phage phrog_1058 unknown function unknown function 1 42629 43030
YP_240702.1 NC_007063_p29 protein of an unannotated phage phrog_16483 unknown function unknown function 1 26065 26520
YP_240724.1 NC_007063_p50 protein of an unannotated phage phrog_809 transcriptional regulator transcription regulation 1 37375 37536
YP_240723.1 NC_007063_p49 protein of an unannotated phage phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 36602 37381
YP_240693.1 NC_007063_p21 protein of an unannotated phage phrog_134 unknown function unknown function 1 18994 19170
YP_240738.1 NC_007063_p64 protein of an unannotated phage phrog_301 secreted protein other 1 42069 42458
YP_240671.1 NC_007063_p2 protein of an unannotated phage phrog_2 terminase large subunit head and packaging 1 615 1880
YP_240672.1 NC_007063_p3 protein of an unannotated phage phrog_64 portal protein head and packaging 1 1881 3305
YP_240722.1 NC_007063_p48 protein of an unannotated phage phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 1 35822 36592
YP_240732.1 NC_007063_p58 protein of an unannotated phage phrog_98 unknown function unknown function 1 40080 40427
YP_240704.1 NC_007063_p31 protein of an unannotated phage phrog_5610 unknown function unknown function -1 27954 28883
YP_240706.1 NC_007063_p33 protein of an unannotated phage phrog_8 transcriptional regulator transcription regulation -1 29382 29696
YP_240675.1 NC_007063_p5 protein of an unannotated phage phrog_194 head scaffolding protein head and packaging 1 4322 4918
YP_240694.1 NC_007063_p22 protein of an unannotated phage phrog_276 unknown function unknown function 1 19211 19510
YP_240710.1 NC_007063_p37 protein of an unannotated phage phrog_2366 unknown function unknown function -1 31277 31486
YP_240736.1 NC_007063_p62 protein of an unannotated phage phrog_2334 transcriptional regulator transcription regulation 1 41563 41850
YP_240717.1 NC_007063_p43 protein of an unannotated phage phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 33132 33557
YP_240714.1 NC_007063_p40 protein of an unannotated phage phrog_401 unknown function unknown function 1 32025 32285
YP_240718.1 NC_007063_p44 protein of an unannotated phage phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 33568 34119
YP_240726.1 NC_007063_p52 protein of an unannotated phage phrog_111 DNA methyltransferase other 1 37780 38205
YP_240716.1 NC_007063_p42 protein of an unannotated phage phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 32509 33132
YP_240719.1 NC_007063_p45 protein of an unannotated phage phrog_398 unknown function unknown function 1 34120 34794
YP_240692.1 NC_007063_p20 protein of an unannotated phage phrog_300 tail fiber protein tail 1 18616 18993
YP_240676.1 NC_007063_p6 protein of an unannotated phage phrog_544 major head protein head and packaging 1 4939 5763
YP_240678.1 NC_007063_p8 protein of an unannotated phage phrog_1161 head-tail adaptor connector 1 6106 6420
YP_240735.1 NC_007063_p61 protein of an unannotated phage phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 40966 41526
YP_240698.1 NC_007063_p26 protein of an unannotated phage phrog_962 holin lysis 1 23229 23666
YP_240725.1 NC_007063_p51 protein of an unannotated phage phrog_433 unknown function unknown function 1 37549 37770
YP_240701.1 NC_007063_p28 protein of an unannotated phage phrog_21665 unknown function unknown function 1 25481 26068
YP_240720.1 NC_007063_p46 protein of an unannotated phage phrog_10049 unknown function unknown function 1 34791 34907
YP_240729.1 NC_007063_p55 protein of an unannotated phage phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 38797 39420
YP_240734.1 NC_007063_p60 protein of an unannotated phage phrog_266 unknown function unknown function 1 40725 40973
YP_240679.1 NC_007063_p9 protein of an unannotated phage phrog_25 head closure Hc1 connector 1 6413 6748
YP_240689.1 NC_007063_p18 protein of an unannotated phage phrog_287 minor tail protein tail 1 14895 16793
YP_240685.1 NC_007063_p14 protein of an unannotated phage phrog_1404 tail protein tail 1 8722 9063
YP_240673.1 NC_007063_p4 protein of an unannotated phage phrog_115 minor head protein head and packaging 1 3262 4224
YP_240712.1 NC_007063_p39 protein of an unannotated phage phrog_369 unknown function unknown function 1 31771 31932
YP_240731.1 NC_007063_p57 protein of an unannotated phage phrog_467 unknown function unknown function 1 39682 40083
YP_240728.1 NC_007063_p54 protein of an unannotated phage phrog_299 unknown function unknown function 1 38611 38796
YP_240730.1 NC_007063_p56 protein of an unannotated phage phrog_258 virulence associated other 1 39421 39669
YP_240733.1 NC_007063_p59 protein of an unannotated phage phrog_1034 unknown function unknown function 1 40424 40732
YP_240727.1 NC_007063_p53 protein of an unannotated phage phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 38202 38606
YP_240688.1 NC_007063_p17 protein of an unannotated phage phrog_663 minor head protein head and packaging 1 12996 14882
YP_240697.1 NC_007063_p25 protein of an unannotated phage phrog_1262 unknown function unknown function 1 22778 23173
YP_240709.1 NC_007063_p36 protein of an unannotated phage phrog_1263 unknown function unknown function 1 31144 31287
YP_240703.1 NC_007063_p30 protein of an unannotated phage phrog_1 integrase integration and excision -1 26846 27892
YP_240695.1 NC_007063_p23 protein of an unannotated phage phrog_759 tail associated cell-wall hydrolase other 1 19647 21521
YP_240707.1 NC_007063_p34 protein of an unannotated phage phrog_3 transcriptional repressor transcription regulation 1 29849 30061
YP_240669.1 NC_007063_p1 protein of an unannotated phage phrog_51 terminase small subunit head and packaging 1 143 631
YP_240708.1 NC_007063_p35 protein of an unannotated phage phrog_130 anti-repressor Ant transcription regulation 1 30138 30902
YP_240686.1 NC_007063_p15 protein of an unannotated phage phrog_58 tail length tape measure protein tail 1 9066 12035
YP_240682.1 NC_007063_p11 protein of an unannotated phage phrog_176 tail terminator connector 1 7161 7598
YP_240696.1 NC_007063_p24 protein of an unannotated phage phrog_1125 tail fiber protein tail 1 21534 22772
YP_240737.1 NC_007063_p63 protein of an unannotated phage phrog_555 unknown function unknown function 1 41843 42079
YP_240680.1 NC_007063_p10 protein of an unannotated phage phrog_5 tail completion or Neck1 protein connector 1 6735 7148
YP_240684.1 NC_007063_p13 protein of an unannotated phage phrog_183 tail chaperone protein tail 1 8207 8701