| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_007065 |
Definition |
Staphylococcus phage X2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus. |
DB of origin |
REFSEQ |
Length |
43440 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
77 |
%GC |
35.95 |
Number of singletons |
6 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_240867.1 | NC_007065_p53 | protein of an unannotated phage | phrog_13915 | unknown function | unknown function | -1 | 33448 | 33558 |
| YP_240858.1 | NC_007065_p44 | protein of an unannotated phage | phrog_4 | transcriptional repressor | transcription regulation | -1 | 30223 | 30825 |
| YP_240832.1 | NC_007065_p18 | protein of an unannotated phage | phrog_1404 | tail protein | tail | 1 | 8539 | 8880 |
| YP_240850.1 | NC_007065_p36 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 25858 | 26013 |
| YP_240819.1 | NC_007065_p5 | protein of an unannotated phage | phrog_32331 | unknown function | unknown function | -1 | 3814 | 4083 |
| YP_240876.1 | NC_007065_p62 | protein of an unannotated phage | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 37332 | 38573 |
| YP_240840.1 | NC_007065_p26 | protein of an unannotated phage | phrog_300 | tail fiber protein | tail | 1 | 18433 | 18810 |
| YP_240872.1 | NC_007065_p58 | protein of an unannotated phage | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 35115 | 35534 |
| YP_240843.1 | NC_007065_p29 | protein of an unannotated phage | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 19475 | 21349 |
| YP_240828.1 | NC_007065_p14 | protein of an unannotated phage | phrog_31766 | unknown function | unknown function | 1 | 6751 | 6927 |
| YP_240875.1 | NC_007065_p61 | protein of an unannotated phage | phrog_2289 | helicase loader | DNA, RNA and nucleotide metabolism | 1 | 36979 | 37335 |
| YP_240859.1 | NC_007065_p45 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 30590 | 30742 |
| YP_240826.1 | NC_007065_p12 | protein of an unannotated phage | phrog_25 | head closure Hc1 | connector | 1 | 6230 | 6565 |
| YP_240822.1 | NC_007065_p8 | protein of an unannotated phage | phrog_544 | major head protein | head and packaging | 1 | 4768 | 5580 |
| YP_240890.1 | NC_007065_p76 | protein of an unannotated phage | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 42608 | 42781 |
| YP_240861.1 | NC_007065_p47 | protein of an unannotated phage | phrog_3882 | unknown function | unknown function | 1 | 31252 | 31419 |
| YP_240846.1 | NC_007065_p32 | protein of an unannotated phage | phrog_962 | holin | lysis | 1 | 23425 | 23862 |
| YP_240853.1 | NC_007065_p39 | protein of an unannotated phage | phrog_419 | unknown function | unknown function | 1 | 28316 | 28513 |
| YP_240831.1 | NC_007065_p17 | protein of an unannotated phage | phrog_183 | tail chaperone protein | tail | 1 | 8024 | 8518 |
| YP_240857.1 | NC_007065_p43 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 30123 | 30284 |
| YP_240883.1 | NC_007065_p69 | protein of an unannotated phage | phrog_258 | virulence associated | other | 1 | 40408 | 40650 |
| YP_240866.1 | NC_007065_p52 | protein of an unannotated phage | phrog_369 | unknown function | unknown function | 1 | 33428 | 33595 |
| YP_240848.1 | NC_007065_p34 | protein of an unannotated phage | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 24514 | 25059 |
| YP_240855.1 | NC_007065_p41 | protein of an unannotated phage | phrog_7395 | unknown function | unknown function | -1 | 28911 | 29348 |
| YP_240852.1 | NC_007065_p38 | protein of an unannotated phage | phrog_95 | integrase | integration and excision | -1 | 26822 | 28207 |
| YP_240864.1 | NC_007065_p50 | protein of an unannotated phage | phrog_463 | anti-repressor | transcription regulation | 1 | 32585 | 33292 |
| YP_240835.1 | NC_007065_p21 | protein of an unannotated phage | phrog_663 | minor head protein | head and packaging | 1 | 12813 | 14699 |
| YP_240827.1 | NC_007065_p13 | protein of an unannotated phage | phrog_5 | tail completion or Neck1 protein | connector | 1 | 6615 | 6965 |
| YP_240845.1 | NC_007065_p31 | protein of an unannotated phage | phrog_18372 | tail fiber protein | tail | 1 | 21362 | 23374 |
| YP_240842.1 | NC_007065_p28 | protein of an unannotated phage | phrog_276 | unknown function | unknown function | 1 | 19033 | 19338 |
| YP_240823.1 | NC_007065_p9 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 5339 | 5521 |
| YP_240849.1 | NC_007065_p35 | protein of an unannotated phage | phrog_833 | endolysin | lysis | 1 | 25590 | 26222 |
| YP_240860.1 | NC_007065_p46 | protein of an unannotated phage | phrog_3 | transcriptional repressor | transcription regulation | 1 | 31021 | 31236 |
| YP_240856.1 | NC_007065_p42 | protein of an unannotated phage | phrog_888 | unknown function | unknown function | -1 | 29380 | 30105 |
| YP_240868.1 | NC_007065_p54 | protein of an unannotated phage | phrog_9362 | unknown function | unknown function | 1 | 33596 | 33916 |
| YP_240882.1 | NC_007065_p68 | protein of an unannotated phage | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 40048 | 40404 |
| YP_240871.1 | NC_007065_p57 | protein of an unannotated phage | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 34492 | 35115 |
| YP_240825.1 | NC_007065_p11 | protein of an unannotated phage | phrog_1161 | head-tail adaptor | connector | 1 | 5923 | 6237 |
| YP_240891.1 | NC_007065_p77 | protein of an unannotated phage | phrog_1058 | unknown function | unknown function | 1 | 42782 | 43183 |
| YP_240830.1 | NC_007065_p16 | protein of an unannotated phage | phrog_238 | major tail protein | tail | 1 | 7402 | 7962 |
| YP_240815.1 | NC_007065_p1 | protein of an unannotated phage | phrog_2538 | terminase small subunit | head and packaging | 1 | 89 | 469 |
| YP_240820.1 | NC_007065_p6 | protein of an unannotated phage | phrog_28643 | unknown function | unknown function | 1 | 3902 | 4009 |
| YP_240838.1 | NC_007065_p24 | protein of an unannotated phage | phrog_257 | minor tail protein | tail | 1 | 16610 | 18433 |
| YP_240847.1 | NC_007065_p33 | protein of an unannotated phage | phrog_7887 | endolysin | lysis | 1 | 23843 | 24484 |
| YP_240885.1 | NC_007065_p71 | protein of an unannotated phage | phrog_1034 | unknown function | unknown function | 1 | 41071 | 41346 |
| YP_240818.1 | NC_007065_p4 | protein of an unannotated phage | phrog_115 | minor head protein | head and packaging | 1 | 3100 | 4062 |
| YP_240816.1 | NC_007065_p2 | protein of an unannotated phage | phrog_2 | terminase large subunit | head and packaging | 1 | 453 | 1718 |
| YP_240886.1 | NC_007065_p72 | protein of an unannotated phage | phrog_266 | unknown function | unknown function | 1 | 41339 | 41587 |
| YP_240879.1 | NC_007065_p65 | protein of an unannotated phage | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 39020 | 39424 |
| YP_240874.1 | NC_007065_p60 | protein of an unannotated phage | phrog_6493 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 36215 | 36979 |
| YP_240880.1 | NC_007065_p66 | protein of an unannotated phage | phrog_299 | unknown function | unknown function | 1 | 39429 | 39614 |
| YP_240844.1 | NC_007065_p30 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 20880 | 20981 |
| YP_240888.1 | NC_007065_p74 | protein of an unannotated phage | phrog_278 | transcriptional regulator | transcription regulation | 1 | 42177 | 42395 |
| YP_240873.1 | NC_007065_p59 | protein of an unannotated phage | phrog_398 | unknown function | unknown function | 1 | 35548 | 36222 |
| YP_240841.1 | NC_007065_p27 | protein of an unannotated phage | phrog_134 | unknown function | unknown function | 1 | 18811 | 18993 |
| YP_240865.1 | NC_007065_p51 | protein of an unannotated phage | phrog_3785 | unknown function | unknown function | 1 | 33307 | 33444 |
| YP_240862.1 | NC_007065_p48 | protein of an unannotated phage | phrog_4989 | unknown function | unknown function | -1 | 31470 | 31952 |
| YP_240878.1 | NC_007065_p64 | protein of an unannotated phage | phrog_433 | unknown function | unknown function | 1 | 38788 | 39009 |
| YP_240889.1 | NC_007065_p75 | protein of an unannotated phage | phrog_555 | unknown function | unknown function | 1 | 42379 | 42615 |
| YP_240836.1 | NC_007065_p22 | protein of an unannotated phage | phrog_287 | minor tail protein | tail | 1 | 14712 | 16610 |
| YP_240851.1 | NC_007065_p37 | protein of an unannotated phage | phrog_20463 | unknown function | unknown function | -1 | 26299 | 26400 |
| YP_240821.1 | NC_007065_p7 | protein of an unannotated phage | phrog_194 | head scaffolding protein | head and packaging | 1 | 4160 | 4750 |
| YP_240887.1 | NC_007065_p73 | protein of an unannotated phage | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 41580 | 42140 |
| YP_240829.1 | NC_007065_p15 | protein of an unannotated phage | phrog_176 | tail terminator | connector | 1 | 6978 | 7415 |
| YP_240817.1 | NC_007065_p3 | protein of an unannotated phage | phrog_64 | portal protein | head and packaging | 1 | 1719 | 3143 |
| YP_240837.1 | NC_007065_p23 | protein of an unannotated phage | phrog_36044 | unknown function | unknown function | 1 | 15700 | 15816 |
| YP_240863.1 | NC_007065_p49 | protein of an unannotated phage | phrog_3 | transcriptional repressor | transcription regulation | 1 | 32398 | 32583 |
| YP_240877.1 | NC_007065_p63 | protein of an unannotated phage | phrog_3161 | unknown function | unknown function | 1 | 38570 | 38785 |
| YP_240881.1 | NC_007065_p67 | protein of an unannotated phage | phrog_1709 | unknown function | unknown function | 1 | 39615 | 39920 |
| YP_240854.1 | NC_007065_p40 | protein of an unannotated phage | phrog_6988 | unknown function | unknown function | -1 | 28510 | 28917 |
| YP_240824.1 | NC_007065_p10 | protein of an unannotated phage | phrog_390 | Arc-like repressor | transcription regulation | 1 | 5597 | 5923 |
| YP_240870.1 | NC_007065_p56 | protein of an unannotated phage | phrog_946 | unknown function | unknown function | 1 | 34278 | 34499 |
| YP_240884.1 | NC_007065_p70 | protein of an unannotated phage | phrog_467 | unknown function | unknown function | 1 | 40661 | 41071 |
| YP_240839.1 | NC_007065_p25 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 17907 | 18047 |
| YP_240833.1 | NC_007065_p19 | protein of an unannotated phage | phrog_58 | tail length tape measure protein | tail | 1 | 8883 | 11852 |
| YP_240869.1 | NC_007065_p55 | protein of an unannotated phage | phrog_401 | unknown function | unknown function | 1 | 34008 | 34268 |
| YP_240834.1 | NC_007065_p20 | protein of an unannotated phage | phrog_33 | distal tail protein Dit | tail | 1 | 11867 | 12802 |