| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_007149 |
Definition |
Vibriophage VP4, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Chatterjeevirus; Vibrio virus VP4. |
DB of origin |
REFSEQ |
Length |
39503 |
Host Name |
Vibrio |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
31 |
%GC |
42.61 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_249597.1 | NC_007149_p31 | DNA packaging protein B | phrog_38 | terminase large subunit | head and packaging | 1 | 37033 | 38793 |
| YP_249581.1 | NC_007149_p8 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 10777 | 12813 |
| YP_418241.1 | NC_007149_p10 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 14181 | 14378 |
| YP_418243.1 | NC_007149_p19 | Probable N-terminus of major capsid protein | singleton | unknown function | unknown function | 1 | 21624 | 21758 |
| YP_418235.1 | NC_007149_p1 | S-adenosyl-L-methionine hydrolase | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 538 | 969 |
| YP_249595.1 | NC_007149_p27 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 29862 | 33236 |
| YP_249596.1 | NC_007149_p28 | Tail fiber protein | phrog_6256 | tail fiber protein | tail | 1 | 33316 | 35598 |
| YP_249583.1 | NC_007149_p12 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 14785 | 15648 |
| YP_249592.1 | NC_007149_p24 | Internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 26509 | 27027 |
| YP_418236.1 | NC_007149_p4 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 6285 | 6968 |
| YP_418238.1 | NC_007149_p6 | hypothetical protein | phrog_5138 | unknown function | unknown function | 1 | 7807 | 8202 |
| YP_249593.1 | NC_007149_p25 | Internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 27020 | 27604 |
| YP_249590.1 | NC_007149_p21 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 22807 | 23400 |
| YP_249589.1 | NC_007149_p20 | Major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 21767 | 22741 |
| YP_249594.1 | NC_007149_p26 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 27672 | 29849 |
| YP_249584.1 | NC_007149_p13 | single-stranded DNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 15983 | 16654 |
| YP_249577.1 | NC_007149_p2 | T3/T7-like RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 1846 | 4497 |
| YP_249585.1 | NC_007149_p14 | endonuclease I | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 16654 | 17106 |
| YP_249586.1 | NC_007149_p15 | lysozyme | phrog_822 | amidase | lysis | 1 | 17106 | 17540 |
| YP_418246.1 | NC_007149_p30 | DNA packaging protein, small subunit | phrog_1351 | terminase small subunit | head and packaging | 1 | 36368 | 36601 |
| YP_418245.1 | NC_007149_p29 | type II holin | phrog_920 | holin | lysis | 1 | 35624 | 35818 |
| YP_418237.1 | NC_007149_p5 | host RNA polymerase inhibitory protein | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 7010 | 7183 |
| YP_249580.2 | NC_007149_p7 | Primase/Helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 8503 | 10212 |
| YP_249588.2 | NC_007149_p18 | capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 20653 | 21504 |
| YP_249591.1 | NC_007149_p22 | Tail tubular protein B | phrog_457 | tail protein | tail | 1 | 23412 | 25796 |
| YP_249582.1 | NC_007149_p11 | Nucleotide reductase subunit C | phrog_2294 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | 1 | 14378 | 14788 |
| YP_249587.1 | NC_007149_p17 | Head-to-tail joining protein | phrog_449 | head-tail adaptor | connector | 1 | 18976 | 20574 |
| YP_418242.1 | NC_007149_p16 | gene 6.5 homolog | phrog_1447 | unknown function | unknown function | 1 | 17702 | 17956 |
| YP_418240.1 | NC_007149_p9 | thmidine kinase | phrog_592 | thymidine kinase | other | 1 | 13498 | 13998 |
| YP_249578.1 | NC_007149_p3 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 4683 | 5663 |
| YP_418244.1 | NC_007149_p23 | deoxyribonucleoside kinase | phrog_761 | thymidylate kinase | other | 1 | 25884 | 26516 |