Genomic map of Vibriophage VP4 (NC_007149)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_007149
Definition
Vibriophage VP4, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Chatterjeevirus; Vibrio virus VP4.
DB of origin
REFSEQ
Length
39503
Host Name
Vibrio
Host domain
Bacteria
Is prophage?
undef
Number of proteins
31
%GC
42.61
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_249597.1 NC_007149_p31 DNA packaging protein B phrog_38 terminase large subunit head and packaging 1 37033 38793
YP_249581.1 NC_007149_p8 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 10777 12813
YP_418241.1 NC_007149_p10 hypothetical protein phrog_1334 unknown function unknown function 1 14181 14378
YP_418243.1 NC_007149_p19 Probable N-terminus of major capsid protein singleton unknown function unknown function 1 21624 21758
YP_418235.1 NC_007149_p1 S-adenosyl-L-methionine hydrolase phrog_2226 SAM-dependent methyltransferase other 1 538 969
YP_249595.1 NC_007149_p27 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 29862 33236
YP_249596.1 NC_007149_p28 Tail fiber protein phrog_6256 tail fiber protein tail 1 33316 35598
YP_249583.1 NC_007149_p12 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 14785 15648
YP_249592.1 NC_007149_p24 Internal virion protein A phrog_308 internal virion protein head and packaging 1 26509 27027
YP_418236.1 NC_007149_p4 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other 1 6285 6968
YP_418238.1 NC_007149_p6 hypothetical protein phrog_5138 unknown function unknown function 1 7807 8202
YP_249593.1 NC_007149_p25 Internal virion protein B phrog_805 internal virion protein head and packaging 1 27020 27604
YP_249590.1 NC_007149_p21 tail tubular protein A phrog_446 tail protein tail 1 22807 23400
YP_249589.1 NC_007149_p20 Major capsid protein phrog_267 major head protein head and packaging 1 21767 22741
YP_249594.1 NC_007149_p26 internal virion protein C phrog_1339 internal virion protein head and packaging 1 27672 29849
YP_249584.1 NC_007149_p13 single-stranded DNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 15983 16654
YP_249577.1 NC_007149_p2 T3/T7-like RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 1846 4497
YP_249585.1 NC_007149_p14 endonuclease I phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 16654 17106
YP_249586.1 NC_007149_p15 lysozyme phrog_822 amidase lysis 1 17106 17540
YP_418246.1 NC_007149_p30 DNA packaging protein, small subunit phrog_1351 terminase small subunit head and packaging 1 36368 36601
YP_418245.1 NC_007149_p29 type II holin phrog_920 holin lysis 1 35624 35818
YP_418237.1 NC_007149_p5 host RNA polymerase inhibitory protein phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 7010 7183
YP_249580.2 NC_007149_p7 Primase/Helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 8503 10212
YP_249588.2 NC_007149_p18 capsid assembly protein phrog_1052 head assembly head and packaging 1 20653 21504
YP_249591.1 NC_007149_p22 Tail tubular protein B phrog_457 tail protein tail 1 23412 25796
YP_249582.1 NC_007149_p11 Nucleotide reductase subunit C phrog_2294 ribonucleotide reductase DNA, RNA and nucleotide metabolism 1 14378 14788
YP_249587.1 NC_007149_p17 Head-to-tail joining protein phrog_449 head-tail adaptor connector 1 18976 20574
YP_418242.1 NC_007149_p16 gene 6.5 homolog phrog_1447 unknown function unknown function 1 17702 17956
YP_418240.1 NC_007149_p9 thmidine kinase phrog_592 thymidine kinase other 1 13498 13998
YP_249578.1 NC_007149_p3 ATP-dependent DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 4683 5663
YP_418244.1 NC_007149_p23 deoxyribonucleoside kinase phrog_761 thymidylate kinase other 1 25884 26516