Genomic map of Lactobacillus phage Lc-Nu (NC_007501)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_007501
Definition
Lactobacillus phage Lc-Nu, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
36466
Host Name
Lactobacillus rhamnosus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
51
%GC
44.27
Number of singletons
1
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_358774.1 NC_007501_p16 hypothetical protein phrog_4573 unknown function unknown function 1 18167 18496
YP_358809.1 NC_007501_p51 HNH nuclease phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 35932 36426
YP_358792.1 NC_007501_p34 replication protein phrog_270 replication initiation protein DNA, RNA and nucleotide metabolism 1 25909 26796
YP_358771.1 NC_007501_p13 tape measure protein phrog_167 tail length tape measure protein tail 1 8501 13069
YP_358777.1 NC_007501_p19 hypothetical protein phrog_3671 unknown function unknown function 1 19034 19243
YP_358766.1 NC_007501_p8 head-tail joining protein phrog_25 head closure Hc1 connector 1 6023 6364
YP_358805.1 NC_007501_p47 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 33664 34881
YP_358759.1 NC_007501_p1 terminase small subunit phrog_83 terminase small subunit head and packaging 1 99 566
YP_358791.1 NC_007501_p33 hypothetical protein phrog_151 transposase integration and excision 1 25574 25894
YP_358807.1 NC_007501_p49 hypothetical protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 35439 35762
YP_358790.1 NC_007501_p32 hypothetical protein phrog_22182 unknown function unknown function 1 25297 25509
YP_358770.1 NC_007501_p12 tail component phrog_1346 tail protein tail 1 7937 8287
YP_358768.1 NC_007501_p10 tail component phrog_1217 tail protein tail 1 6783 7154
YP_358789.1 NC_007501_p31 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 24617 25162
YP_358764.1 NC_007501_p6 major head protein phrog_10 major head protein head and packaging 1 4456 5625
YP_358784.1 NC_007501_p26 hypothetical protein phrog_5144 unknown function unknown function 1 22401 22604
YP_358796.1 NC_007501_p38 hypothetical protein phrog_5418 unknown function unknown function 1 28688 28942
YP_358797.1 NC_007501_p39 Holliday junction resolvase phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 28939 29352
YP_358775.1 NC_007501_p17 hypothetical protein phrog_134 unknown function unknown function 1 18493 18636
YP_358772.1 NC_007501_p14 tail component phrog_202 distal tail protein Dit tail 1 13070 15004
YP_358761.1 NC_007501_p3 hypothetical protein phrog_502 membrane protein moron, auxiliary metabolic gene and host takeover 1 2442 2615
YP_358808.1 NC_007501_p50 hypothetical protein phrog_1374 unknown function unknown function 1 35764 35928
YP_358760.1 NC_007501_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 550 2442
YP_358794.1 NC_007501_p36 hypothetical protein phrog_8182 unknown function unknown function 1 28006 28401
YP_358798.1 NC_007501_p40 methylase phrog_363 DNA methyltransferase other 1 29366 30151
YP_358786.1 NC_007501_p28 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 22830 23321
YP_358787.1 NC_007501_p29 NTP-binding protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 23331 24038
YP_358799.1 NC_007501_p41 methylase phrog_1071 DNA methyltransferase other 1 30144 30851
YP_358773.1 NC_007501_p15 host specificity protein phrog_588 tail fiber protein and host specificity tail 1 15005 18157
YP_358779.1 NC_007501_p21 lysin phrog_291 endolysin lysis 1 19693 20991
YP_358795.1 NC_007501_p37 hypothetical protein phrog_8 transcriptional regulator transcription regulation 1 28414 28701
YP_358763.1 NC_007501_p5 protease phrog_94 head maturation protease head and packaging 1 3770 4456
YP_358776.1 NC_007501_p18 holin phrog_4325 holin lysis 1 18667 19065
YP_358783.1 NC_007501_p25 hypothetical protein phrog_29333 unknown function unknown function 1 22186 22389
YP_358793.1 NC_007501_p35 DnaB-like helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 26793 28055
YP_358803.1 NC_007501_p45 hypothetical protein phrog_248 transcriptional activator transcription regulation 1 31790 32218
YP_358782.1 NC_007501_p24 antirepressor singleton unknown function unknown function 1 21890 22219
YP_358767.1 NC_007501_p9 head-tail joining protein phrog_5 tail completion or Neck1 protein connector 1 6367 6786
YP_358769.1 NC_007501_p11 major tail protein phrog_88 major tail protein tail 1 7166 7774
YP_358806.1 NC_007501_p48 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 34868 35446
YP_358801.1 NC_007501_p43 hypothetical protein phrog_7157 unknown function unknown function 1 31027 31236
YP_358778.1 NC_007501_p20 holin phrog_2609 holin lysis 1 19236 19682
YP_358762.1 NC_007501_p4 portal protein phrog_12 portal protein head and packaging 1 2622 3773
YP_358788.1 NC_007501_p30 single-stranded binding protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 24042 24596
YP_358780.1 NC_007501_p22 CI-like repressor phrog_8 transcriptional regulator transcription regulation -1 21061 21486
YP_358804.1 NC_007501_p46 methylase phrog_56 DNA methyltransferase other 1 32746 33645
YP_358800.1 NC_007501_p42 hypothetical protein phrog_5222 unknown function unknown function 1 30848 31030
YP_358802.1 NC_007501_p44 transcription regulator phrog_3 transcriptional repressor transcription regulation 1 31366 31584
YP_358765.1 NC_007501_p7 DNA packaging protein phrog_40 head-tail adaptor Ad1 connector 1 5698 6030
YP_358785.1 NC_007501_p27 hypothetical protein phrog_5205 unknown function unknown function 1 22609 22812
YP_358781.1 NC_007501_p23 Cro-like repressor phrog_3 transcriptional repressor transcription regulation 1 21648 21893