Genomic map of Escherichia virus Rtp (NC_007603)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_007603
Definition
Enterobacteria phage RTP, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Braunvirinae; Rtpvirus.
DB of origin
REFSEQ
Length
46219
Host Name
Escherichia coli
Host domain
Bacteria
Is prophage?
undef
Number of proteins
75
%GC
44.28
Number of singletons
10
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_398972.1 NC_007603_p28 hypothetical protein phrog_2716 unknown function unknown function 1 13610 13855
YP_398999.1 NC_007603_p55 hypothetical protein phrog_6031 unknown function unknown function 1 37875 38075
YP_398974.1 NC_007603_p30 conserved phage-related protein phrog_161 head closure Hc1 connector 1 14405 14776
YP_399005.1 NC_007603_p61 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 39259 40395
YP_399015.1 NC_007603_p71 hypothetical protein singleton unknown function unknown function -1 44713 44886
YP_398982.1 NC_007603_p38 minor tail protein phrog_14 minor tail protein tail 1 20251 20601
YP_399001.1 NC_007603_p57 hypothetical protein phrog_3249 unknown function unknown function 1 38293 38481
YP_399012.1 NC_007603_p68 hypothetical protein singleton unknown function unknown function -1 43963 44202
YP_399010.1 NC_007603_p66 hypothetical protein phrog_2794 unknown function unknown function -1 41854 42129
YP_399008.1 NC_007603_p64 endolysin phrog_7 endolysin lysis 1 40989 41474
YP_398965.1 NC_007603_p21 terminase large subunit phrog_38 terminase large subunit head and packaging 1 6857 8428
YP_398971.1 NC_007603_p27 hypothetical protein phrog_264 major head protein head and packaging 1 12574 13518
YP_398993.1 NC_007603_p49 single-stranded DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 30395 30826
YP_398979.1 NC_007603_p35 hypothetical protein phrog_569 tail length tape measure protein tail 1 16785 17099
YP_398954.1 NC_007603_p10 hypothetical protein singleton unknown function unknown function 1 3152 3442
YP_399019.1 NC_007603_p75 hypothetical protein singleton unknown function unknown function -1 45546 45749
YP_398946.1 NC_007603_p2 hypothetical protein singleton unknown function unknown function 1 1064 1123
YP_399011.1 NC_007603_p67 hypothetical protein phrog_2373 DNA helicase DNA, RNA and nucleotide metabolism -1 42193 43776
YP_398989.1 NC_007603_p45 phage lipoprotein phrog_4281 unknown function unknown function -1 27687 27917
YP_398956.1 NC_007603_p12 hypothetical protein phrog_1312 unknown function unknown function 1 3765 3887
YP_398959.1 NC_007603_p15 hypothetical protein phrog_303 unknown function unknown function 1 4299 4535
YP_399017.1 NC_007603_p73 hypothetical protein phrog_4448 unknown function unknown function -1 45111 45350
YP_398968.1 NC_007603_p24 phage head morphogenesis protein phrog_324 head morphogenesis head and packaging 1 10234 10866
YP_399014.1 NC_007603_p70 hypothetical protein phrog_5407 unknown function unknown function -1 44552 44713
YP_398980.1 NC_007603_p36 hypothetical protein phrog_680 tail length tape measure protein tail 1 17108 17419
YP_398970.1 NC_007603_p26 hypothetical protein phrog_1989 unknown function unknown function 1 11981 12460
YP_398952.1 NC_007603_p8 hypothetical protein singleton unknown function unknown function 1 2742 2930
YP_399003.1 NC_007603_p59 hypothetical protein phrog_2817 unknown function unknown function 1 38674 38922
YP_398986.1 NC_007603_p42 tail assembly protein phrog_32 tail assembly protein tail 1 22699 23271
YP_398981.1 NC_007603_p37 tail tape-measure protein phrog_24 tail length tape measure protein tail 1 17455 20220
YP_398985.1 NC_007603_p41 minor tail protein phrog_30 minor tail protein tail 1 21960 22718
YP_398997.1 NC_007603_p53 ATP-dependent helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 35383 37377
YP_398987.1 NC_007603_p43 tail fiber protein phrog_31 central tail fiber J tail 1 23313 26723
YP_398991.1 NC_007603_p47 exodeoxyribonuclease VIII (RecE) phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism 1 28662 29627
YP_398977.1 NC_007603_p33 major tail protein phrog_584 major tail protein tail 1 15613 16269
YP_399006.1 NC_007603_p62 hypothetical protein phrog_4788 unknown function unknown function 1 40469 40642
YP_398966.1 NC_007603_p22 hypothetical protein phrog_14592 virion structural protein head and packaging 1 8500 8856
YP_398950.1 NC_007603_p6 hypothetical protein singleton unknown function unknown function 1 2432 2524
YP_398951.1 NC_007603_p7 hypothetical protein phrog_16063 unknown function unknown function 1 2521 2745
YP_399013.1 NC_007603_p69 hypothetical protein phrog_2684 unknown function unknown function -1 44199 44552
YP_398988.1 NC_007603_p44 hypothetical protein phrog_1265 membrane protein moron, auxiliary metabolic gene and host takeover -1 26752 27687
YP_398953.1 NC_007603_p9 hypothetical protein phrog_3955 unknown function unknown function 1 2934 3080
YP_399004.1 NC_007603_p60 hypothetical protein phrog_4596 unknown function unknown function 1 38925 39176
YP_398975.1 NC_007603_p31 conserved phage-related protein phrog_169 tail completion or Neck1 protein connector 1 14769 15206
YP_398994.1 NC_007603_p50 tail fiber phrog_16586 tail fiber protein tail -1 30856 33738
YP_398957.1 NC_007603_p13 hypothetical protein phrog_22596 unknown function unknown function 1 3887 4030
YP_398949.1 NC_007603_p5 hypothetical protein phrog_2452 unknown function unknown function 1 2102 2362
YP_399009.1 NC_007603_p65 hypothetical protein phrog_1804 Rz-like spanin lysis 1 41477 41839
YP_398948.1 NC_007603_p4 polynucleotide kinase/phosphatase phrog_415 polynucleotide kinase other 1 1444 1983
YP_399018.1 NC_007603_p74 hypothetical protein phrog_9053 unknown function unknown function -1 45361 45537
YP_398973.1 NC_007603_p29 hypothetical protein phrog_302 virion structural protein head and packaging 1 14007 14405
YP_399007.1 NC_007603_p63 holin phrog_2877 holin lysis 1 40773 40988
YP_398983.1 NC_007603_p39 minor tail protein phrog_18 minor tail protein tail 1 20641 21396
YP_398947.1 NC_007603_p3 hypothetical protein phrog_6360 unknown function unknown function 1 1120 1383
YP_398969.1 NC_007603_p25 possible prohead protease phrog_530 head maturation protease head and packaging 1 10880 11968
YP_398978.1 NC_007603_p34 hypothetical protein singleton unknown function unknown function 1 16380 16766
YP_399016.1 NC_007603_p72 hypothetical protein phrog_4548 unknown function unknown function -1 44950 45114
YP_399002.1 NC_007603_p58 hypothetical protein phrog_2180 unknown function unknown function 1 38552 38677
YP_398945.1 NC_007603_p1 hypothetical protein phrog_4841 unknown function unknown function 1 546 1064
YP_398955.1 NC_007603_p11 hypothetical protein phrog_7411 unknown function unknown function 1 3534 3713
YP_398960.1 NC_007603_p16 hypothetical protein phrog_16862 unknown function unknown function 1 4997 5182
YP_398996.1 NC_007603_p52 transcriptional regulator phrog_2856 transcriptional regulator transcription regulation -1 34808 35281
YP_398963.1 NC_007603_p19 terminase small subunit phrog_606 terminase small subunit head and packaging 1 5813 6319
YP_398967.1 NC_007603_p23 portal protein phrog_146 portal protein head and packaging 1 8913 10181
YP_398958.1 NC_007603_p14 hypothetical protein singleton unknown function unknown function 1 4101 4283
YP_398984.1 NC_007603_p40 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 21464 21979
YP_398961.1 NC_007603_p17 hypothetical protein phrog_2919 unknown function unknown function 1 5214 5366
YP_398992.1 NC_007603_p48 recombination protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 29701 30351
YP_398998.1 NC_007603_p54 hypothetical protein phrog_824 unknown function unknown function 1 37379 37798
YP_399000.1 NC_007603_p56 hypothetical protein phrog_2676 unknown function unknown function 1 38075 38296
YP_398976.1 NC_007603_p32 hypothetical protein phrog_179 tail terminator connector 1 15208 15597
YP_398964.1 NC_007603_p20 HNH-endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 6388 6864
YP_398990.1 NC_007603_p46 hypothetical protein phrog_35664 unknown function unknown function 1 28260 28658
YP_398962.1 NC_007603_p18 hypothetical protein singleton unknown function unknown function 1 5457 5738
YP_398995.1 NC_007603_p51 DNA primase phrog_510 DNA primase DNA, RNA and nucleotide metabolism -1 33826 34749