| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_007603 |
Definition |
Enterobacteria phage RTP, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Braunvirinae; Rtpvirus. |
DB of origin |
REFSEQ |
Length |
46219 |
Host Name |
Escherichia coli |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
75 |
%GC |
44.28 |
Number of singletons |
10 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_398972.1 | NC_007603_p28 | hypothetical protein | phrog_2716 | unknown function | unknown function | 1 | 13610 | 13855 |
| YP_398999.1 | NC_007603_p55 | hypothetical protein | phrog_6031 | unknown function | unknown function | 1 | 37875 | 38075 |
| YP_398974.1 | NC_007603_p30 | conserved phage-related protein | phrog_161 | head closure Hc1 | connector | 1 | 14405 | 14776 |
| YP_399005.1 | NC_007603_p61 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 39259 | 40395 |
| YP_399015.1 | NC_007603_p71 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44713 | 44886 |
| YP_398982.1 | NC_007603_p38 | minor tail protein | phrog_14 | minor tail protein | tail | 1 | 20251 | 20601 |
| YP_399001.1 | NC_007603_p57 | hypothetical protein | phrog_3249 | unknown function | unknown function | 1 | 38293 | 38481 |
| YP_399012.1 | NC_007603_p68 | hypothetical protein | singleton | unknown function | unknown function | -1 | 43963 | 44202 |
| YP_399010.1 | NC_007603_p66 | hypothetical protein | phrog_2794 | unknown function | unknown function | -1 | 41854 | 42129 |
| YP_399008.1 | NC_007603_p64 | endolysin | phrog_7 | endolysin | lysis | 1 | 40989 | 41474 |
| YP_398965.1 | NC_007603_p21 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 6857 | 8428 |
| YP_398971.1 | NC_007603_p27 | hypothetical protein | phrog_264 | major head protein | head and packaging | 1 | 12574 | 13518 |
| YP_398993.1 | NC_007603_p49 | single-stranded DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 30395 | 30826 |
| YP_398979.1 | NC_007603_p35 | hypothetical protein | phrog_569 | tail length tape measure protein | tail | 1 | 16785 | 17099 |
| YP_398954.1 | NC_007603_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3152 | 3442 |
| YP_399019.1 | NC_007603_p75 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45546 | 45749 |
| YP_398946.1 | NC_007603_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1064 | 1123 |
| YP_399011.1 | NC_007603_p67 | hypothetical protein | phrog_2373 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 42193 | 43776 |
| YP_398989.1 | NC_007603_p45 | phage lipoprotein | phrog_4281 | unknown function | unknown function | -1 | 27687 | 27917 |
| YP_398956.1 | NC_007603_p12 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 3765 | 3887 |
| YP_398959.1 | NC_007603_p15 | hypothetical protein | phrog_303 | unknown function | unknown function | 1 | 4299 | 4535 |
| YP_399017.1 | NC_007603_p73 | hypothetical protein | phrog_4448 | unknown function | unknown function | -1 | 45111 | 45350 |
| YP_398968.1 | NC_007603_p24 | phage head morphogenesis protein | phrog_324 | head morphogenesis | head and packaging | 1 | 10234 | 10866 |
| YP_399014.1 | NC_007603_p70 | hypothetical protein | phrog_5407 | unknown function | unknown function | -1 | 44552 | 44713 |
| YP_398980.1 | NC_007603_p36 | hypothetical protein | phrog_680 | tail length tape measure protein | tail | 1 | 17108 | 17419 |
| YP_398970.1 | NC_007603_p26 | hypothetical protein | phrog_1989 | unknown function | unknown function | 1 | 11981 | 12460 |
| YP_398952.1 | NC_007603_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2742 | 2930 |
| YP_399003.1 | NC_007603_p59 | hypothetical protein | phrog_2817 | unknown function | unknown function | 1 | 38674 | 38922 |
| YP_398986.1 | NC_007603_p42 | tail assembly protein | phrog_32 | tail assembly protein | tail | 1 | 22699 | 23271 |
| YP_398981.1 | NC_007603_p37 | tail tape-measure protein | phrog_24 | tail length tape measure protein | tail | 1 | 17455 | 20220 |
| YP_398985.1 | NC_007603_p41 | minor tail protein | phrog_30 | minor tail protein | tail | 1 | 21960 | 22718 |
| YP_398997.1 | NC_007603_p53 | ATP-dependent helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 35383 | 37377 |
| YP_398987.1 | NC_007603_p43 | tail fiber protein | phrog_31 | central tail fiber J | tail | 1 | 23313 | 26723 |
| YP_398991.1 | NC_007603_p47 | exodeoxyribonuclease VIII (RecE) | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 28662 | 29627 |
| YP_398977.1 | NC_007603_p33 | major tail protein | phrog_584 | major tail protein | tail | 1 | 15613 | 16269 |
| YP_399006.1 | NC_007603_p62 | hypothetical protein | phrog_4788 | unknown function | unknown function | 1 | 40469 | 40642 |
| YP_398966.1 | NC_007603_p22 | hypothetical protein | phrog_14592 | virion structural protein | head and packaging | 1 | 8500 | 8856 |
| YP_398950.1 | NC_007603_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2432 | 2524 |
| YP_398951.1 | NC_007603_p7 | hypothetical protein | phrog_16063 | unknown function | unknown function | 1 | 2521 | 2745 |
| YP_399013.1 | NC_007603_p69 | hypothetical protein | phrog_2684 | unknown function | unknown function | -1 | 44199 | 44552 |
| YP_398988.1 | NC_007603_p44 | hypothetical protein | phrog_1265 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 26752 | 27687 |
| YP_398953.1 | NC_007603_p9 | hypothetical protein | phrog_3955 | unknown function | unknown function | 1 | 2934 | 3080 |
| YP_399004.1 | NC_007603_p60 | hypothetical protein | phrog_4596 | unknown function | unknown function | 1 | 38925 | 39176 |
| YP_398975.1 | NC_007603_p31 | conserved phage-related protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 14769 | 15206 |
| YP_398994.1 | NC_007603_p50 | tail fiber | phrog_16586 | tail fiber protein | tail | -1 | 30856 | 33738 |
| YP_398957.1 | NC_007603_p13 | hypothetical protein | phrog_22596 | unknown function | unknown function | 1 | 3887 | 4030 |
| YP_398949.1 | NC_007603_p5 | hypothetical protein | phrog_2452 | unknown function | unknown function | 1 | 2102 | 2362 |
| YP_399009.1 | NC_007603_p65 | hypothetical protein | phrog_1804 | Rz-like spanin | lysis | 1 | 41477 | 41839 |
| YP_398948.1 | NC_007603_p4 | polynucleotide kinase/phosphatase | phrog_415 | polynucleotide kinase | other | 1 | 1444 | 1983 |
| YP_399018.1 | NC_007603_p74 | hypothetical protein | phrog_9053 | unknown function | unknown function | -1 | 45361 | 45537 |
| YP_398973.1 | NC_007603_p29 | hypothetical protein | phrog_302 | virion structural protein | head and packaging | 1 | 14007 | 14405 |
| YP_399007.1 | NC_007603_p63 | holin | phrog_2877 | holin | lysis | 1 | 40773 | 40988 |
| YP_398983.1 | NC_007603_p39 | minor tail protein | phrog_18 | minor tail protein | tail | 1 | 20641 | 21396 |
| YP_398947.1 | NC_007603_p3 | hypothetical protein | phrog_6360 | unknown function | unknown function | 1 | 1120 | 1383 |
| YP_398969.1 | NC_007603_p25 | possible prohead protease | phrog_530 | head maturation protease | head and packaging | 1 | 10880 | 11968 |
| YP_398978.1 | NC_007603_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16380 | 16766 |
| YP_399016.1 | NC_007603_p72 | hypothetical protein | phrog_4548 | unknown function | unknown function | -1 | 44950 | 45114 |
| YP_399002.1 | NC_007603_p58 | hypothetical protein | phrog_2180 | unknown function | unknown function | 1 | 38552 | 38677 |
| YP_398945.1 | NC_007603_p1 | hypothetical protein | phrog_4841 | unknown function | unknown function | 1 | 546 | 1064 |
| YP_398955.1 | NC_007603_p11 | hypothetical protein | phrog_7411 | unknown function | unknown function | 1 | 3534 | 3713 |
| YP_398960.1 | NC_007603_p16 | hypothetical protein | phrog_16862 | unknown function | unknown function | 1 | 4997 | 5182 |
| YP_398996.1 | NC_007603_p52 | transcriptional regulator | phrog_2856 | transcriptional regulator | transcription regulation | -1 | 34808 | 35281 |
| YP_398963.1 | NC_007603_p19 | terminase small subunit | phrog_606 | terminase small subunit | head and packaging | 1 | 5813 | 6319 |
| YP_398967.1 | NC_007603_p23 | portal protein | phrog_146 | portal protein | head and packaging | 1 | 8913 | 10181 |
| YP_398958.1 | NC_007603_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4101 | 4283 |
| YP_398984.1 | NC_007603_p40 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 21464 | 21979 |
| YP_398961.1 | NC_007603_p17 | hypothetical protein | phrog_2919 | unknown function | unknown function | 1 | 5214 | 5366 |
| YP_398992.1 | NC_007603_p48 | recombination protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 29701 | 30351 |
| YP_398998.1 | NC_007603_p54 | hypothetical protein | phrog_824 | unknown function | unknown function | 1 | 37379 | 37798 |
| YP_399000.1 | NC_007603_p56 | hypothetical protein | phrog_2676 | unknown function | unknown function | 1 | 38075 | 38296 |
| YP_398976.1 | NC_007603_p32 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 15208 | 15597 |
| YP_398964.1 | NC_007603_p20 | HNH-endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 6388 | 6864 |
| YP_398990.1 | NC_007603_p46 | hypothetical protein | phrog_35664 | unknown function | unknown function | 1 | 28260 | 28658 |
| YP_398962.1 | NC_007603_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5457 | 5738 |
| YP_398995.1 | NC_007603_p51 | DNA primase | phrog_510 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 33826 | 34749 |