| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_007805 |
Definition |
Pseudomonas phage F10, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
39199 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
63 |
%GC |
62.08 |
Number of singletons |
3 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_001293347.1 | NC_007805_p3 | hypothetical protein | phrog_118 | head-tail adaptor | connector | 1 | 2554 | 2769 |
| YP_001293372.1 | NC_007805_p28 | Integrase | phrog_1 | integrase | integration and excision | -1 | 20558 | 21607 |
| YP_001293403.1 | NC_007805_p59 | Conserved hypothetical protein | phrog_518 | Rha-like transcriptional regulator | transcription regulation | 1 | 36329 | 36859 |
| YP_001293398.1 | NC_007805_p54 | DnaB-like replicative helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 32597 | 34027 |
| YP_001293369.1 | NC_007805_p25 | hypothetical protein | phrog_2712 | tail fiber protein | tail | 1 | 19190 | 19792 |
| YP_001293382.1 | NC_007805_p38 | Conserved hypothetical protein | phrog_3282 | sigma factor | transcription regulation | -1 | 25417 | 25800 |
| YP_001293350.1 | NC_007805_p6 | hypothetical protein | phrog_122 | head decoration | head and packaging | 1 | 6535 | 6852 |
| YP_001293396.1 | NC_007805_p52 | hypothetical protein | phrog_16167 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 30931 | 31815 |
| YP_001293348.1 | NC_007805_p4 | portal protein | phrog_21 | portal protein | head and packaging | 1 | 2769 | 4415 |
| YP_001293406.1 | NC_007805_p62 | lysis protein Rz | phrog_13 | Rz-like spanin | lysis | 1 | 37911 | 38360 |
| YP_001293351.1 | NC_007805_p7 | hypothetical protein | phrog_7243 | unknown function | unknown function | 1 | 6849 | 7178 |
| YP_001293366.1 | NC_007805_p22 | hypothetical protein | phrog_9891 | unknown function | unknown function | 1 | 18159 | 18350 |
| YP_001293402.1 | NC_007805_p58 | hypothetical protein | phrog_3412 | unknown function | unknown function | 1 | 35359 | 35916 |
| YP_001293380.1 | NC_007805_p36 | Conserved hypothetical protein | phrog_130 | anti-repressor Ant | transcription regulation | -1 | 24308 | 25105 |
| YP_001293365.1 | NC_007805_p21 | hypothetical protein | phrog_1084 | unknown function | unknown function | 1 | 17579 | 18166 |
| YP_001293384.1 | NC_007805_p40 | Cro repressor | phrog_35 | transcriptional repressor | transcription regulation | 1 | 26748 | 26969 |
| YP_001293387.1 | NC_007805_p43 | hypothetical protein | phrog_12707 | unknown function | unknown function | 1 | 27876 | 28226 |
| YP_001293371.1 | NC_007805_p27 | hypothetical protein | phrog_2687 | unknown function | unknown function | 1 | 20091 | 20324 |
| YP_001293360.1 | NC_007805_p16 | hypothetical protein | phrog_5842 | unknown function | unknown function | 1 | 12824 | 14521 |
| YP_001293394.1 | NC_007805_p50 | hypothetical protein | phrog_7732 | transcriptional regulator | transcription regulation | 1 | 30510 | 30740 |
| YP_001293401.1 | NC_007805_p57 | hypothetical protein | phrog_4935 | unknown function | unknown function | 1 | 35078 | 35362 |
| YP_001293376.1 | NC_007805_p32 | hypothetical protein | phrog_3765 | unknown function | unknown function | -1 | 22797 | 22919 |
| YP_001293359.1 | NC_007805_p15 | hypothetical protein | phrog_5314 | unknown function | unknown function | 1 | 12432 | 12824 |
| YP_001293355.1 | NC_007805_p11 | hypothetical protein | phrog_11596 | unknown function | unknown function | 1 | 8679 | 9311 |
| YP_001293358.1 | NC_007805_p14 | hypothetical protein | phrog_5314 | unknown function | unknown function | 1 | 12303 | 12824 |
| YP_001293375.1 | NC_007805_p31 | hypothetical protein | phrog_8961 | unknown function | unknown function | -1 | 22606 | 22800 |
| YP_001293362.1 | NC_007805_p18 | hypothetical protein | phrog_9464 | unknown function | unknown function | 1 | 14934 | 15479 |
| YP_001293397.1 | NC_007805_p53 | DNA replication protein DnaC | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 31812 | 32600 |
| YP_001293399.1 | NC_007805_p55 | hypothetical protein | phrog_6158 | unknown function | unknown function | 1 | 34087 | 34395 |
| YP_001293370.1 | NC_007805_p26 | hypothetical protein | phrog_2398 | unknown function | unknown function | 1 | 19792 | 20094 |
| YP_001293345.1 | NC_007805_p1 | small subunit (Nu1 homolog) of DNA packaging dimer | phrog_57 | terminase small subunit | head and packaging | 1 | 67 | 612 |
| YP_001293349.1 | NC_007805_p5 | Clp protease | phrog_133 | head maturation protease | head and packaging | 1 | 4387 | 6468 |
| YP_001293373.1 | NC_007805_p29 | hypothetical protein | phrog_4764 | excisionase | integration and excision | -1 | 21607 | 21849 |
| YP_001293392.1 | NC_007805_p48 | hypothetical protein | phrog_19529 | unknown function | unknown function | 1 | 29414 | 29749 |
| YP_001293405.1 | NC_007805_p61 | Predicted chitinase | phrog_181 | endolysin | lysis | 1 | 37273 | 37890 |
| YP_001293391.1 | NC_007805_p47 | hypothetical protein | phrog_24223 | unknown function | unknown function | 1 | 29092 | 29421 |
| YP_001293378.1 | NC_007805_p34 | hypothetical protein | phrog_7514 | unknown function | unknown function | -1 | 23665 | 24000 |
| YP_001293368.1 | NC_007805_p24 | hypothetical protein | phrog_7980 | unknown function | unknown function | 1 | 18916 | 19197 |
| YP_001293388.1 | NC_007805_p44 | hypothetical protein | phrog_6327 | unknown function | unknown function | 1 | 28223 | 28501 |
| YP_001293383.1 | NC_007805_p39 | Repressor protein | phrog_4 | transcriptional repressor | transcription regulation | -1 | 25986 | 26660 |
| YP_001293404.1 | NC_007805_p60 | Holin | phrog_126 | holin/anti-holin | lysis | 1 | 36944 | 37276 |
| YP_001293346.1 | NC_007805_p2 | large subunit (GpA homolog) of DNA packaging dimer | phrog_15 | terminase large subunit | head and packaging | 1 | 584 | 2563 |
| YP_001293400.1 | NC_007805_p56 | metallophosphoesterase | phrog_246 | NinI-like serine-threonine phosphatase | other | 1 | 34392 | 35081 |
| YP_001293357.1 | NC_007805_p13 | tail length tape measure protein | phrog_28 | tail length tape measure protein | tail | 1 | 9780 | 12263 |
| YP_001293390.1 | NC_007805_p46 | hypothetical protein | phrog_12894 | unknown function | unknown function | 1 | 28799 | 29095 |
| YP_001293353.1 | NC_007805_p9 | hypothetical protein | phrog_3357 | unknown function | unknown function | 1 | 7649 | 7843 |
| YP_001293363.1 | NC_007805_p19 | hypothetical protein | phrog_7250 | unknown function | unknown function | 1 | 15490 | 15894 |
| YP_001293407.1 | NC_007805_p63 | hypothetical protein | phrog_1924 | minor tail protein | tail | 1 | 38357 | 39100 |
| YP_001293393.1 | NC_007805_p49 | DNA-binding protein (Roi) | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 29746 | 30513 |
| YP_001293379.1 | NC_007805_p35 | hypothetical protein | phrog_2685 | partition protein ATPase | other | -1 | 24003 | 24233 |
| YP_001293385.1 | NC_007805_p41 | hypothetical protein | phrog_12729 | unknown function | unknown function | 1 | 27178 | 27570 |
| YP_001293374.1 | NC_007805_p30 | hypothetical protein | phrog_7215 | unknown function | unknown function | -1 | 21833 | 22609 |
| YP_001293389.1 | NC_007805_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28498 | 28806 |
| YP_001293381.1 | NC_007805_p37 | hypothetical protein | phrog_27325 | unknown function | unknown function | -1 | 25116 | 25406 |
| YP_001293377.1 | NC_007805_p33 | Conserved hypothetical protein | phrog_28713 | unknown function | unknown function | -1 | 22916 | 23668 |
| YP_001293367.1 | NC_007805_p23 | hypothetical protein | phrog_7946 | unknown function | unknown function | 1 | 18322 | 18915 |
| YP_001293364.1 | NC_007805_p20 | hypothetical protein | phrog_11921 | unknown function | unknown function | 1 | 15891 | 17549 |
| YP_001293361.1 | NC_007805_p17 | hypothetical protein | phrog_6427 | unknown function | unknown function | 1 | 14524 | 14934 |
| YP_001293354.1 | NC_007805_p10 | hypothetical protein | phrog_807 | major tail protein with Ig-like domain | tail | 1 | 7845 | 8597 |
| YP_001293386.1 | NC_007805_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27509 | 27769 |
| YP_001293356.1 | NC_007805_p12 | hypothetical protein | phrog_7608 | unknown function | unknown function | 1 | 9375 | 9677 |
| YP_001293395.1 | NC_007805_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30737 | 30931 |
| YP_001293352.1 | NC_007805_p8 | hypothetical protein | phrog_5185 | unknown function | unknown function | 1 | 7175 | 7645 |