Genomic map of Clostridium virus phiCD119 (NC_007917)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_007917
Definition
Clostridium phage phi CD119, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus.
DB of origin
REFSEQ
Length
53325
Host Name
Clostridium difficile
Host domain
Bacteria
Is prophage?
undef
Number of proteins
79
%GC
28.77
Number of singletons
0
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_529558.1 NC_007917_p7 hypothetical protein phrog_4166 unknown function unknown function 1 5737 5931
YP_529591.1 NC_007917_p40 hypothetical protein phrog_32696 unknown function unknown function 1 27702 28109
YP_529563.1 NC_007917_p12 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 8909 9259
YP_529606.1 NC_007917_p55 hypothetical protein phrog_4813 unknown function unknown function 1 40057 40347
YP_529554.1 NC_007917_p3 hypothetical protein phrog_35162 unknown function unknown function 1 1897 2595
YP_529565.1 NC_007917_p14 XkdK protein phrog_1480 tail sheath tail 1 9723 10793
YP_529573.1 NC_007917_p22 hypothetical protein phrog_1664 unknown function unknown function 1 17463 17705
YP_529629.1 NC_007917_p78 hypothetical protein phrog_37271 unknown function unknown function 1 52718 53017
YP_529613.1 NC_007917_p62 hypothetical protein phrog_19245 unknown function unknown function 1 43341 43997
YP_529614.1 NC_007917_p63 hypothetical protein phrog_21522 unknown function unknown function 1 43969 44337
YP_529622.1 NC_007917_p71 Holliday junction resolvase phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 47542 47895
YP_529611.1 NC_007917_p60 hypothetical protein phrog_363 DNA methyltransferase other 1 41947 42729
YP_529624.1 NC_007917_p73 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 48785 49273
YP_529618.1 NC_007917_p67 hypothetical protein phrog_31216 unknown function unknown function 1 45609 46076
YP_529623.1 NC_007917_p72 hypothetical protein phrog_373 anti-repressor transcription regulation 1 47984 48691
YP_529604.1 NC_007917_p53 hypothetical protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 39274 39681
YP_529568.1 NC_007917_p17 tape measure protein phrog_1272 tail length tape measure protein tail 1 11918 14752
YP_529589.1 NC_007917_p38 hypothetical protein phrog_20189 unknown function unknown function 1 26971 27402
YP_529630.1 NC_007917_p79 hypothetical protein phrog_28310 unknown function unknown function 1 53083 53313
YP_529576.1 NC_007917_p25 hypothetical protein phrog_579 unknown function unknown function 1 19500 19826
YP_529556.1 NC_007917_p5 head protein phrog_115 minor head protein head and packaging 1 3978 5018
YP_529598.1 NC_007917_p47 antirepressor phrog_63 anti-repressor Ant transcription regulation 1 34260 35093
YP_529612.1 NC_007917_p61 hypothetical protein phrog_8411 unknown function unknown function 1 42710 43042
YP_529578.1 NC_007917_p27 XkdT protein phrog_6 baseplate wedge subunit tail 1 20248 21300
YP_529553.1 NC_007917_p2 terminase large subunit phrog_5573 terminase large subunit head and packaging 1 778 1746
YP_529571.1 NC_007917_p20 XkdP protein phrog_21966 unknown function unknown function 1 16769 17155
YP_529566.1 NC_007917_p15 XkdM protein phrog_365 tail protein tail 1 10808 11239
YP_529580.1 NC_007917_p29 hypothetical protein phrog_1780 tail collar fiber protein tail 1 21925 22323
YP_529564.1 NC_007917_p13 hypothetical protein phrog_525 unknown function unknown function 1 9270 9722
YP_529581.1 NC_007917_p30 hypothetical protein phrog_2137 tail fiber protein tail 1 22382 22705
YP_529574.1 NC_007917_p23 XkdQ protein phrog_400 tail protein tail 1 17964 18650
YP_529610.1 NC_007917_p59 hypothetical protein phrog_8001 unknown function unknown function 1 41527 41862
YP_529595.1 NC_007917_p44 hypothetical protein phrog_497 toxin-antitoxin system HicB-like moron, auxiliary metabolic gene and host takeover -1 31732 32133
YP_529597.1 NC_007917_p46 hypothetical protein phrog_3 transcriptional repressor transcription regulation -1 33693 33911
YP_529605.1 NC_007917_p54 hypothetical protein phrog_20040 unknown function unknown function 1 39756 40010
YP_529584.1 NC_007917_p33 hypothetical protein phrog_1193 hemolysin other 1 24212 24442
YP_529587.1 NC_007917_p36 hypothetical protein phrog_17410 unknown function unknown function 1 25551 25847
YP_529617.1 NC_007917_p66 hypothetical protein phrog_4572 unknown function unknown function 1 45235 45606
YP_529583.1 NC_007917_p32 hypothetical protein phrog_1243 unknown function unknown function 1 23994 24176
YP_529615.1 NC_007917_p64 hypothetical protein phrog_424 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover 1 44368 45072
YP_529570.1 NC_007917_p19 hypothetical protein phrog_34918 unknown function unknown function 1 16506 16751
YP_529569.1 NC_007917_p18 hypothetical protein phrog_888 unknown function unknown function 1 14957 15577
YP_529621.1 NC_007917_p70 methyltransferase phrog_56 DNA methyltransferase other 1 46722 47528
YP_529562.1 NC_007917_p11 hypothetical protein phrog_615 head-tail adaptor connector 1 8496 8846
YP_529625.1 NC_007917_p74 hypothetical protein phrog_3291 unknown function unknown function 1 50000 50194
YP_529596.1 NC_007917_p45 RepR phrog_8 transcriptional regulator transcription regulation -1 32781 33176
YP_529585.1 NC_007917_p34 holin phrog_1129 holin lysis 1 24462 24719
YP_529582.1 NC_007917_p31 hypothetical protein phrog_1589 unknown function unknown function 1 22723 23994
YP_529620.1 NC_007917_p69 hypothetical protein phrog_19701 unknown function unknown function 1 46354 46593
YP_529600.1 NC_007917_p49 hypothetical protein phrog_4370 excisionase integration and excision 1 35954 36310
YP_529602.1 NC_007917_p51 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 37525 38133
YP_529609.1 NC_007917_p58 hypothetical protein phrog_3221 unknown function unknown function 1 41354 41527
YP_529616.1 NC_007917_p65 hypothetical protein phrog_2994 unknown function unknown function 1 45069 45242
YP_529607.1 NC_007917_p56 hypothetical protein phrog_10069 unknown function unknown function 1 40344 40709
YP_529552.1 NC_007917_p1 terminase small subunit phrog_4758 terminase large subunit head and packaging 1 201 692
YP_529603.1 NC_007917_p52 replication protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 38134 39024
YP_529559.1 NC_007917_p8 scaffold protein phrog_194 head scaffolding protein head and packaging 1 6323 6919
YP_529560.1 NC_007917_p9 capsid protein phrog_422 major head protein head and packaging 1 6943 7881
YP_529588.1 NC_007917_p37 hypothetical protein phrog_27061 unknown function unknown function 1 26360 26953
YP_529601.1 NC_007917_p50 hypothetical protein phrog_20203 unknown function unknown function 1 37273 37515
YP_529561.1 NC_007917_p10 hypothetical protein phrog_132 head-tail adaptor connector 1 8142 8423
YP_529590.1 NC_007917_p39 hypothetical protein phrog_22416 unknown function unknown function 1 27404 27730
YP_529575.1 NC_007917_p24 hypothetical protein phrog_12508 unknown function unknown function 1 18694 19317
YP_529599.1 NC_007917_p48 hypothetical protein phrog_9579 unknown function unknown function 1 35137 35331
YP_529572.1 NC_007917_p21 hypothetical protein phrog_1664 unknown function unknown function 1 17134 17442
YP_529555.1 NC_007917_p4 portal protein phrog_64 portal protein head and packaging 1 2610 3965
YP_529627.1 NC_007917_p76 hypothetical protein phrog_4010 unknown function unknown function 1 50824 51069
YP_529567.1 NC_007917_p16 XkdN protein phrog_389 tail protein XkdN-like tail 1 11271 11741
YP_529608.1 NC_007917_p57 hypothetical protein phrog_1310 unknown function unknown function 1 40774 41094
YP_529586.1 NC_007917_p35 lysin phrog_435 endolysin lysis 1 24719 25534
YP_529626.1 NC_007917_p75 hypothetical protein phrog_1758 acetyltransferase other 1 50194 50805
YP_529619.1 NC_007917_p68 hypothetical protein phrog_6066 unknown function unknown function 1 46155 46340
YP_529593.1 NC_007917_p42 hypothetical protein phrog_1077 transcriptional regulator transcription regulation 1 29883 30155
YP_529557.1 NC_007917_p6 hypothetical protein phrog_4502 unknown function unknown function 1 5086 5715
YP_529628.1 NC_007917_p77 hypothetical protein phrog_11123 unknown function unknown function 1 51466 52410
YP_529592.1 NC_007917_p41 hypothetical protein phrog_1077 transcriptional regulator transcription regulation 1 29562 29843
YP_529577.1 NC_007917_p26 XkdS protein phrog_120 baseplate wedge subunit tail 1 19826 20194
YP_529594.1 NC_007917_p43 integrase phrog_1 integrase integration and excision -1 30567 31673
YP_529579.1 NC_007917_p28 hypothetical protein phrog_521 tail protein tail 1 21300 21908