| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_007924 |
Definition |
Lactobacillus phage KC5a, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae. |
DB of origin |
REFSEQ |
Length |
38239 |
Host Name |
Lactobacillus gasseri |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
61 |
%GC |
36.89 |
Number of singletons |
6 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_529865.1 | NC_007924_p30 | hypothetical protein | singleton | unknown function | unknown function | -1 | 12990 | 13103 |
| YP_529857.1 | NC_007924_p22 | holiday junction resolvase | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 9586 | 10047 |
| YP_529854.1 | NC_007924_p19 | hypothetical protein | phrog_1945 | unknown function | unknown function | 1 | 8909 | 9208 |
| YP_529847.1 | NC_007924_p12 | phage replication protein | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 5571 | 6479 |
| YP_529846.1 | NC_007924_p11 | hypothetical protein | phrog_8492 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 4752 | 5555 |
| YP_529849.1 | NC_007924_p14 | hypothetical protein | phrog_35711 | unknown function | unknown function | 1 | 6843 | 7424 |
| YP_529874.1 | NC_007924_p39 | phage major capsid protein | phrog_422 | major head protein | head and packaging | 1 | 19837 | 20877 |
| YP_529894.1 | NC_007924_p59 | hypothetical protein | phrog_6664 | unknown function | unknown function | 1 | 36076 | 36354 |
| YP_529861.1 | NC_007924_p26 | hypothetical protein | phrog_22933 | unknown function | unknown function | 1 | 11035 | 11202 |
| YP_529855.1 | NC_007924_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9211 | 9513 |
| YP_529892.1 | NC_007924_p57 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 35495 | 35695 |
| YP_529870.1 | NC_007924_p35 | phage terminase large subunit B | phrog_2 | terminase large subunit | head and packaging | 1 | 15382 | 16611 |
| YP_529845.1 | NC_007924_p10 | hypothetical protein | phrog_7634 | unknown function | unknown function | 1 | 4468 | 4746 |
| YP_529838.1 | NC_007924_p3 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 2000 | 2284 |
| YP_529867.1 | NC_007924_p32 | hypothetical protein | phrog_32324 | unknown function | unknown function | 1 | 13951 | 14133 |
| YP_529883.1 | NC_007924_p48 | minor tail protein | phrog_1204 | tail protein | tail | 1 | 25176 | 28730 |
| YP_529841.1 | NC_007924_p6 | hypothetical protein | phrog_823 | unknown function | unknown function | 1 | 3208 | 3543 |
| YP_529895.1 | NC_007924_p60 | holin | phrog_10813 | holin | lysis | 1 | 36323 | 36769 |
| YP_529889.1 | NC_007924_p54 | hypothetical protein | phrog_521 | tail protein | tail | 1 | 32307 | 32867 |
| YP_529840.1 | NC_007924_p5 | CI-like repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 2951 | 3175 |
| YP_529878.1 | NC_007924_p43 | hypothetical protein | phrog_525 | unknown function | unknown function | 1 | 22062 | 22469 |
| YP_529868.1 | NC_007924_p33 | phage terminase large subunit A | phrog_13702 | terminase large subunit | head and packaging | 1 | 14153 | 14809 |
| YP_529856.1 | NC_007924_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9503 | 9589 |
| YP_529875.1 | NC_007924_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21066 | 21275 |
| YP_529884.1 | NC_007924_p49 | LysM-like protein | phrog_380 | endolysin | lysis | 1 | 28732 | 29412 |
| YP_529882.1 | NC_007924_p47 | hypothetical protein | phrog_389 | tail protein XkdN-like | tail | 1 | 24520 | 24939 |
| YP_529839.1 | NC_007924_p4 | transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | -1 | 2457 | 2723 |
| YP_529887.1 | NC_007924_p52 | hypothetical protein | phrog_120 | baseplate wedge subunit | tail | 1 | 30753 | 31169 |
| YP_529869.1 | NC_007924_p34 | phage terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 14871 | 15410 |
| YP_529848.1 | NC_007924_p13 | transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | 1 | 6487 | 6840 |
| YP_529836.1 | NC_007924_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 121 | 1242 |
| YP_529879.1 | NC_007924_p44 | hypothetical protein | phrog_966 | unknown function | unknown function | 1 | 22453 | 22671 |
| YP_529842.1 | NC_007924_p7 | hypothetical protein | phrog_18877 | unknown function | unknown function | 1 | 3512 | 3820 |
| YP_529893.1 | NC_007924_p58 | hypothetical protein | phrog_4325 | holin | lysis | 1 | 35733 | 36065 |
| YP_529877.1 | NC_007924_p42 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 21631 | 22065 |
| YP_529853.1 | NC_007924_p18 | hypothetical protein | phrog_17798 | unknown function | unknown function | 1 | 8695 | 8904 |
| YP_529850.1 | NC_007924_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7417 | 7728 |
| YP_529872.1 | NC_007924_p37 | phage head protein | phrog_115 | minor head protein | head and packaging | 1 | 18004 | 19158 |
| YP_529881.1 | NC_007924_p46 | phage core tail protein | phrog_365 | tail protein | tail | 1 | 24038 | 24508 |
| YP_529890.1 | NC_007924_p55 | hypothetical protein | phrog_12519 | unknown function | unknown function | 1 | 32880 | 34955 |
| YP_529852.1 | NC_007924_p17 | hypothetical protein | phrog_8594 | unknown function | unknown function | 1 | 8501 | 8719 |
| YP_529862.1 | NC_007924_p27 | hypothetical protein | phrog_248 | transcriptional activator | transcription regulation | 1 | 11232 | 11762 |
| YP_529891.1 | NC_007924_p56 | hypothetical protein | phrog_8791 | unknown function | unknown function | 1 | 34995 | 35495 |
| YP_529880.1 | NC_007924_p45 | phage sheath tail protein | phrog_279 | tail sheath | tail | 1 | 22671 | 24026 |
| YP_529859.1 | NC_007924_p24 | hypothetical protein | phrog_16953 | unknown function | unknown function | 1 | 10492 | 10827 |
| YP_529886.1 | NC_007924_p51 | hypothetical protein | phrog_579 | unknown function | unknown function | 1 | 30434 | 30796 |
| YP_529873.1 | NC_007924_p38 | phage minor capsid protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 19278 | 19832 |
| YP_529860.1 | NC_007924_p25 | hypothetical protein | phrog_17520 | unknown function | unknown function | 1 | 10830 | 11048 |
| YP_529851.1 | NC_007924_p16 | anti-repressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 7706 | 8419 |
| YP_529837.1 | NC_007924_p2 | hypothetical protein | phrog_6148 | beta-lactamase-inhibitor protein BLIP | moron, auxiliary metabolic gene and host takeover | -1 | 1312 | 1935 |
| YP_529844.1 | NC_007924_p9 | hypothetical protein | phrog_16169 | unknown function | unknown function | 1 | 4142 | 4468 |
| YP_529863.1 | NC_007924_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12217 | 12501 |
| YP_529885.1 | NC_007924_p50 | hypothetical protein | phrog_400 | tail protein | tail | 1 | 29409 | 30455 |
| YP_529864.1 | NC_007924_p29 | transcriptional regulator | phrog_18056 | ParB-like partition nuclease | DNA, RNA and nucleotide metabolism | 1 | 12628 | 12912 |
| YP_529843.1 | NC_007924_p8 | recombination protein | phrog_15265 | recombinase | other | 1 | 3945 | 4097 |
| YP_529896.1 | NC_007924_p61 | lysin | phrog_291 | endolysin | lysis | 1 | 36762 | 37502 |
| YP_529876.1 | NC_007924_p41 | hypothetical protein | phrog_615 | head-tail adaptor | connector | 1 | 21272 | 21634 |
| YP_529866.1 | NC_007924_p31 | hypothetical protein | phrog_1305 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 13353 | 13970 |
| YP_529871.1 | NC_007924_p36 | phage portal protein | phrog_64 | portal protein | head and packaging | 1 | 16602 | 18014 |
| YP_529888.1 | NC_007924_p53 | tail protein | phrog_6 | baseplate wedge subunit | tail | 1 | 31166 | 32317 |
| YP_529858.1 | NC_007924_p23 | hypothetical protein | phrog_20359 | unknown function | unknown function | 1 | 10049 | 10339 |