Genomic map of Mycobacterium virus Llij (NC_008196)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_008196
Definition
Mycobacterium phage Llij, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus.
DB of origin
REFSEQ
Length
56852
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
100
%GC
61.52
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_655038.1 NC_008196_p42 hypothetical protein phrog_2838 transcriptional repressor transcription regulation -1 33501 34241
YP_655086.1 NC_008196_p90 hypothetical protein phrog_8604 unknown function unknown function 1 51368 51970
YP_655073.1 NC_008196_p77 hypothetical protein phrog_647 unknown function unknown function 1 46445 46729
YP_655085.1 NC_008196_p89 hypothetical protein phrog_908 unknown function unknown function 1 50685 51371
YP_655014.1 NC_008196_p18 hypothetical protein phrog_346 minor tail protein tail 1 17383 19920
YP_654997.1 NC_008196_p1 hypothetical protein phrog_226 minor tail protein tail 1 109 564
YP_655000.1 NC_008196_p4 hypothetical protein phrog_1522 head maturation protease head and packaging 1 3612 4367
YP_655090.1 NC_008196_p94 hypothetical protein phrog_1385 unknown function unknown function 1 52931 53173
YP_655028.1 NC_008196_p32 hypothetical protein phrog_443 holin lysis 1 28514 28747
YP_655047.1 NC_008196_p51 hypothetical protein phrog_1849 unknown function unknown function 1 37238 37516
YP_655021.1 NC_008196_p25 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 25080 25277
YP_655092.1 NC_008196_p96 hypothetical protein phrog_1579 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 53354 54793
YP_655067.1 NC_008196_p71 hypothetical protein phrog_2730 unknown function unknown function 1 45084 45287
YP_655072.1 NC_008196_p76 hypothetical protein phrog_3447 unknown function unknown function 1 46236 46448
YP_655024.1 NC_008196_p28 hypothetical protein phrog_1172 unknown function unknown function 1 25862 26002
YP_655055.1 NC_008196_p59 hypothetical protein phrog_2632 unknown function unknown function 1 39858 40139
YP_655037.1 NC_008196_p41 hypothetical protein phrog_1948 unknown function unknown function -1 32792 33238
YP_655041.1 NC_008196_p45 hypothetical protein phrog_5253 unknown function unknown function 1 35396 35695
YP_655029.1 NC_008196_p33 hypothetical protein phrog_404 minor tail protein tail 1 28744 29118
YP_655074.1 NC_008196_p78 hypothetical protein phrog_722 unknown function unknown function 1 46722 46910
YP_655052.1 NC_008196_p56 hypothetical protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 39114 39479
YP_655065.1 NC_008196_p69 hypothetical protein phrog_3171 replication initiation protein DNA, RNA and nucleotide metabolism 1 43853 44827
YP_655018.1 NC_008196_p22 hypothetical protein phrog_2005 minor tail protein tail 1 23348 23602
YP_655033.1 NC_008196_p37 hypothetical protein phrog_1839 unknown function unknown function 1 30485 30577
YP_655008.1 NC_008196_p12 hypothetical protein phrog_621 tail assembly chaperone tail 1 8549 9100
YP_655069.1 NC_008196_p73 hypothetical protein phrog_1573 DNA methyltransferase other 1 45475 45903
YP_655048.1 NC_008196_p52 hypothetical protein phrog_658 unknown function unknown function 1 37513 37860
YP_655045.1 NC_008196_p49 hypothetical protein phrog_3381 unknown function unknown function 1 36375 36548
YP_655060.1 NC_008196_p64 hypothetical protein phrog_2704 unknown function unknown function 1 42013 42156
YP_655062.1 NC_008196_p66 hypothetical protein phrog_424 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover 1 42302 43150
YP_655059.1 NC_008196_p63 hypothetical protein phrog_6938 unknown function unknown function 1 41744 42013
YP_655031.1 NC_008196_p35 hypothetical protein phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 29363 30184
YP_655004.1 NC_008196_p8 hypothetical protein phrog_763 head-tail adaptor connector 1 6460 6789
YP_655094.1 NC_008196_p98 hypothetical protein phrog_854 glucosyltransferase moron, auxiliary metabolic gene and host takeover 1 54999 55622
YP_655025.1 NC_008196_p29 hypothetical protein phrog_747 unknown function unknown function 1 26076 26309
YP_655034.1 NC_008196_p38 hypothetical protein phrog_3693 unknown function unknown function -1 30680 30835
YP_655030.1 NC_008196_p34 hypothetical protein phrog_2004 unknown function unknown function 1 29143 29376
YP_655005.1 NC_008196_p9 hypothetical protein phrog_1929 head-tail connector protein connector 1 6796 7122
YP_655043.1 NC_008196_p47 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision 1 35993 36190
YP_655026.1 NC_008196_p30 hypothetical protein phrog_700 endolysin lysis 1 26306 27499
YP_655061.1 NC_008196_p65 hypothetical protein phrog_2070 unknown function unknown function 1 42153 42305
YP_655035.1 NC_008196_p39 hypothetical protein phrog_2437 unknown function unknown function -1 30826 31026
YP_655013.1 NC_008196_p17 hypothetical protein phrog_732 minor tail protein tail 1 16541 17386
YP_655002.1 NC_008196_p6 hypothetical protein phrog_267 major head protein head and packaging 1 5064 5885
YP_655053.1 NC_008196_p57 hypothetical protein phrog_2078 unknown function unknown function 1 39479 39634
YP_655087.1 NC_008196_p91 hypothetical protein phrog_1869 unknown function unknown function 1 52157 52321
YP_655063.1 NC_008196_p67 hypothetical protein phrog_1311 unknown function unknown function 1 43159 43293
YP_655003.1 NC_008196_p7 hypothetical protein phrog_2377 head-tail adaptor Ad1 connector 1 5894 6463
YP_655078.1 NC_008196_p82 hypothetical protein phrog_1901 unknown function unknown function 1 48031 48237
YP_655095.1 NC_008196_p99 hypothetical protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 55622 55966
YP_655010.1 NC_008196_p14 hypothetical protein phrog_1942 tail length tape measure protein tail 1 9482 12994
YP_655007.1 NC_008196_p11 hypothetical protein phrog_476 major tail protein tail 1 7626 8435
YP_655042.1 NC_008196_p46 hypothetical protein phrog_2025 unknown function unknown function 1 35692 35907
YP_654998.1 NC_008196_p2 hypothetical protein phrog_9 terminase large subunit head and packaging 1 587 2224
YP_655093.1 NC_008196_p97 hypothetical protein phrog_1693 unknown function unknown function 1 54796 55002
YP_655023.1 NC_008196_p27 hypothetical protein phrog_932 unknown function unknown function 1 25719 25865
YP_655080.1 NC_008196_p84 hypothetical protein singleton unknown function unknown function 1 49624 49773
YP_655012.1 NC_008196_p16 hypothetical protein phrog_110 minor tail protein tail 1 14790 16499
YP_655071.1 NC_008196_p75 hypothetical protein phrog_3647 unknown function unknown function 1 46078 46239
YP_655083.1 NC_008196_p87 hypothetical protein phrog_2278 unknown function unknown function 1 50129 50419
YP_655046.1 NC_008196_p50 hypothetical protein phrog_1797 unknown function unknown function 1 36545 37129
YP_655091.1 NC_008196_p95 hypothetical protein phrog_2057 unknown function unknown function 1 53166 53327
YP_655076.1 NC_008196_p80 hypothetical protein phrog_647 unknown function unknown function 1 47508 47834
YP_655084.1 NC_008196_p88 hypothetical protein phrog_2247 unknown function unknown function 1 50419 50688
YP_655006.1 NC_008196_p10 hypothetical protein phrog_813 head-tail adaptor connector 1 7112 7516
YP_655051.1 NC_008196_p55 hypothetical protein phrog_472 WhiB transcriptional factor transcription regulation 1 38833 39117
YP_655075.1 NC_008196_p79 hypothetical protein phrog_1900 mobile element MPME moron, auxiliary metabolic gene and host takeover 1 46980 47351
YP_655019.1 NC_008196_p23 hypothetical protein phrog_2012 minor tail protein tail 1 23615 24253
YP_655077.1 NC_008196_p81 hypothetical protein phrog_13181 unknown function unknown function 1 47831 48034
YP_655020.1 NC_008196_p24 hypothetical protein phrog_754 minor tail protein tail 1 24250 25074
YP_655089.1 NC_008196_p93 hypothetical protein phrog_1186 unknown function unknown function 1 52521 52934
YP_655011.1 NC_008196_p15 hypothetical protein phrog_106 minor tail protein tail 1 12995 14704
YP_655040.1 NC_008196_p44 hypothetical protein phrog_130 anti-repressor Ant transcription regulation 1 34533 35399
YP_655056.1 NC_008196_p60 hypothetical protein phrog_3290 single strand annealing protein DNA, RNA and nucleotide metabolism 1 40136 40714
YP_654999.1 NC_008196_p3 hypothetical protein phrog_104 portal protein head and packaging 1 2255 3625
YP_655088.1 NC_008196_p92 hypothetical protein phrog_1694 unknown function unknown function 1 52327 52524
YP_655036.1 NC_008196_p40 hypothetical protein phrog_1 integrase integration and excision 1 31422 32711
YP_655015.1 NC_008196_p19 hypothetical protein phrog_382 minor tail protein with lysin activity tail 1 19917 21803
YP_655064.1 NC_008196_p68 hypothetical protein phrog_3312 endonuclease DNA, RNA and nucleotide metabolism 1 43293 43853
YP_655058.1 NC_008196_p62 hypothetical protein phrog_2233 unknown function unknown function 1 41070 41747
YP_655044.1 NC_008196_p48 hypothetical protein phrog_1816 unknown function unknown function 1 36187 36378
YP_655016.1 NC_008196_p20 hypothetical protein phrog_2106 minor tail protein tail 1 21800 22966
YP_655082.1 NC_008196_p86 hypothetical protein phrog_1545 unknown function unknown function 1 49936 50076
YP_655032.1 NC_008196_p36 hypothetical protein phrog_1791 unknown function unknown function 1 30202 30492
YP_655050.1 NC_008196_p54 hypothetical protein phrog_2096 unknown function unknown function 1 38351 38836
YP_655068.1 NC_008196_p72 hypothetical protein phrog_1943 unknown function unknown function 1 45284 45478
YP_655039.1 NC_008196_p43 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 34261 34473
YP_655070.1 NC_008196_p74 hypothetical protein phrog_2591 unknown function unknown function 1 45896 46081
YP_655054.1 NC_008196_p58 hypothetical protein phrog_1834 unknown function unknown function 1 39631 39861
YP_655081.1 NC_008196_p85 hypothetical protein phrog_1091 unknown function unknown function 1 49760 49939
YP_655009.1 NC_008196_p13 hypothetical protein phrog_15976 tail assembly chaperone tail 1 9048 9485
YP_655066.1 NC_008196_p70 hypothetical protein phrog_2080 unknown function unknown function 1 44824 45084
YP_655096.1 NC_008196_p100 hypothetical protein phrog_1271 HNH endonuclease DNA, RNA and nucleotide metabolism 1 56053 56796
YP_655049.1 NC_008196_p53 hypothetical protein phrog_1333 unknown function unknown function 1 37860 38354
YP_655027.1 NC_008196_p31 hypothetical protein phrog_102 endolysin lysis 1 27499 28500
YP_655017.1 NC_008196_p21 hypothetical protein phrog_240 head protein head and packaging 1 22984 23325
YP_655001.1 NC_008196_p5 hypothetical protein phrog_2592 head scaffolding protein head and packaging 1 4452 5045
YP_655057.1 NC_008196_p61 hypothetical protein phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 40711 41073
YP_655022.1 NC_008196_p26 hypothetical protein phrog_411 unknown function unknown function 1 25428 25712
YP_655079.1 NC_008196_p83 hypothetical protein phrog_506 transposase integration and excision 1 48305 49510