| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_008196 |
Definition |
Mycobacterium phage Llij, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
56852 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
100 |
%GC |
61.52 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_655038.1 | NC_008196_p42 | hypothetical protein | phrog_2838 | transcriptional repressor | transcription regulation | -1 | 33501 | 34241 |
| YP_655086.1 | NC_008196_p90 | hypothetical protein | phrog_8604 | unknown function | unknown function | 1 | 51368 | 51970 |
| YP_655073.1 | NC_008196_p77 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 46445 | 46729 |
| YP_655085.1 | NC_008196_p89 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 50685 | 51371 |
| YP_655014.1 | NC_008196_p18 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 17383 | 19920 |
| YP_654997.1 | NC_008196_p1 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 109 | 564 |
| YP_655000.1 | NC_008196_p4 | hypothetical protein | phrog_1522 | head maturation protease | head and packaging | 1 | 3612 | 4367 |
| YP_655090.1 | NC_008196_p94 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 52931 | 53173 |
| YP_655028.1 | NC_008196_p32 | hypothetical protein | phrog_443 | holin | lysis | 1 | 28514 | 28747 |
| YP_655047.1 | NC_008196_p51 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 37238 | 37516 |
| YP_655021.1 | NC_008196_p25 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25080 | 25277 |
| YP_655092.1 | NC_008196_p96 | hypothetical protein | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 53354 | 54793 |
| YP_655067.1 | NC_008196_p71 | hypothetical protein | phrog_2730 | unknown function | unknown function | 1 | 45084 | 45287 |
| YP_655072.1 | NC_008196_p76 | hypothetical protein | phrog_3447 | unknown function | unknown function | 1 | 46236 | 46448 |
| YP_655024.1 | NC_008196_p28 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 25862 | 26002 |
| YP_655055.1 | NC_008196_p59 | hypothetical protein | phrog_2632 | unknown function | unknown function | 1 | 39858 | 40139 |
| YP_655037.1 | NC_008196_p41 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 32792 | 33238 |
| YP_655041.1 | NC_008196_p45 | hypothetical protein | phrog_5253 | unknown function | unknown function | 1 | 35396 | 35695 |
| YP_655029.1 | NC_008196_p33 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 28744 | 29118 |
| YP_655074.1 | NC_008196_p78 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 46722 | 46910 |
| YP_655052.1 | NC_008196_p56 | hypothetical protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 39114 | 39479 |
| YP_655065.1 | NC_008196_p69 | hypothetical protein | phrog_3171 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 43853 | 44827 |
| YP_655018.1 | NC_008196_p22 | hypothetical protein | phrog_2005 | minor tail protein | tail | 1 | 23348 | 23602 |
| YP_655033.1 | NC_008196_p37 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 30485 | 30577 |
| YP_655008.1 | NC_008196_p12 | hypothetical protein | phrog_621 | tail assembly chaperone | tail | 1 | 8549 | 9100 |
| YP_655069.1 | NC_008196_p73 | hypothetical protein | phrog_1573 | DNA methyltransferase | other | 1 | 45475 | 45903 |
| YP_655048.1 | NC_008196_p52 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 37513 | 37860 |
| YP_655045.1 | NC_008196_p49 | hypothetical protein | phrog_3381 | unknown function | unknown function | 1 | 36375 | 36548 |
| YP_655060.1 | NC_008196_p64 | hypothetical protein | phrog_2704 | unknown function | unknown function | 1 | 42013 | 42156 |
| YP_655062.1 | NC_008196_p66 | hypothetical protein | phrog_424 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | 1 | 42302 | 43150 |
| YP_655059.1 | NC_008196_p63 | hypothetical protein | phrog_6938 | unknown function | unknown function | 1 | 41744 | 42013 |
| YP_655031.1 | NC_008196_p35 | hypothetical protein | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 29363 | 30184 |
| YP_655004.1 | NC_008196_p8 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 6460 | 6789 |
| YP_655094.1 | NC_008196_p98 | hypothetical protein | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 54999 | 55622 |
| YP_655025.1 | NC_008196_p29 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26076 | 26309 |
| YP_655034.1 | NC_008196_p38 | hypothetical protein | phrog_3693 | unknown function | unknown function | -1 | 30680 | 30835 |
| YP_655030.1 | NC_008196_p34 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29143 | 29376 |
| YP_655005.1 | NC_008196_p9 | hypothetical protein | phrog_1929 | head-tail connector protein | connector | 1 | 6796 | 7122 |
| YP_655043.1 | NC_008196_p47 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 35993 | 36190 |
| YP_655026.1 | NC_008196_p30 | hypothetical protein | phrog_700 | endolysin | lysis | 1 | 26306 | 27499 |
| YP_655061.1 | NC_008196_p65 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 42153 | 42305 |
| YP_655035.1 | NC_008196_p39 | hypothetical protein | phrog_2437 | unknown function | unknown function | -1 | 30826 | 31026 |
| YP_655013.1 | NC_008196_p17 | hypothetical protein | phrog_732 | minor tail protein | tail | 1 | 16541 | 17386 |
| YP_655002.1 | NC_008196_p6 | hypothetical protein | phrog_267 | major head protein | head and packaging | 1 | 5064 | 5885 |
| YP_655053.1 | NC_008196_p57 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 39479 | 39634 |
| YP_655087.1 | NC_008196_p91 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 52157 | 52321 |
| YP_655063.1 | NC_008196_p67 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 43159 | 43293 |
| YP_655003.1 | NC_008196_p7 | hypothetical protein | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 5894 | 6463 |
| YP_655078.1 | NC_008196_p82 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 48031 | 48237 |
| YP_655095.1 | NC_008196_p99 | hypothetical protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 55622 | 55966 |
| YP_655010.1 | NC_008196_p14 | hypothetical protein | phrog_1942 | tail length tape measure protein | tail | 1 | 9482 | 12994 |
| YP_655007.1 | NC_008196_p11 | hypothetical protein | phrog_476 | major tail protein | tail | 1 | 7626 | 8435 |
| YP_655042.1 | NC_008196_p46 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 35692 | 35907 |
| YP_654998.1 | NC_008196_p2 | hypothetical protein | phrog_9 | terminase large subunit | head and packaging | 1 | 587 | 2224 |
| YP_655093.1 | NC_008196_p97 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 54796 | 55002 |
| YP_655023.1 | NC_008196_p27 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 25719 | 25865 |
| YP_655080.1 | NC_008196_p84 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49624 | 49773 |
| YP_655012.1 | NC_008196_p16 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 14790 | 16499 |
| YP_655071.1 | NC_008196_p75 | hypothetical protein | phrog_3647 | unknown function | unknown function | 1 | 46078 | 46239 |
| YP_655083.1 | NC_008196_p87 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 50129 | 50419 |
| YP_655046.1 | NC_008196_p50 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 36545 | 37129 |
| YP_655091.1 | NC_008196_p95 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 53166 | 53327 |
| YP_655076.1 | NC_008196_p80 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 47508 | 47834 |
| YP_655084.1 | NC_008196_p88 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 50419 | 50688 |
| YP_655006.1 | NC_008196_p10 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 7112 | 7516 |
| YP_655051.1 | NC_008196_p55 | hypothetical protein | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 38833 | 39117 |
| YP_655075.1 | NC_008196_p79 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 46980 | 47351 |
| YP_655019.1 | NC_008196_p23 | hypothetical protein | phrog_2012 | minor tail protein | tail | 1 | 23615 | 24253 |
| YP_655077.1 | NC_008196_p81 | hypothetical protein | phrog_13181 | unknown function | unknown function | 1 | 47831 | 48034 |
| YP_655020.1 | NC_008196_p24 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 24250 | 25074 |
| YP_655089.1 | NC_008196_p93 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 52521 | 52934 |
| YP_655011.1 | NC_008196_p15 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 12995 | 14704 |
| YP_655040.1 | NC_008196_p44 | hypothetical protein | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 34533 | 35399 |
| YP_655056.1 | NC_008196_p60 | hypothetical protein | phrog_3290 | single strand annealing protein | DNA, RNA and nucleotide metabolism | 1 | 40136 | 40714 |
| YP_654999.1 | NC_008196_p3 | hypothetical protein | phrog_104 | portal protein | head and packaging | 1 | 2255 | 3625 |
| YP_655088.1 | NC_008196_p92 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 52327 | 52524 |
| YP_655036.1 | NC_008196_p40 | hypothetical protein | phrog_1 | integrase | integration and excision | 1 | 31422 | 32711 |
| YP_655015.1 | NC_008196_p19 | hypothetical protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19917 | 21803 |
| YP_655064.1 | NC_008196_p68 | hypothetical protein | phrog_3312 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43293 | 43853 |
| YP_655058.1 | NC_008196_p62 | hypothetical protein | phrog_2233 | unknown function | unknown function | 1 | 41070 | 41747 |
| YP_655044.1 | NC_008196_p48 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 36187 | 36378 |
| YP_655016.1 | NC_008196_p20 | hypothetical protein | phrog_2106 | minor tail protein | tail | 1 | 21800 | 22966 |
| YP_655082.1 | NC_008196_p86 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 49936 | 50076 |
| YP_655032.1 | NC_008196_p36 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 30202 | 30492 |
| YP_655050.1 | NC_008196_p54 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 38351 | 38836 |
| YP_655068.1 | NC_008196_p72 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 45284 | 45478 |
| YP_655039.1 | NC_008196_p43 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 34261 | 34473 |
| YP_655070.1 | NC_008196_p74 | hypothetical protein | phrog_2591 | unknown function | unknown function | 1 | 45896 | 46081 |
| YP_655054.1 | NC_008196_p58 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 39631 | 39861 |
| YP_655081.1 | NC_008196_p85 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 49760 | 49939 |
| YP_655009.1 | NC_008196_p13 | hypothetical protein | phrog_15976 | tail assembly chaperone | tail | 1 | 9048 | 9485 |
| YP_655066.1 | NC_008196_p70 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 44824 | 45084 |
| YP_655096.1 | NC_008196_p100 | hypothetical protein | phrog_1271 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 56053 | 56796 |
| YP_655049.1 | NC_008196_p53 | hypothetical protein | phrog_1333 | unknown function | unknown function | 1 | 37860 | 38354 |
| YP_655027.1 | NC_008196_p31 | hypothetical protein | phrog_102 | endolysin | lysis | 1 | 27499 | 28500 |
| YP_655017.1 | NC_008196_p21 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 22984 | 23325 |
| YP_655001.1 | NC_008196_p5 | hypothetical protein | phrog_2592 | head scaffolding protein | head and packaging | 1 | 4452 | 5045 |
| YP_655057.1 | NC_008196_p61 | hypothetical protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 40711 | 41073 |
| YP_655022.1 | NC_008196_p26 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25428 | 25712 |
| YP_655079.1 | NC_008196_p83 | hypothetical protein | phrog_506 | transposase | integration and excision | 1 | 48305 | 49510 |