| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_008199 |
Definition |
Mycobacterium phage Pipefish, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bclasvirinae; Pipefishvirus. |
DB of origin |
REFSEQ |
Length |
69059 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
102 |
%GC |
67.33 |
Number of singletons |
9 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_655310.1 | NC_008199_p33 | protein of an unannotated phage | phrog_356 | minor tail protein | tail | 1 | 32235 | 33617 |
| YP_655316.1 | NC_008199_p39 | protein of an unannotated phage | phrog_282 | unknown function | unknown function | 1 | 36321 | 36920 |
| YP_655343.1 | NC_008199_p66 | protein of an unannotated phage | phrog_982 | unknown function | unknown function | -1 | 56261 | 56527 |
| YP_655284.1 | NC_008199_p7 | protein of an unannotated phage | phrog_6317 | unknown function | unknown function | -1 | 5482 | 5733 |
| YP_655358.1 | NC_008199_p81 | protein of an unannotated phage | phrog_6691 | unknown function | unknown function | -1 | 61776 | 62060 |
| YP_655281.1 | NC_008199_p4 | protein of an unannotated phage | phrog_2302 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | 1 | 1174 | 2256 |
| YP_655289.1 | NC_008199_p12 | protein of an unannotated phage | phrog_859 | portal protein | head and packaging | 1 | 9094 | 11526 |
| YP_655340.1 | NC_008199_p63 | protein of an unannotated phage | phrog_993 | unknown function | unknown function | -1 | 55264 | 55749 |
| YP_655305.1 | NC_008199_p28 | protein of an unannotated phage | phrog_934 | tail length tape measure protein | tail | 1 | 21277 | 27009 |
| YP_655317.1 | NC_008199_p40 | protein of an unannotated phage | phrog_3329 | unknown function | unknown function | 1 | 36917 | 38266 |
| YP_655295.1 | NC_008199_p18 | protein of an unannotated phage | phrog_2272 | unknown function | unknown function | 1 | 15887 | 16348 |
| YP_655303.1 | NC_008199_p26 | protein of an unannotated phage | phrog_5 | tail completion or Neck1 protein | connector | 1 | 20248 | 20661 |
| YP_655300.1 | NC_008199_p23 | protein of an unannotated phage | phrog_783 | head-tail adaptor | connector | 1 | 18603 | 19361 |
| YP_655333.1 | NC_008199_p56 | protein of an unannotated phage | phrog_3892 | unknown function | unknown function | -1 | 48890 | 49225 |
| YP_655297.1 | NC_008199_p20 | protein of an unannotated phage | phrog_2525 | unknown function | unknown function | 1 | 16821 | 17153 |
| YP_655291.1 | NC_008199_p14 | protein of an unannotated phage | phrog_777 | major head protein | head and packaging | 1 | 11892 | 13925 |
| YP_655348.1 | NC_008199_p71 | protein of an unannotated phage | phrog_1016 | unknown function | unknown function | 1 | 58442 | 58660 |
| YP_655326.1 | NC_008199_p49 | protein of an unannotated phage | phrog_102 | endolysin | lysis | 1 | 42928 | 43992 |
| YP_655318.1 | NC_008199_p41 | protein of an unannotated phage | phrog_915 | unknown function | unknown function | 1 | 38289 | 38657 |
| YP_655375.1 | NC_008199_p98 | protein of an unannotated phage | phrog_4825 | unknown function | unknown function | 1 | 67834 | 68007 |
| YP_655294.1 | NC_008199_p17 | protein of an unannotated phage | phrog_565 | holin | lysis | 1 | 15450 | 15884 |
| YP_655319.1 | NC_008199_p42 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 38864 | 38977 |
| YP_655354.1 | NC_008199_p77 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 60323 | 60565 |
| YP_655296.1 | NC_008199_p19 | protein of an unannotated phage | phrog_2344 | unknown function | unknown function | 1 | 16345 | 16824 |
| YP_655377.1 | NC_008199_p100 | protein of an unannotated phage | phrog_6097 | unknown function | unknown function | 1 | 68261 | 68497 |
| YP_655308.1 | NC_008199_p31 | protein of an unannotated phage | phrog_837 | minor tail protein | tail | 1 | 28965 | 30008 |
| YP_655286.1 | NC_008199_p9 | protein of an unannotated phage | phrog_6276 | unknown function | unknown function | -1 | 6443 | 6739 |
| YP_655347.1 | NC_008199_p70 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 58042 | 58410 |
| YP_655361.1 | NC_008199_p84 | protein of an unannotated phage | phrog_6304 | unknown function | unknown function | -1 | 62471 | 62635 |
| YP_655285.1 | NC_008199_p8 | protein of an unannotated phage | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 5730 | 6380 |
| YP_655341.1 | NC_008199_p64 | protein of an unannotated phage | phrog_6735 | unknown function | unknown function | -1 | 55746 | 55898 |
| YP_655367.1 | NC_008199_p90 | protein of an unannotated phage | phrog_6199 | unknown function | unknown function | -1 | 63931 | 64344 |
| YP_655293.1 | NC_008199_p16 | protein of an unannotated phage | phrog_970 | unknown function | unknown function | 1 | 14848 | 15453 |
| YP_655376.1 | NC_008199_p99 | protein of an unannotated phage | phrog_5733 | unknown function | unknown function | 1 | 68019 | 68264 |
| YP_655320.1 | NC_008199_p43 | protein of an unannotated phage | phrog_892 | tail fiber protein | tail | 1 | 38995 | 39405 |
| YP_655373.1 | NC_008199_p96 | protein of an unannotated phage | phrog_1221 | unknown function | unknown function | -1 | 66234 | 67436 |
| YP_655378.1 | NC_008199_p101 | protein of an unannotated phage | phrog_6432 | unknown function | unknown function | 1 | 68488 | 68643 |
| YP_655369.1 | NC_008199_p92 | protein of an unannotated phage | phrog_5411 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 64569 | 64949 |
| YP_655345.1 | NC_008199_p68 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 57039 | 57275 |
| YP_655350.1 | NC_008199_p73 | protein of an unannotated phage | phrog_4938 | unknown function | unknown function | 1 | 58884 | 59048 |
| YP_655301.1 | NC_008199_p24 | protein of an unannotated phage | phrog_810 | unknown function | unknown function | 1 | 19358 | 19879 |
| YP_655335.1 | NC_008199_p58 | protein of an unannotated phage | phrog_6342 | unknown function | unknown function | -1 | 51912 | 52613 |
| YP_655324.1 | NC_008199_p47 | protein of an unannotated phage | phrog_636 | unknown function | unknown function | -1 | 40901 | 41599 |
| YP_655374.1 | NC_008199_p97 | protein of an unannotated phage | phrog_2972 | unknown function | unknown function | -1 | 67420 | 67656 |
| YP_655292.1 | NC_008199_p15 | protein of an unannotated phage | phrog_779 | unknown function | unknown function | 1 | 14024 | 14833 |
| YP_655357.1 | NC_008199_p80 | protein of an unannotated phage | phrog_4974 | unknown function | unknown function | -1 | 61533 | 61721 |
| YP_655321.1 | NC_008199_p44 | protein of an unannotated phage | phrog_2804 | virion structural protein | head and packaging | 1 | 39405 | 40130 |
| YP_655353.1 | NC_008199_p76 | protein of an unannotated phage | phrog_4885 | unknown function | unknown function | 1 | 60060 | 60317 |
| YP_655287.1 | NC_008199_p10 | protein of an unannotated phage | phrog_781 | unknown function | unknown function | 1 | 6844 | 7179 |
| YP_655290.1 | NC_008199_p13 | protein of an unannotated phage | phrog_2069 | unknown function | unknown function | 1 | 11526 | 11732 |
| YP_655279.1 | NC_008199_p2 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 690 | 956 |
| YP_655359.1 | NC_008199_p82 | protein of an unannotated phage | phrog_960 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 62054 | 62383 |
| YP_655315.1 | NC_008199_p38 | protein of an unannotated phage | phrog_282 | unknown function | unknown function | 1 | 35671 | 36324 |
| YP_655282.1 | NC_008199_p5 | protein of an unannotated phage | phrog_2159 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 2253 | 2822 |
| YP_655302.1 | NC_008199_p25 | protein of an unannotated phage | phrog_901 | unknown function | unknown function | 1 | 19890 | 20264 |
| YP_655312.1 | NC_008199_p35 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 34442 | 34816 |
| YP_655280.1 | NC_008199_p3 | protein of an unannotated phage | phrog_6307 | unknown function | unknown function | 1 | 953 | 1177 |
| YP_655365.1 | NC_008199_p88 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 63414 | 63521 |
| YP_655304.1 | NC_008199_p27 | protein of an unannotated phage | phrog_1118 | tail assembly chaperone | tail | 1 | 20661 | 21251 |
| YP_655327.1 | NC_008199_p50 | protein of an unannotated phage | phrog_870 | unknown function | unknown function | -1 | 44062 | 44607 |
| YP_655352.1 | NC_008199_p75 | protein of an unannotated phage | phrog_1031 | unknown function | unknown function | 1 | 59649 | 60053 |
| YP_655332.1 | NC_008199_p55 | protein of an unannotated phage | phrog_6400 | unknown function | unknown function | -1 | 48527 | 48802 |
| YP_655334.1 | NC_008199_p57 | protein of an unannotated phage | phrog_906 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | -1 | 49262 | 51877 |
| YP_655368.1 | NC_008199_p91 | protein of an unannotated phage | phrog_6428 | unknown function | unknown function | -1 | 64357 | 64572 |
| YP_655328.1 | NC_008199_p51 | protein of an unannotated phage | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44656 | 46266 |
| YP_655362.1 | NC_008199_p85 | protein of an unannotated phage | phrog_6460 | unknown function | unknown function | -1 | 62632 | 62802 |
| YP_655360.1 | NC_008199_p83 | protein of an unannotated phage | phrog_4461 | unknown function | unknown function | -1 | 62370 | 62474 |
| YP_655372.1 | NC_008199_p95 | protein of an unannotated phage | phrog_1010 | unknown function | unknown function | -1 | 65672 | 66160 |
| YP_655356.1 | NC_008199_p79 | protein of an unannotated phage | phrog_928 | unknown function | unknown function | 1 | 61041 | 61520 |
| YP_655346.1 | NC_008199_p69 | protein of an unannotated phage | phrog_996 | unknown function | unknown function | 1 | 57341 | 58021 |
| YP_655330.1 | NC_008199_p53 | protein of an unannotated phage | phrog_32917 | unknown function | unknown function | -1 | 46510 | 46734 |
| YP_655322.1 | NC_008199_p45 | protein of an unannotated phage | phrog_597 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 40186 | 40422 |
| YP_655309.1 | NC_008199_p32 | protein of an unannotated phage | phrog_746 | minor tail protein | tail | 1 | 30005 | 32233 |
| YP_655344.1 | NC_008199_p67 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 56524 | 56931 |
| YP_655342.1 | NC_008199_p65 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 55919 | 56236 |
| YP_655307.1 | NC_008199_p30 | protein of an unannotated phage | phrog_838 | unknown function | unknown function | 1 | 27538 | 28968 |
| YP_655370.1 | NC_008199_p93 | protein of an unannotated phage | phrog_6114 | unknown function | unknown function | -1 | 64949 | 65128 |
| YP_655364.1 | NC_008199_p87 | protein of an unannotated phage | phrog_6338 | unknown function | unknown function | -1 | 63128 | 63331 |
| YP_655338.1 | NC_008199_p61 | protein of an unannotated phage | phrog_6936 | unknown function | unknown function | -1 | 54687 | 54824 |
| YP_655299.1 | NC_008199_p22 | protein of an unannotated phage | phrog_6514 | unknown function | unknown function | -1 | 18380 | 18490 |
| YP_655363.1 | NC_008199_p86 | protein of an unannotated phage | phrog_4392 | unknown function | unknown function | -1 | 62799 | 63131 |
| YP_655366.1 | NC_008199_p89 | protein of an unannotated phage | phrog_5355 | unknown function | unknown function | -1 | 63693 | 63854 |
| YP_655371.1 | NC_008199_p94 | protein of an unannotated phage | phrog_6469 | unknown function | unknown function | -1 | 65125 | 65529 |
| YP_655288.1 | NC_008199_p11 | protein of an unannotated phage | phrog_776 | portal protein | head and packaging | 1 | 7209 | 9104 |
| YP_655298.1 | NC_008199_p21 | protein of an unannotated phage | phrog_792 | major tail protein | tail | 1 | 17241 | 18320 |
| YP_655351.1 | NC_008199_p74 | protein of an unannotated phage | phrog_645 | Rnase E | DNA, RNA and nucleotide metabolism | 1 | 59045 | 59644 |
| YP_655323.1 | NC_008199_p46 | protein of an unannotated phage | phrog_955 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 40419 | 40904 |
| YP_655278.1 | NC_008199_p1 | protein of an unannotated phage | phrog_723 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 1 | 693 |
| YP_655314.1 | NC_008199_p37 | protein of an unannotated phage | phrog_948 | unknown function | unknown function | 1 | 35235 | 35660 |
| YP_655325.1 | NC_008199_p48 | protein of an unannotated phage | phrog_700 | endolysin | lysis | 1 | 41704 | 42927 |
| YP_655355.1 | NC_008199_p78 | protein of an unannotated phage | phrog_6229 | unknown function | unknown function | 1 | 60676 | 61011 |
| YP_655349.1 | NC_008199_p72 | protein of an unannotated phage | phrog_6404 | unknown function | unknown function | 1 | 58657 | 58887 |
| YP_655331.1 | NC_008199_p54 | protein of an unannotated phage | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 46731 | 48428 |
| YP_655339.1 | NC_008199_p62 | protein of an unannotated phage | phrog_3025 | unknown function | unknown function | -1 | 54821 | 55267 |
| YP_655313.1 | NC_008199_p36 | protein of an unannotated phage | phrog_240 | head protein | head and packaging | 1 | 34843 | 35226 |
| YP_655329.1 | NC_008199_p52 | protein of an unannotated phage | phrog_7519 | unknown function | unknown function | -1 | 46266 | 46520 |
| YP_655337.1 | NC_008199_p60 | protein of an unannotated phage | phrog_6482 | unknown function | unknown function | -1 | 54415 | 54690 |
| YP_655283.1 | NC_008199_p6 | protein of an unannotated phage | phrog_38 | terminase large subunit | head and packaging | 1 | 2918 | 5341 |
| YP_655336.1 | NC_008199_p59 | protein of an unannotated phage | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 52598 | 54415 |
| YP_655311.1 | NC_008199_p34 | protein of an unannotated phage | phrog_416 | minor tail protein | tail | 1 | 33614 | 34402 |
| YP_655379.1 | NC_008199_p102 | protein of an unannotated phage | phrog_5930 | unknown function | unknown function | 1 | 68708 | 69010 |
| YP_655306.1 | NC_008199_p29 | protein of an unannotated phage | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 27015 | 27509 |