Genomic map of Mycobacterium phage Pipefish (NC_008199)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_008199
Definition
Mycobacterium phage Pipefish, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bclasvirinae; Pipefishvirus.
DB of origin
REFSEQ
Length
69059
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
102
%GC
67.33
Number of singletons
9
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_655310.1 NC_008199_p33 protein of an unannotated phage phrog_356 minor tail protein tail 1 32235 33617
YP_655316.1 NC_008199_p39 protein of an unannotated phage phrog_282 unknown function unknown function 1 36321 36920
YP_655343.1 NC_008199_p66 protein of an unannotated phage phrog_982 unknown function unknown function -1 56261 56527
YP_655284.1 NC_008199_p7 protein of an unannotated phage phrog_6317 unknown function unknown function -1 5482 5733
YP_655358.1 NC_008199_p81 protein of an unannotated phage phrog_6691 unknown function unknown function -1 61776 62060
YP_655281.1 NC_008199_p4 protein of an unannotated phage phrog_2302 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover 1 1174 2256
YP_655289.1 NC_008199_p12 protein of an unannotated phage phrog_859 portal protein head and packaging 1 9094 11526
YP_655340.1 NC_008199_p63 protein of an unannotated phage phrog_993 unknown function unknown function -1 55264 55749
YP_655305.1 NC_008199_p28 protein of an unannotated phage phrog_934 tail length tape measure protein tail 1 21277 27009
YP_655317.1 NC_008199_p40 protein of an unannotated phage phrog_3329 unknown function unknown function 1 36917 38266
YP_655295.1 NC_008199_p18 protein of an unannotated phage phrog_2272 unknown function unknown function 1 15887 16348
YP_655303.1 NC_008199_p26 protein of an unannotated phage phrog_5 tail completion or Neck1 protein connector 1 20248 20661
YP_655300.1 NC_008199_p23 protein of an unannotated phage phrog_783 head-tail adaptor connector 1 18603 19361
YP_655333.1 NC_008199_p56 protein of an unannotated phage phrog_3892 unknown function unknown function -1 48890 49225
YP_655297.1 NC_008199_p20 protein of an unannotated phage phrog_2525 unknown function unknown function 1 16821 17153
YP_655291.1 NC_008199_p14 protein of an unannotated phage phrog_777 major head protein head and packaging 1 11892 13925
YP_655348.1 NC_008199_p71 protein of an unannotated phage phrog_1016 unknown function unknown function 1 58442 58660
YP_655326.1 NC_008199_p49 protein of an unannotated phage phrog_102 endolysin lysis 1 42928 43992
YP_655318.1 NC_008199_p41 protein of an unannotated phage phrog_915 unknown function unknown function 1 38289 38657
YP_655375.1 NC_008199_p98 protein of an unannotated phage phrog_4825 unknown function unknown function 1 67834 68007
YP_655294.1 NC_008199_p17 protein of an unannotated phage phrog_565 holin lysis 1 15450 15884
YP_655319.1 NC_008199_p42 protein of an unannotated phage singleton unknown function unknown function 1 38864 38977
YP_655354.1 NC_008199_p77 protein of an unannotated phage singleton unknown function unknown function -1 60323 60565
YP_655296.1 NC_008199_p19 protein of an unannotated phage phrog_2344 unknown function unknown function 1 16345 16824
YP_655377.1 NC_008199_p100 protein of an unannotated phage phrog_6097 unknown function unknown function 1 68261 68497
YP_655308.1 NC_008199_p31 protein of an unannotated phage phrog_837 minor tail protein tail 1 28965 30008
YP_655286.1 NC_008199_p9 protein of an unannotated phage phrog_6276 unknown function unknown function -1 6443 6739
YP_655347.1 NC_008199_p70 protein of an unannotated phage singleton unknown function unknown function 1 58042 58410
YP_655361.1 NC_008199_p84 protein of an unannotated phage phrog_6304 unknown function unknown function -1 62471 62635
YP_655285.1 NC_008199_p8 protein of an unannotated phage phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 5730 6380
YP_655341.1 NC_008199_p64 protein of an unannotated phage phrog_6735 unknown function unknown function -1 55746 55898
YP_655367.1 NC_008199_p90 protein of an unannotated phage phrog_6199 unknown function unknown function -1 63931 64344
YP_655293.1 NC_008199_p16 protein of an unannotated phage phrog_970 unknown function unknown function 1 14848 15453
YP_655376.1 NC_008199_p99 protein of an unannotated phage phrog_5733 unknown function unknown function 1 68019 68264
YP_655320.1 NC_008199_p43 protein of an unannotated phage phrog_892 tail fiber protein tail 1 38995 39405
YP_655373.1 NC_008199_p96 protein of an unannotated phage phrog_1221 unknown function unknown function -1 66234 67436
YP_655378.1 NC_008199_p101 protein of an unannotated phage phrog_6432 unknown function unknown function 1 68488 68643
YP_655369.1 NC_008199_p92 protein of an unannotated phage phrog_5411 HNH endonuclease DNA, RNA and nucleotide metabolism -1 64569 64949
YP_655345.1 NC_008199_p68 protein of an unannotated phage singleton unknown function unknown function -1 57039 57275
YP_655350.1 NC_008199_p73 protein of an unannotated phage phrog_4938 unknown function unknown function 1 58884 59048
YP_655301.1 NC_008199_p24 protein of an unannotated phage phrog_810 unknown function unknown function 1 19358 19879
YP_655335.1 NC_008199_p58 protein of an unannotated phage phrog_6342 unknown function unknown function -1 51912 52613
YP_655324.1 NC_008199_p47 protein of an unannotated phage phrog_636 unknown function unknown function -1 40901 41599
YP_655374.1 NC_008199_p97 protein of an unannotated phage phrog_2972 unknown function unknown function -1 67420 67656
YP_655292.1 NC_008199_p15 protein of an unannotated phage phrog_779 unknown function unknown function 1 14024 14833
YP_655357.1 NC_008199_p80 protein of an unannotated phage phrog_4974 unknown function unknown function -1 61533 61721
YP_655321.1 NC_008199_p44 protein of an unannotated phage phrog_2804 virion structural protein head and packaging 1 39405 40130
YP_655353.1 NC_008199_p76 protein of an unannotated phage phrog_4885 unknown function unknown function 1 60060 60317
YP_655287.1 NC_008199_p10 protein of an unannotated phage phrog_781 unknown function unknown function 1 6844 7179
YP_655290.1 NC_008199_p13 protein of an unannotated phage phrog_2069 unknown function unknown function 1 11526 11732
YP_655279.1 NC_008199_p2 protein of an unannotated phage singleton unknown function unknown function 1 690 956
YP_655359.1 NC_008199_p82 protein of an unannotated phage phrog_960 HNH endonuclease DNA, RNA and nucleotide metabolism -1 62054 62383
YP_655315.1 NC_008199_p38 protein of an unannotated phage phrog_282 unknown function unknown function 1 35671 36324
YP_655282.1 NC_008199_p5 protein of an unannotated phage phrog_2159 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 2253 2822
YP_655302.1 NC_008199_p25 protein of an unannotated phage phrog_901 unknown function unknown function 1 19890 20264
YP_655312.1 NC_008199_p35 protein of an unannotated phage singleton unknown function unknown function 1 34442 34816
YP_655280.1 NC_008199_p3 protein of an unannotated phage phrog_6307 unknown function unknown function 1 953 1177
YP_655365.1 NC_008199_p88 protein of an unannotated phage singleton unknown function unknown function -1 63414 63521
YP_655304.1 NC_008199_p27 protein of an unannotated phage phrog_1118 tail assembly chaperone tail 1 20661 21251
YP_655327.1 NC_008199_p50 protein of an unannotated phage phrog_870 unknown function unknown function -1 44062 44607
YP_655352.1 NC_008199_p75 protein of an unannotated phage phrog_1031 unknown function unknown function 1 59649 60053
YP_655332.1 NC_008199_p55 protein of an unannotated phage phrog_6400 unknown function unknown function -1 48527 48802
YP_655334.1 NC_008199_p57 protein of an unannotated phage phrog_906 DNA polymerase/primase DNA, RNA and nucleotide metabolism -1 49262 51877
YP_655368.1 NC_008199_p91 protein of an unannotated phage phrog_6428 unknown function unknown function -1 64357 64572
YP_655328.1 NC_008199_p51 protein of an unannotated phage phrog_466 exonuclease DNA, RNA and nucleotide metabolism -1 44656 46266
YP_655362.1 NC_008199_p85 protein of an unannotated phage phrog_6460 unknown function unknown function -1 62632 62802
YP_655360.1 NC_008199_p83 protein of an unannotated phage phrog_4461 unknown function unknown function -1 62370 62474
YP_655372.1 NC_008199_p95 protein of an unannotated phage phrog_1010 unknown function unknown function -1 65672 66160
YP_655356.1 NC_008199_p79 protein of an unannotated phage phrog_928 unknown function unknown function 1 61041 61520
YP_655346.1 NC_008199_p69 protein of an unannotated phage phrog_996 unknown function unknown function 1 57341 58021
YP_655330.1 NC_008199_p53 protein of an unannotated phage phrog_32917 unknown function unknown function -1 46510 46734
YP_655322.1 NC_008199_p45 protein of an unannotated phage phrog_597 DNA binding protein DNA, RNA and nucleotide metabolism -1 40186 40422
YP_655309.1 NC_008199_p32 protein of an unannotated phage phrog_746 minor tail protein tail 1 30005 32233
YP_655344.1 NC_008199_p67 protein of an unannotated phage singleton unknown function unknown function -1 56524 56931
YP_655342.1 NC_008199_p65 protein of an unannotated phage singleton unknown function unknown function -1 55919 56236
YP_655307.1 NC_008199_p30 protein of an unannotated phage phrog_838 unknown function unknown function 1 27538 28968
YP_655370.1 NC_008199_p93 protein of an unannotated phage phrog_6114 unknown function unknown function -1 64949 65128
YP_655364.1 NC_008199_p87 protein of an unannotated phage phrog_6338 unknown function unknown function -1 63128 63331
YP_655338.1 NC_008199_p61 protein of an unannotated phage phrog_6936 unknown function unknown function -1 54687 54824
YP_655299.1 NC_008199_p22 protein of an unannotated phage phrog_6514 unknown function unknown function -1 18380 18490
YP_655363.1 NC_008199_p86 protein of an unannotated phage phrog_4392 unknown function unknown function -1 62799 63131
YP_655366.1 NC_008199_p89 protein of an unannotated phage phrog_5355 unknown function unknown function -1 63693 63854
YP_655371.1 NC_008199_p94 protein of an unannotated phage phrog_6469 unknown function unknown function -1 65125 65529
YP_655288.1 NC_008199_p11 protein of an unannotated phage phrog_776 portal protein head and packaging 1 7209 9104
YP_655298.1 NC_008199_p21 protein of an unannotated phage phrog_792 major tail protein tail 1 17241 18320
YP_655351.1 NC_008199_p74 protein of an unannotated phage phrog_645 Rnase E DNA, RNA and nucleotide metabolism 1 59045 59644
YP_655323.1 NC_008199_p46 protein of an unannotated phage phrog_955 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 40419 40904
YP_655278.1 NC_008199_p1 protein of an unannotated phage phrog_723 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 1 693
YP_655314.1 NC_008199_p37 protein of an unannotated phage phrog_948 unknown function unknown function 1 35235 35660
YP_655325.1 NC_008199_p48 protein of an unannotated phage phrog_700 endolysin lysis 1 41704 42927
YP_655355.1 NC_008199_p78 protein of an unannotated phage phrog_6229 unknown function unknown function 1 60676 61011
YP_655349.1 NC_008199_p72 protein of an unannotated phage phrog_6404 unknown function unknown function 1 58657 58887
YP_655331.1 NC_008199_p54 protein of an unannotated phage phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 46731 48428
YP_655339.1 NC_008199_p62 protein of an unannotated phage phrog_3025 unknown function unknown function -1 54821 55267
YP_655313.1 NC_008199_p36 protein of an unannotated phage phrog_240 head protein head and packaging 1 34843 35226
YP_655329.1 NC_008199_p52 protein of an unannotated phage phrog_7519 unknown function unknown function -1 46266 46520
YP_655337.1 NC_008199_p60 protein of an unannotated phage phrog_6482 unknown function unknown function -1 54415 54690
YP_655283.1 NC_008199_p6 protein of an unannotated phage phrog_38 terminase large subunit head and packaging 1 2918 5341
YP_655336.1 NC_008199_p59 protein of an unannotated phage phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 52598 54415
YP_655311.1 NC_008199_p34 protein of an unannotated phage phrog_416 minor tail protein tail 1 33614 34402
YP_655379.1 NC_008199_p102 protein of an unannotated phage phrog_5930 unknown function unknown function 1 68708 69010
YP_655306.1 NC_008199_p29 protein of an unannotated phage phrog_1492 HNH endonuclease DNA, RNA and nucleotide metabolism -1 27015 27509