Genomic map of Mycobacterium virus Halo (NC_008202)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_008202
Definition
Mycobacterium phage Halo, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Liefievirus.
DB of origin
REFSEQ
Length
42289
Host Name
Mycobacterium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
64
%GC
66.72
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_655566.1 NC_008202_p48 hypothetical protein phrog_7826 unknown function unknown function 1 35889 36134
YP_655582.1 NC_008202_p64 HNHc phrog_3468 unknown function unknown function 1 42017 42154
YP_655543.1 NC_008202_p26 hypothetical protein phrog_8517 unknown function unknown function 1 23625 23819
YP_655580.1 NC_008202_p62 hypothetical protein phrog_7328 unknown function unknown function 1 41407 41649
YP_655570.1 NC_008202_p52 hypothetical protein singleton unknown function unknown function 1 37496 38158
YP_655538.1 NC_008202_p21 hypothetical protein phrog_1736 minor tail protein tail 1 20003 20437
YP_655564.2 NC_008202_p46 hypothetical protein phrog_14897 unknown function unknown function 1 35123 35515
YP_655547.1 NC_008202_p30 hypothetical protein phrog_1177 unknown function unknown function 1 26785 27105
YP_655572.1 NC_008202_p54 hypothetical protein phrog_10006 unknown function unknown function 1 38595 38753
YP_655536.1 NC_008202_p19 hypothetical protein phrog_1697 minor tail protein tail 1 18398 18859
YP_655550.2 NC_008202_p33 repressor phrog_2328 transcriptional repressor transcription regulation -1 28909 29319
YP_655520.1 NC_008202_p3 portal protein phrog_104 portal protein head and packaging 1 1888 3402
YP_655535.2 NC_008202_p18 minor tail protein phrog_110 minor tail protein tail 1 16644 18398
YP_655571.1 NC_008202_p53 hypothetical protein phrog_9043 unknown function unknown function 1 38155 38598
YP_655537.1 NC_008202_p20 minor tail protein phrog_1565 minor tail protein tail 1 18856 19992
YP_655530.1 NC_008202_p13 major tail subunit phrog_117 major tail protein tail 1 9849 10463
YP_655526.1 NC_008202_p9 hypothetical protein phrog_1290 head-tail adaptor connector 1 8309 8806
YP_655548.1 NC_008202_p31 hypothetical protein phrog_798 unknown function unknown function 1 27102 27719
YP_655527.1 NC_008202_p10 hypothetical protein phrog_763 head-tail adaptor connector 1 8806 9162
YP_655546.1 NC_008202_p29 hypothetical protein phrog_7198 holin lysis 1 26430 26780
YP_655544.1 NC_008202_p27 hypothetical protein phrog_880 endolysin lysis 1 23880 25196
YP_655574.2 NC_008202_p56 hypothetical protein phrog_1900 mobile element MPME moron, auxiliary metabolic gene and host takeover 1 38943 39314
YP_655531.1 NC_008202_p14 potential virion protein phrog_1326 tail assembly chaperone tail 1 10564 11459
YP_655575.1 NC_008202_p57 hypothetical protein phrog_7600 unknown function unknown function 1 39247 39624
YP_655519.1 NC_008202_p2 terminase phrog_2 terminase large subunit head and packaging 1 455 1891
YP_655573.1 NC_008202_p55 hypothetical protein singleton unknown function unknown function 1 38750 38896
YP_655557.1 NC_008202_p40 hypothetical protein phrog_7392 unknown function unknown function 1 31419 31769
YP_655569.1 NC_008202_p51 RuvC phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 36909 37499
YP_655556.1 NC_008202_p39 hypothetical protein phrog_7486 unknown function unknown function 1 31270 31419
YP_655552.1 NC_008202_p35 hypothetical protein phrog_5081 unknown function unknown function 1 29747 30145
YP_655581.1 NC_008202_p63 hypothetical protein phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 41673 41999
YP_655579.1 NC_008202_p61 hypothetical protein phrog_658 unknown function unknown function 1 40985 41308
YP_655555.1 NC_008202_p38 hypothetical protein phrog_986 RNA-binding protein DNA, RNA and nucleotide metabolism 1 30923 31273
YP_655553.1 NC_008202_p36 hypothetical protein phrog_549 unknown function unknown function 1 30145 30744
YP_655560.1 NC_008202_p43 RecT-like phrog_4171 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 33005 34393
YP_655525.1 NC_008202_p8 hypothetical protein phrog_3101 unknown function unknown function 1 8076 8297
YP_655554.1 NC_008202_p37 hypothetical protein phrog_10116 unknown function unknown function 1 30744 30926
YP_655576.1 NC_008202_p58 hypothetical protein phrog_11054 unknown function unknown function 1 39681 39965
YP_655551.1 NC_008202_p34 hypothetical protein phrog_7506 recombination directionality factor integration and excision 1 29493 29750
YP_655561.2 NC_008202_p44 hypothetical protein phrog_7227 unknown function unknown function 1 34396 34944
YP_655523.1 NC_008202_p6 hypothetical protein phrog_233 head scaffolding protein head and packaging 1 6514 7056
YP_655540.1 NC_008202_p23 hypothetical protein phrog_7598 unknown function unknown function 1 22845 23165
YP_655562.1 NC_008202_p45 hypothetical protein phrog_17287 unknown function unknown function 1 34941 35159
YP_655558.1 NC_008202_p41 hypothetical protein phrog_6734 unknown function unknown function 1 31753 31905
YP_655541.1 NC_008202_p24 hypothetical protein phrog_8923 unknown function unknown function 1 23168 23350
YP_655542.1 NC_008202_p25 hypothetical protein phrog_9511 unknown function unknown function 1 23350 23625
YP_655518.1 NC_008202_p1 hypothetical protein phrog_1459 terminase small subunit head and packaging 1 43 387
YP_655549.1 NC_008202_p32 integrase phrog_1 integrase integration and excision -1 27716 28912
YP_655568.1 NC_008202_p50 hypothetical protein phrog_7576 unknown function unknown function 1 36472 36912
YP_655577.1 NC_008202_p59 hypothetical protein phrog_5436 unknown function unknown function 1 39962 40759
YP_655565.1 NC_008202_p47 hypothetical protein phrog_15494 unknown function unknown function 1 35512 35901
YP_655524.1 NC_008202_p7 capsid protein phrog_10 major head protein head and packaging 1 7104 8039
YP_655532.1 NC_008202_p15 potential virion protein phrog_1861 unknown function unknown function 1 10564 11073
YP_655533.1 NC_008202_p16 tape measure protein phrog_971 endolysin lysis 1 11459 15472
YP_655539.1 NC_008202_p22 hypothetical protein phrog_7565 minor tail protein tail 1 20437 22830
YP_655567.1 NC_008202_p49 hypothetical protein phrog_2247 unknown function unknown function 1 36131 36475
YP_655545.1 NC_008202_p28 lysin B phrog_102 endolysin lysis 1 25196 26404
YP_655529.1 NC_008202_p12 hypothetical protein phrog_123 tail terminator connector 1 9409 9852
YP_655578.1 NC_008202_p60 hypothetical protein phrog_5505 unknown function unknown function 1 40759 40941
YP_655521.1 NC_008202_p4 hypothetical protein phrog_1752 head maturation protease head and packaging 1 3403 6192
YP_655522.1 NC_008202_p5 hypothetical protein phrog_1757 unknown function unknown function 1 6189 6395
YP_655559.1 NC_008202_p42 RecE phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism 1 31902 32987
YP_655528.1 NC_008202_p11 hypothetical protein phrog_387 neck protein connector 1 9149 9412
YP_655534.1 NC_008202_p17 minor tail protein phrog_106 minor tail protein tail 1 15472 16644