| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_008202 |
Definition |
Mycobacterium phage Halo, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Liefievirus. |
DB of origin |
REFSEQ |
Length |
42289 |
Host Name |
Mycobacterium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
64 |
%GC |
66.72 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_655566.1 | NC_008202_p48 | hypothetical protein | phrog_7826 | unknown function | unknown function | 1 | 35889 | 36134 |
| YP_655582.1 | NC_008202_p64 | HNHc | phrog_3468 | unknown function | unknown function | 1 | 42017 | 42154 |
| YP_655543.1 | NC_008202_p26 | hypothetical protein | phrog_8517 | unknown function | unknown function | 1 | 23625 | 23819 |
| YP_655580.1 | NC_008202_p62 | hypothetical protein | phrog_7328 | unknown function | unknown function | 1 | 41407 | 41649 |
| YP_655570.1 | NC_008202_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37496 | 38158 |
| YP_655538.1 | NC_008202_p21 | hypothetical protein | phrog_1736 | minor tail protein | tail | 1 | 20003 | 20437 |
| YP_655564.2 | NC_008202_p46 | hypothetical protein | phrog_14897 | unknown function | unknown function | 1 | 35123 | 35515 |
| YP_655547.1 | NC_008202_p30 | hypothetical protein | phrog_1177 | unknown function | unknown function | 1 | 26785 | 27105 |
| YP_655572.1 | NC_008202_p54 | hypothetical protein | phrog_10006 | unknown function | unknown function | 1 | 38595 | 38753 |
| YP_655536.1 | NC_008202_p19 | hypothetical protein | phrog_1697 | minor tail protein | tail | 1 | 18398 | 18859 |
| YP_655550.2 | NC_008202_p33 | repressor | phrog_2328 | transcriptional repressor | transcription regulation | -1 | 28909 | 29319 |
| YP_655520.1 | NC_008202_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 1888 | 3402 |
| YP_655535.2 | NC_008202_p18 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 16644 | 18398 |
| YP_655571.1 | NC_008202_p53 | hypothetical protein | phrog_9043 | unknown function | unknown function | 1 | 38155 | 38598 |
| YP_655537.1 | NC_008202_p20 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 18856 | 19992 |
| YP_655530.1 | NC_008202_p13 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 9849 | 10463 |
| YP_655526.1 | NC_008202_p9 | hypothetical protein | phrog_1290 | head-tail adaptor | connector | 1 | 8309 | 8806 |
| YP_655548.1 | NC_008202_p31 | hypothetical protein | phrog_798 | unknown function | unknown function | 1 | 27102 | 27719 |
| YP_655527.1 | NC_008202_p10 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 8806 | 9162 |
| YP_655546.1 | NC_008202_p29 | hypothetical protein | phrog_7198 | holin | lysis | 1 | 26430 | 26780 |
| YP_655544.1 | NC_008202_p27 | hypothetical protein | phrog_880 | endolysin | lysis | 1 | 23880 | 25196 |
| YP_655574.2 | NC_008202_p56 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 38943 | 39314 |
| YP_655531.1 | NC_008202_p14 | potential virion protein | phrog_1326 | tail assembly chaperone | tail | 1 | 10564 | 11459 |
| YP_655575.1 | NC_008202_p57 | hypothetical protein | phrog_7600 | unknown function | unknown function | 1 | 39247 | 39624 |
| YP_655519.1 | NC_008202_p2 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 455 | 1891 |
| YP_655573.1 | NC_008202_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38750 | 38896 |
| YP_655557.1 | NC_008202_p40 | hypothetical protein | phrog_7392 | unknown function | unknown function | 1 | 31419 | 31769 |
| YP_655569.1 | NC_008202_p51 | RuvC | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 36909 | 37499 |
| YP_655556.1 | NC_008202_p39 | hypothetical protein | phrog_7486 | unknown function | unknown function | 1 | 31270 | 31419 |
| YP_655552.1 | NC_008202_p35 | hypothetical protein | phrog_5081 | unknown function | unknown function | 1 | 29747 | 30145 |
| YP_655581.1 | NC_008202_p63 | hypothetical protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41673 | 41999 |
| YP_655579.1 | NC_008202_p61 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 40985 | 41308 |
| YP_655555.1 | NC_008202_p38 | hypothetical protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 30923 | 31273 |
| YP_655553.1 | NC_008202_p36 | hypothetical protein | phrog_549 | unknown function | unknown function | 1 | 30145 | 30744 |
| YP_655560.1 | NC_008202_p43 | RecT-like | phrog_4171 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 33005 | 34393 |
| YP_655525.1 | NC_008202_p8 | hypothetical protein | phrog_3101 | unknown function | unknown function | 1 | 8076 | 8297 |
| YP_655554.1 | NC_008202_p37 | hypothetical protein | phrog_10116 | unknown function | unknown function | 1 | 30744 | 30926 |
| YP_655576.1 | NC_008202_p58 | hypothetical protein | phrog_11054 | unknown function | unknown function | 1 | 39681 | 39965 |
| YP_655551.1 | NC_008202_p34 | hypothetical protein | phrog_7506 | recombination directionality factor | integration and excision | 1 | 29493 | 29750 |
| YP_655561.2 | NC_008202_p44 | hypothetical protein | phrog_7227 | unknown function | unknown function | 1 | 34396 | 34944 |
| YP_655523.1 | NC_008202_p6 | hypothetical protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 6514 | 7056 |
| YP_655540.1 | NC_008202_p23 | hypothetical protein | phrog_7598 | unknown function | unknown function | 1 | 22845 | 23165 |
| YP_655562.1 | NC_008202_p45 | hypothetical protein | phrog_17287 | unknown function | unknown function | 1 | 34941 | 35159 |
| YP_655558.1 | NC_008202_p41 | hypothetical protein | phrog_6734 | unknown function | unknown function | 1 | 31753 | 31905 |
| YP_655541.1 | NC_008202_p24 | hypothetical protein | phrog_8923 | unknown function | unknown function | 1 | 23168 | 23350 |
| YP_655542.1 | NC_008202_p25 | hypothetical protein | phrog_9511 | unknown function | unknown function | 1 | 23350 | 23625 |
| YP_655518.1 | NC_008202_p1 | hypothetical protein | phrog_1459 | terminase small subunit | head and packaging | 1 | 43 | 387 |
| YP_655549.1 | NC_008202_p32 | integrase | phrog_1 | integrase | integration and excision | -1 | 27716 | 28912 |
| YP_655568.1 | NC_008202_p50 | hypothetical protein | phrog_7576 | unknown function | unknown function | 1 | 36472 | 36912 |
| YP_655577.1 | NC_008202_p59 | hypothetical protein | phrog_5436 | unknown function | unknown function | 1 | 39962 | 40759 |
| YP_655565.1 | NC_008202_p47 | hypothetical protein | phrog_15494 | unknown function | unknown function | 1 | 35512 | 35901 |
| YP_655524.1 | NC_008202_p7 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7104 | 8039 |
| YP_655532.1 | NC_008202_p15 | potential virion protein | phrog_1861 | unknown function | unknown function | 1 | 10564 | 11073 |
| YP_655533.1 | NC_008202_p16 | tape measure protein | phrog_971 | endolysin | lysis | 1 | 11459 | 15472 |
| YP_655539.1 | NC_008202_p22 | hypothetical protein | phrog_7565 | minor tail protein | tail | 1 | 20437 | 22830 |
| YP_655567.1 | NC_008202_p49 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 36131 | 36475 |
| YP_655545.1 | NC_008202_p28 | lysin B | phrog_102 | endolysin | lysis | 1 | 25196 | 26404 |
| YP_655529.1 | NC_008202_p12 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 9409 | 9852 |
| YP_655578.1 | NC_008202_p60 | hypothetical protein | phrog_5505 | unknown function | unknown function | 1 | 40759 | 40941 |
| YP_655521.1 | NC_008202_p4 | hypothetical protein | phrog_1752 | head maturation protease | head and packaging | 1 | 3403 | 6192 |
| YP_655522.1 | NC_008202_p5 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 6189 | 6395 |
| YP_655559.1 | NC_008202_p42 | RecE | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 31902 | 32987 |
| YP_655528.1 | NC_008202_p11 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 9149 | 9412 |
| YP_655534.1 | NC_008202_p17 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 15472 | 16644 |