| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_008205 |
Definition |
Mycobacterium phage PMC, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
56692 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
104 |
%GC |
61.41 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_655850.1 | NC_008205_p89 | protein of an unannotated phage | phrog_10901 | unknown function | unknown function | 1 | 50307 | 50582 |
| YP_655782.1 | NC_008205_p21 | protein of an unannotated phage | phrog_240 | head protein | head and packaging | 1 | 22984 | 23325 |
| YP_655856.1 | NC_008205_p95 | protein of an unannotated phage | phrog_1694 | unknown function | unknown function | 1 | 52210 | 52368 |
| YP_655840.1 | NC_008205_p79 | protein of an unannotated phage | phrog_722 | unknown function | unknown function | 1 | 48179 | 48367 |
| YP_655832.1 | NC_008205_p71 | protein of an unannotated phage | phrog_9299 | unknown function | unknown function | 1 | 46372 | 46464 |
| YP_655764.1 | NC_008205_p3 | protein of an unannotated phage | phrog_104 | portal protein | head and packaging | 1 | 2255 | 3625 |
| YP_655818.1 | NC_008205_p57 | protein of an unannotated phage | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 40831 | 41196 |
| YP_655822.1 | NC_008205_p61 | protein of an unannotated phage | phrog_3290 | single strand annealing protein | DNA, RNA and nucleotide metabolism | 1 | 41835 | 42413 |
| YP_655808.1 | NC_008205_p47 | protein of an unannotated phage | phrog_27299 | unknown function | unknown function | 1 | 36653 | 36877 |
| YP_655836.1 | NC_008205_p75 | protein of an unannotated phage | phrog_2591 | unknown function | unknown function | 1 | 47353 | 47538 |
| YP_655863.1 | NC_008205_p102 | protein of an unannotated phage | phrog_3297 | kinase | other | 1 | 55131 | 55604 |
| YP_655854.1 | NC_008205_p93 | protein of an unannotated phage | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 51819 | 52043 |
| YP_655802.1 | NC_008205_p41 | protein of an unannotated phage | phrog_3 | transcriptional repressor | transcription regulation | 1 | 34272 | 34484 |
| YP_655830.1 | NC_008205_p69 | protein of an unannotated phage | phrog_4296 | unknown function | unknown function | 1 | 45796 | 46158 |
| YP_655861.1 | NC_008205_p100 | protein of an unannotated phage | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 53440 | 54876 |
| YP_655769.1 | NC_008205_p8 | protein of an unannotated phage | phrog_763 | head-tail adaptor | connector | 1 | 6460 | 6789 |
| YP_655766.1 | NC_008205_p5 | protein of an unannotated phage | phrog_2592 | head scaffolding protein | head and packaging | 1 | 4452 | 5045 |
| YP_655834.1 | NC_008205_p73 | protein of an unannotated phage | phrog_1943 | unknown function | unknown function | 1 | 46741 | 46935 |
| YP_655774.1 | NC_008205_p13 | protein of an unannotated phage | phrog_15976 | tail assembly chaperone | tail | 1 | 9048 | 9485 |
| YP_655768.1 | NC_008205_p7 | protein of an unannotated phage | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 5894 | 6463 |
| YP_655844.1 | NC_008205_p83 | protein of an unannotated phage | phrog_1901 | unknown function | unknown function | 1 | 49171 | 49362 |
| YP_655816.1 | NC_008205_p55 | protein of an unannotated phage | phrog_2096 | unknown function | unknown function | 1 | 40068 | 40553 |
| YP_655786.1 | NC_008205_p25 | protein of an unannotated phage | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25080 | 25259 |
| YP_655811.1 | NC_008205_p50 | protein of an unannotated phage | phrog_1797 | unknown function | unknown function | 1 | 37468 | 38091 |
| YP_655860.1 | NC_008205_p99 | protein of an unannotated phage | phrog_2057 | unknown function | unknown function | 1 | 53252 | 53413 |
| YP_655855.1 | NC_008205_p94 | protein of an unannotated phage | phrog_1869 | unknown function | unknown function | 1 | 52040 | 52204 |
| YP_655792.1 | NC_008205_p31 | protein of an unannotated phage | phrog_102 | endolysin | lysis | 1 | 27499 | 28500 |
| YP_655776.1 | NC_008205_p15 | protein of an unannotated phage | phrog_106 | minor tail protein | tail | 1 | 12995 | 14704 |
| YP_655763.1 | NC_008205_p2 | protein of an unannotated phage | phrog_9 | terminase large subunit | head and packaging | 1 | 587 | 2224 |
| YP_655849.1 | NC_008205_p88 | protein of an unannotated phage | phrog_2278 | unknown function | unknown function | 1 | 50191 | 50310 |
| YP_655817.1 | NC_008205_p56 | protein of an unannotated phage | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 40550 | 40834 |
| YP_655857.1 | NC_008205_p96 | protein of an unannotated phage | phrog_3813 | unknown function | unknown function | 1 | 52365 | 52622 |
| YP_655805.1 | NC_008205_p44 | protein of an unannotated phage | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 35844 | 36041 |
| YP_655829.1 | NC_008205_p68 | protein of an unannotated phage | phrog_2149 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 44894 | 45799 |
| YP_655791.1 | NC_008205_p30 | protein of an unannotated phage | phrog_700 | endolysin | lysis | 1 | 26306 | 27499 |
| YP_655828.1 | NC_008205_p67 | protein of an unannotated phage | phrog_5500 | unknown function | unknown function | 1 | 44679 | 44897 |
| YP_655765.1 | NC_008205_p4 | protein of an unannotated phage | phrog_1522 | head maturation protease | head and packaging | 1 | 3612 | 4367 |
| YP_655771.1 | NC_008205_p10 | protein of an unannotated phage | phrog_813 | head-tail adaptor | connector | 1 | 7112 | 7516 |
| YP_655784.1 | NC_008205_p23 | protein of an unannotated phage | phrog_2012 | minor tail protein | tail | 1 | 23615 | 24253 |
| YP_655801.1 | NC_008205_p40 | protein of an unannotated phage | phrog_2838 | transcriptional repressor | transcription regulation | -1 | 33512 | 34183 |
| YP_655851.1 | NC_008205_p90 | protein of an unannotated phage | phrog_6816 | unknown function | unknown function | 1 | 50582 | 50824 |
| YP_655789.1 | NC_008205_p28 | protein of an unannotated phage | phrog_1172 | unknown function | unknown function | 1 | 25862 | 26002 |
| YP_655847.1 | NC_008205_p86 | protein of an unannotated phage | phrog_1545 | unknown function | unknown function | 1 | 49831 | 49968 |
| YP_655843.1 | NC_008205_p82 | protein of an unannotated phage | phrog_13181 | unknown function | unknown function | 1 | 48971 | 49174 |
| YP_655864.1 | NC_008205_p103 | protein of an unannotated phage | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 55601 | 56224 |
| YP_655793.1 | NC_008205_p32 | protein of an unannotated phage | phrog_443 | holin | lysis | 1 | 28514 | 28747 |
| YP_655837.1 | NC_008205_p76 | protein of an unannotated phage | phrog_3647 | unknown function | unknown function | 1 | 47535 | 47696 |
| YP_655787.1 | NC_008205_p26 | protein of an unannotated phage | phrog_411 | unknown function | unknown function | 1 | 25428 | 25712 |
| YP_655859.1 | NC_008205_p98 | protein of an unannotated phage | phrog_1385 | unknown function | unknown function | 1 | 53017 | 53259 |
| YP_655842.1 | NC_008205_p81 | protein of an unannotated phage | phrog_10032 | unknown function | unknown function | 1 | 48810 | 48974 |
| YP_655780.1 | NC_008205_p19 | protein of an unannotated phage | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19917 | 21803 |
| YP_655852.1 | NC_008205_p91 | protein of an unannotated phage | phrog_2247 | unknown function | unknown function | 1 | 50821 | 51075 |
| YP_655812.1 | NC_008205_p51 | protein of an unannotated phage | phrog_3416 | unknown function | unknown function | 1 | 38126 | 38875 |
| YP_655778.1 | NC_008205_p17 | protein of an unannotated phage | phrog_732 | minor tail protein | tail | 1 | 16556 | 17386 |
| YP_655813.1 | NC_008205_p52 | protein of an unannotated phage | phrog_1849 | unknown function | unknown function | 1 | 38955 | 39233 |
| YP_655804.1 | NC_008205_p43 | protein of an unannotated phage | phrog_2025 | unknown function | unknown function | 1 | 35543 | 35758 |
| YP_655820.1 | NC_008205_p59 | protein of an unannotated phage | phrog_1834 | unknown function | unknown function | 1 | 41351 | 41581 |
| YP_655770.1 | NC_008205_p9 | protein of an unannotated phage | phrog_1929 | head-tail connector protein | connector | 1 | 6796 | 7122 |
| YP_655841.1 | NC_008205_p80 | protein of an unannotated phage | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 48476 | 48808 |
| YP_655807.1 | NC_008205_p46 | protein of an unannotated phage | phrog_1816 | unknown function | unknown function | 1 | 36465 | 36656 |
| YP_655815.1 | NC_008205_p54 | protein of an unannotated phage | phrog_1333 | unknown function | unknown function | 1 | 39568 | 40071 |
| YP_655781.1 | NC_008205_p20 | protein of an unannotated phage | phrog_2106 | minor tail protein | tail | 1 | 21800 | 22966 |
| YP_655846.1 | NC_008205_p85 | protein of an unannotated phage | phrog_1091 | unknown function | unknown function | 1 | 49652 | 49831 |
| YP_655819.1 | NC_008205_p58 | protein of an unannotated phage | phrog_2078 | unknown function | unknown function | 1 | 41196 | 41351 |
| YP_655762.1 | NC_008205_p1 | protein of an unannotated phage | phrog_226 | minor tail protein | tail | 1 | 109 | 564 |
| YP_655809.1 | NC_008205_p48 | protein of an unannotated phage | phrog_24657 | unknown function | unknown function | 1 | 36874 | 37221 |
| YP_655862.1 | NC_008205_p101 | protein of an unannotated phage | phrog_1693 | unknown function | unknown function | 1 | 54879 | 55091 |
| YP_655858.1 | NC_008205_p97 | protein of an unannotated phage | phrog_1186 | unknown function | unknown function | 1 | 52619 | 53020 |
| YP_655853.1 | NC_008205_p92 | protein of an unannotated phage | phrog_1467 | unknown function | unknown function | 1 | 51072 | 51710 |
| YP_655827.1 | NC_008205_p66 | protein of an unannotated phage | phrog_6193 | unknown function | unknown function | 1 | 44560 | 44682 |
| YP_655803.1 | NC_008205_p42 | protein of an unannotated phage | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 34542 | 35546 |
| YP_655785.1 | NC_008205_p24 | protein of an unannotated phage | phrog_754 | minor tail protein | tail | 1 | 24250 | 25074 |
| YP_655833.1 | NC_008205_p72 | protein of an unannotated phage | phrog_11384 | unknown function | unknown function | 1 | 46457 | 46744 |
| YP_655767.1 | NC_008205_p6 | protein of an unannotated phage | phrog_267 | major head protein | head and packaging | 1 | 5064 | 5885 |
| YP_655797.1 | NC_008205_p36 | protein of an unannotated phage | phrog_1791 | unknown function | unknown function | 1 | 30202 | 30492 |
| YP_655848.1 | NC_008205_p87 | protein of an unannotated phage | phrog_5186 | unknown function | unknown function | 1 | 49965 | 50138 |
| YP_655779.1 | NC_008205_p18 | protein of an unannotated phage | phrog_346 | minor tail protein | tail | 1 | 17383 | 19920 |
| YP_655775.1 | NC_008205_p14 | protein of an unannotated phage | phrog_1942 | tail length tape measure protein | tail | 1 | 9482 | 12994 |
| YP_655806.1 | NC_008205_p45 | protein of an unannotated phage | phrog_2021 | unknown function | unknown function | 1 | 36085 | 36468 |
| YP_655824.1 | NC_008205_p63 | protein of an unannotated phage | phrog_2070 | unknown function | unknown function | 1 | 42817 | 42966 |
| YP_655835.1 | NC_008205_p74 | protein of an unannotated phage | phrog_1573 | DNA methyltransferase | other | 1 | 46932 | 47360 |
| YP_655838.1 | NC_008205_p77 | protein of an unannotated phage | phrog_3447 | unknown function | unknown function | 1 | 47693 | 47905 |
| YP_655798.1 | NC_008205_p37 | protein of an unannotated phage | phrog_1839 | unknown function | unknown function | 1 | 30485 | 30577 |
| YP_655800.1 | NC_008205_p39 | protein of an unannotated phage | phrog_29286 | unknown function | unknown function | -1 | 32792 | 33049 |
| YP_655783.1 | NC_008205_p22 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 23444 | 23602 |
| YP_655773.1 | NC_008205_p12 | protein of an unannotated phage | phrog_621 | tail assembly chaperone | tail | 1 | 8549 | 9100 |
| YP_655799.1 | NC_008205_p38 | protein of an unannotated phage | phrog_1 | integrase | integration and excision | 1 | 31422 | 32711 |
| YP_655772.1 | NC_008205_p11 | protein of an unannotated phage | phrog_476 | major tail protein | tail | 1 | 7626 | 8435 |
| YP_655810.1 | NC_008205_p49 | protein of an unannotated phage | phrog_780 | unknown function | unknown function | 1 | 37214 | 37471 |
| YP_655795.1 | NC_008205_p34 | protein of an unannotated phage | phrog_2004 | unknown function | unknown function | 1 | 29143 | 29376 |
| YP_655845.1 | NC_008205_p84 | protein of an unannotated phage | phrog_6540 | unknown function | unknown function | 1 | 49359 | 49655 |
| YP_655839.1 | NC_008205_p78 | protein of an unannotated phage | phrog_647 | unknown function | unknown function | 1 | 47902 | 48186 |
| YP_655788.1 | NC_008205_p27 | protein of an unannotated phage | phrog_932 | unknown function | unknown function | 1 | 25719 | 25865 |
| YP_655826.1 | NC_008205_p65 | protein of an unannotated phage | phrog_1311 | unknown function | unknown function | 1 | 44396 | 44560 |
| YP_655814.1 | NC_008205_p53 | protein of an unannotated phage | phrog_658 | unknown function | unknown function | 1 | 39230 | 39577 |
| YP_655823.1 | NC_008205_p62 | protein of an unannotated phage | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 42410 | 42766 |
| YP_655821.1 | NC_008205_p60 | protein of an unannotated phage | phrog_2632 | unknown function | unknown function | 1 | 41578 | 41838 |
| YP_655777.1 | NC_008205_p16 | protein of an unannotated phage | phrog_110 | minor tail protein | tail | 1 | 14790 | 16499 |
| YP_655796.1 | NC_008205_p35 | protein of an unannotated phage | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 29363 | 30184 |
| YP_655794.1 | NC_008205_p33 | protein of an unannotated phage | phrog_404 | minor tail protein | tail | 1 | 28744 | 29118 |
| YP_655865.1 | NC_008205_p104 | protein of an unannotated phage | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 56224 | 56550 |
| YP_655831.1 | NC_008205_p70 | protein of an unannotated phage | phrog_2080 | unknown function | unknown function | 1 | 46151 | 46375 |
| YP_655825.1 | NC_008205_p64 | protein of an unannotated phage | phrog_116 | DNA methyltransferase | other | 1 | 42960 | 44387 |
| YP_655790.1 | NC_008205_p29 | protein of an unannotated phage | phrog_747 | unknown function | unknown function | 1 | 26076 | 26309 |