| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_008265 |
Definition |
Clostridium phage phiSM101, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
38092 |
Host Name |
Clostridium perfringens |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
53 |
%GC |
28.12 |
Number of singletons |
13 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_699975.1 | NC_008265_p46 | hypothetical protein | phrog_2655 | excisionase | integration and excision | 1 | 31861 | 32052 |
| YP_699976.1 | NC_008265_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32135 | 32548 |
| YP_699949.1 | NC_008265_p20 | probable sigma factor | phrog_36 | transcriptional regulator | transcription regulation | -1 | 19910 | 20371 |
| YP_699944.1 | NC_008265_p15 | phage terminase, large subunit | phrog_9 | terminase large subunit | head and packaging | -1 | 16105 | 17850 |
| YP_699978.1 | NC_008265_p49 | autolytic lysozyme | phrog_291 | endolysin | lysis | -1 | 32949 | 33977 |
| YP_699934.1 | NC_008265_p5 | hypothetical protein | singleton | unknown function | unknown function | -1 | 9663 | 9866 |
| YP_699963.1 | NC_008265_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25932 | 26096 |
| YP_699965.1 | NC_008265_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 26412 | 26564 |
| YP_699966.1 | NC_008265_p37 | Helix-turn-helix domain protein | phrog_8 | transcriptional regulator | transcription regulation | 1 | 26793 | 27155 |
| YP_699942.1 | NC_008265_p13 | endopeptidase | phrog_94 | head maturation protease | head and packaging | -1 | 13953 | 14684 |
| YP_699950.1 | NC_008265_p21 | hypothetical protein | phrog_1315 | unknown function | unknown function | -1 | 20398 | 20700 |
| YP_699955.1 | NC_008265_p26 | hypothetical protein | phrog_31923 | unknown function | unknown function | -1 | 21903 | 22919 |
| YP_699962.1 | NC_008265_p33 | hypothetical protein | phrog_323 | transcriptional regulator, D5-like | transcription regulation | -1 | 25252 | 25923 |
| YP_699940.1 | NC_008265_p11 | DNA packaging protein | phrog_40 | head-tail adaptor Ad1 | connector | -1 | 12421 | 12720 |
| YP_699967.1 | NC_008265_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27166 | 27285 |
| YP_699979.1 | NC_008265_p50 | modification methylase dpniia | phrog_56 | DNA methyltransferase | other | -1 | 34003 | 34782 |
| YP_699931.1 | NC_008265_p2 | hypothetical protein | phrog_15246 | unknown function | unknown function | -1 | 5087 | 5380 |
| YP_699974.1 | NC_008265_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31539 | 31799 |
| YP_699958.1 | NC_008265_p29 | transcriptional regulator | phrog_10086 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 23261 | 23536 |
| YP_699971.1 | NC_008265_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30385 | 30585 |
| YP_699981.1 | NC_008265_p52 | hypothetical protein | phrog_1193 | hemolysin | other | -1 | 35379 | 35612 |
| YP_699959.1 | NC_008265_p30 | hypothetical protein | phrog_3584 | replication initiation protein | DNA, RNA and nucleotide metabolism | -1 | 23589 | 24332 |
| YP_699952.1 | NC_008265_p23 | hypothetical protein | phrog_23822 | unknown function | unknown function | -1 | 21019 | 21342 |
| YP_699932.1 | NC_008265_p3 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | -1 | 5402 | 6103 |
| YP_699930.1 | NC_008265_p1 | hypothetical protein | phrog_1401 | unknown function | unknown function | -1 | 4633 | 5013 |
| YP_699935.1 | NC_008265_p6 | hypothetical protein | phrog_16952 | RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 9869 | 10243 |
| YP_699968.1 | NC_008265_p39 | hypothetical protein | phrog_18939 | unknown function | unknown function | -1 | 27748 | 28572 |
| YP_699970.1 | NC_008265_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29856 | 30098 |
| YP_699972.1 | NC_008265_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30600 | 30806 |
| YP_699954.1 | NC_008265_p25 | hypothetical protein | singleton | unknown function | unknown function | -1 | 21658 | 21843 |
| YP_699953.1 | NC_008265_p24 | hypothetical protein | phrog_28188 | unknown function | unknown function | -1 | 21381 | 21653 |
| YP_699964.1 | NC_008265_p35 | hypothetical protein | singleton | unknown function | unknown function | -1 | 26228 | 26392 |
| YP_699977.1 | NC_008265_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32562 | 32822 |
| YP_699951.1 | NC_008265_p22 | hypothetical protein | phrog_31395 | unknown function | unknown function | -1 | 20817 | 21026 |
| YP_699947.1 | NC_008265_p18 | hypothetical protein | phrog_17021 | unknown function | unknown function | -1 | 18910 | 19104 |
| YP_699933.1 | NC_008265_p4 | phage tail tape measure protein | phrog_1533 | tail length tape measure protein | tail | -1 | 6108 | 9644 |
| YP_699939.1 | NC_008265_p10 | phage head-tail adaptor | phrog_25 | head closure Hc1 | connector | -1 | 12080 | 12421 |
| YP_699938.1 | NC_008265_p9 | hypothetical protein | phrog_6780 | unknown function | unknown function | -1 | 11687 | 12034 |
| YP_699945.1 | NC_008265_p16 | phage terminase, small subunit, P27 family | phrog_83 | terminase small subunit | head and packaging | -1 | 17858 | 18379 |
| YP_699957.1 | NC_008265_p28 | hypothetical protein | singleton | unknown function | unknown function | -1 | 23090 | 23248 |
| YP_699946.1 | NC_008265_p17 | HNH endonuclease domain protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 18483 | 18917 |
| YP_699973.1 | NC_008265_p44 | hypothetical protein | phrog_2727 | unknown function | unknown function | 1 | 30922 | 31326 |
| YP_699937.1 | NC_008265_p8 | phage protein, HK97family | phrog_5 | tail completion or Neck1 protein | connector | -1 | 11267 | 11626 |
| YP_699941.1 | NC_008265_p12 | phage major capsid protein, HK97 family | phrog_10 | major head protein | head and packaging | -1 | 12738 | 13952 |
| YP_699936.1 | NC_008265_p7 | phage major tail protein, phi13 family subfamily | phrog_88 | major tail protein | tail | -1 | 10263 | 10895 |
| YP_699982.1 | NC_008265_p53 | hypothetical protein | phrog_6130 | unknown function | unknown function | -1 | 35630 | 35878 |
| YP_699948.1 | NC_008265_p19 | hypothetical protein | phrog_16552 | unknown function | unknown function | -1 | 19310 | 19444 |
| YP_699960.1 | NC_008265_p31 | hypothetical protein | phrog_1389 | unknown function | unknown function | -1 | 24519 | 24863 |
| YP_699980.1 | NC_008265_p51 | hypothetical protein | phrog_9492 | unknown function | unknown function | -1 | 34873 | 35358 |
| YP_699969.1 | NC_008265_p40 | ATPase | phrog_691 | partition protein | DNA, RNA and nucleotide metabolism | 1 | 29010 | 29855 |
| YP_699956.1 | NC_008265_p27 | hypothetical protein | phrog_4188 | unknown function | unknown function | -1 | 22926 | 23081 |
| YP_699943.1 | NC_008265_p14 | phage portal protein, HK97 family | phrog_12 | portal protein | head and packaging | -1 | 14684 | 15913 |
| YP_699961.1 | NC_008265_p32 | hypothetical protein | phrog_3497 | unknown function | unknown function | -1 | 24860 | 25252 |