Genomic map of Clostridium phage phiSM101 (NC_008265)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_008265
Definition
Clostridium phage phiSM101, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
38092
Host Name
Clostridium perfringens
Host domain
Bacteria
Is prophage?
undef
Number of proteins
53
%GC
28.12
Number of singletons
13
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_699975.1 NC_008265_p46 hypothetical protein phrog_2655 excisionase integration and excision 1 31861 32052
YP_699976.1 NC_008265_p47 hypothetical protein singleton unknown function unknown function 1 32135 32548
YP_699949.1 NC_008265_p20 probable sigma factor phrog_36 transcriptional regulator transcription regulation -1 19910 20371
YP_699944.1 NC_008265_p15 phage terminase, large subunit phrog_9 terminase large subunit head and packaging -1 16105 17850
YP_699978.1 NC_008265_p49 autolytic lysozyme phrog_291 endolysin lysis -1 32949 33977
YP_699934.1 NC_008265_p5 hypothetical protein singleton unknown function unknown function -1 9663 9866
YP_699963.1 NC_008265_p34 hypothetical protein singleton unknown function unknown function -1 25932 26096
YP_699965.1 NC_008265_p36 hypothetical protein singleton unknown function unknown function -1 26412 26564
YP_699966.1 NC_008265_p37 Helix-turn-helix domain protein phrog_8 transcriptional regulator transcription regulation 1 26793 27155
YP_699942.1 NC_008265_p13 endopeptidase phrog_94 head maturation protease head and packaging -1 13953 14684
YP_699950.1 NC_008265_p21 hypothetical protein phrog_1315 unknown function unknown function -1 20398 20700
YP_699955.1 NC_008265_p26 hypothetical protein phrog_31923 unknown function unknown function -1 21903 22919
YP_699962.1 NC_008265_p33 hypothetical protein phrog_323 transcriptional regulator, D5-like transcription regulation -1 25252 25923
YP_699940.1 NC_008265_p11 DNA packaging protein phrog_40 head-tail adaptor Ad1 connector -1 12421 12720
YP_699967.1 NC_008265_p38 hypothetical protein singleton unknown function unknown function -1 27166 27285
YP_699979.1 NC_008265_p50 modification methylase dpniia phrog_56 DNA methyltransferase other -1 34003 34782
YP_699931.1 NC_008265_p2 hypothetical protein phrog_15246 unknown function unknown function -1 5087 5380
YP_699974.1 NC_008265_p45 hypothetical protein singleton unknown function unknown function 1 31539 31799
YP_699958.1 NC_008265_p29 transcriptional regulator phrog_10086 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 23261 23536
YP_699971.1 NC_008265_p42 hypothetical protein singleton unknown function unknown function 1 30385 30585
YP_699981.1 NC_008265_p52 hypothetical protein phrog_1193 hemolysin other -1 35379 35612
YP_699959.1 NC_008265_p30 hypothetical protein phrog_3584 replication initiation protein DNA, RNA and nucleotide metabolism -1 23589 24332
YP_699952.1 NC_008265_p23 hypothetical protein phrog_23822 unknown function unknown function -1 21019 21342
YP_699932.1 NC_008265_p3 hypothetical protein phrog_33 distal tail protein Dit tail -1 5402 6103
YP_699930.1 NC_008265_p1 hypothetical protein phrog_1401 unknown function unknown function -1 4633 5013
YP_699935.1 NC_008265_p6 hypothetical protein phrog_16952 RNA polymerase DNA, RNA and nucleotide metabolism -1 9869 10243
YP_699968.1 NC_008265_p39 hypothetical protein phrog_18939 unknown function unknown function -1 27748 28572
YP_699970.1 NC_008265_p41 hypothetical protein singleton unknown function unknown function 1 29856 30098
YP_699972.1 NC_008265_p43 hypothetical protein singleton unknown function unknown function 1 30600 30806
YP_699954.1 NC_008265_p25 hypothetical protein singleton unknown function unknown function -1 21658 21843
YP_699953.1 NC_008265_p24 hypothetical protein phrog_28188 unknown function unknown function -1 21381 21653
YP_699964.1 NC_008265_p35 hypothetical protein singleton unknown function unknown function -1 26228 26392
YP_699977.1 NC_008265_p48 hypothetical protein singleton unknown function unknown function 1 32562 32822
YP_699951.1 NC_008265_p22 hypothetical protein phrog_31395 unknown function unknown function -1 20817 21026
YP_699947.1 NC_008265_p18 hypothetical protein phrog_17021 unknown function unknown function -1 18910 19104
YP_699933.1 NC_008265_p4 phage tail tape measure protein phrog_1533 tail length tape measure protein tail -1 6108 9644
YP_699939.1 NC_008265_p10 phage head-tail adaptor phrog_25 head closure Hc1 connector -1 12080 12421
YP_699938.1 NC_008265_p9 hypothetical protein phrog_6780 unknown function unknown function -1 11687 12034
YP_699945.1 NC_008265_p16 phage terminase, small subunit, P27 family phrog_83 terminase small subunit head and packaging -1 17858 18379
YP_699957.1 NC_008265_p28 hypothetical protein singleton unknown function unknown function -1 23090 23248
YP_699946.1 NC_008265_p17 HNH endonuclease domain protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism -1 18483 18917
YP_699973.1 NC_008265_p44 hypothetical protein phrog_2727 unknown function unknown function 1 30922 31326
YP_699937.1 NC_008265_p8 phage protein, HK97family phrog_5 tail completion or Neck1 protein connector -1 11267 11626
YP_699941.1 NC_008265_p12 phage major capsid protein, HK97 family phrog_10 major head protein head and packaging -1 12738 13952
YP_699936.1 NC_008265_p7 phage major tail protein, phi13 family subfamily phrog_88 major tail protein tail -1 10263 10895
YP_699982.1 NC_008265_p53 hypothetical protein phrog_6130 unknown function unknown function -1 35630 35878
YP_699948.1 NC_008265_p19 hypothetical protein phrog_16552 unknown function unknown function -1 19310 19444
YP_699960.1 NC_008265_p31 hypothetical protein phrog_1389 unknown function unknown function -1 24519 24863
YP_699980.1 NC_008265_p51 hypothetical protein phrog_9492 unknown function unknown function -1 34873 35358
YP_699969.1 NC_008265_p40 ATPase phrog_691 partition protein DNA, RNA and nucleotide metabolism 1 29010 29855
YP_699956.1 NC_008265_p27 hypothetical protein phrog_4188 unknown function unknown function -1 22926 23081
YP_699943.1 NC_008265_p14 phage portal protein, HK97 family phrog_12 portal protein head and packaging -1 14684 15913
YP_699961.1 NC_008265_p32 hypothetical protein phrog_3497 unknown function unknown function -1 24860 25252