| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_008363 |
Definition |
Lactococcus phage P008, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus. |
DB of origin |
REFSEQ |
Length |
28538 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
58 |
%GC |
34.68 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_762523.1 | NC_008363_p12 | neck passage structure | phrog_16048 | virion structural protein | head and packaging | 1 | 6836 | 7273 |
| YP_762561.1 | NC_008363_p50 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 25912 | 26031 |
| YP_762569.1 | NC_008363_p58 | hypothetical protein | phrog_6252 | unknown function | unknown function | 1 | 28298 | 28426 |
| YP_762556.1 | NC_008363_p45 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 23577 | 23840 |
| YP_762513.1 | NC_008363_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 779 | 2401 |
| YP_762540.1 | NC_008363_p29 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 18135 | 18389 |
| YP_762530.1 | NC_008363_p19 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 13827 | 14120 |
| YP_762560.1 | NC_008363_p49 | hypothetical protein | phrog_7549 | unknown function | unknown function | -1 | 25162 | 25386 |
| YP_762518.1 | NC_008363_p7 | structural protein | phrog_1393 | minor head protein | head and packaging | 1 | 4559 | 5515 |
| YP_762516.1 | NC_008363_p5 | capsid maturation protein | phrog_80 | head maturation protease | head and packaging | 1 | 3805 | 4341 |
| YP_762555.1 | NC_008363_p44 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 23144 | 23524 |
| YP_762547.1 | NC_008363_p36 | hypothetical protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 20172 | 20597 |
| YP_762522.1 | NC_008363_p11 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6442 | 6807 |
| YP_762537.1 | NC_008363_p26 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 17440 | 17787 |
| YP_762535.1 | NC_008363_p24 | hypothetical protein | phrog_5087 | unknown function | unknown function | -1 | 16720 | 16977 |
| YP_762526.1 | NC_008363_p15 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 8552 | 9064 |
| YP_762559.1 | NC_008363_p48 | hypothetical protein | phrog_9199 | unknown function | unknown function | -1 | 24954 | 25115 |
| YP_762533.1 | NC_008363_p22 | lysin | phrog_670 | endolysin | lysis | 1 | 15285 | 15986 |
| YP_762545.1 | NC_008363_p34 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 19604 | 19732 |
| YP_762546.1 | NC_008363_p35 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 19792 | 20106 |
| YP_762529.1 | NC_008363_p18 | hypothetical protein | phrog_1432 | tail associated lysin | tail | 1 | 12710 | 13837 |
| YP_762541.1 | NC_008363_p30 | hypothetical protein | phrog_3365 | unknown function | unknown function | -1 | 18453 | 18656 |
| YP_762521.1 | NC_008363_p10 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6110 | 6451 |
| YP_762550.1 | NC_008363_p39 | hypothetical protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 21410 | 21769 |
| YP_762542.1 | NC_008363_p31 | hypothetical protein | phrog_22847 | unknown function | unknown function | -1 | 18717 | 18860 |
| YP_762519.1 | NC_008363_p8 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5536 | 5799 |
| YP_762534.1 | NC_008363_p23 | transglycosylase | phrog_3874 | transglycosylase | other | -1 | 16094 | 16630 |
| YP_762557.1 | NC_008363_p46 | hypothetical protein | phrog_3604 | unknown function | unknown function | -1 | 23812 | 24021 |
| YP_762564.1 | NC_008363_p53 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 26761 | 26889 |
| YP_762551.1 | NC_008363_p40 | sak protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 21773 | 22327 |
| YP_762563.1 | NC_008363_p52 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 26443 | 26610 |
| YP_762538.1 | NC_008363_p27 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 17787 | 17954 |
| YP_762543.1 | NC_008363_p32 | hypothetical protein | phrog_3530 | unknown function | unknown function | -1 | 18857 | 19297 |
| YP_762553.1 | NC_008363_p42 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 22637 | 23044 |
| YP_762525.1 | NC_008363_p14 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 8257 | 8532 |
| YP_762539.1 | NC_008363_p28 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 17954 | 18142 |
| YP_762536.1 | NC_008363_p25 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 16998 | 17267 |
| YP_762524.1 | NC_008363_p13 | capsid | phrog_1433 | major tail protein | tail | 1 | 7297 | 8202 |
| YP_762567.1 | NC_008363_p56 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 27501 | 27668 |
| YP_762527.1 | NC_008363_p16 | tape-measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 9064 | 11814 |
| YP_762532.1 | NC_008363_p21 | holin | phrog_1379 | unknown function | unknown function | 1 | 14935 | 15288 |
| YP_762548.1 | NC_008363_p37 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 20676 | 21185 |
| YP_762512.1 | NC_008363_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 254 | 778 |
| YP_762562.1 | NC_008363_p51 | hypothetical protein | phrog_6866 | unknown function | unknown function | 1 | 26169 | 26315 |
| YP_762558.1 | NC_008363_p47 | hypothetical protein | phrog_1284 | unknown function | unknown function | -1 | 24014 | 24910 |
| YP_762514.1 | NC_008363_p3 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2391 | 2675 |
| YP_762531.1 | NC_008363_p20 | base plate protein | phrog_6779 | tail protein | tail | 1 | 14110 | 14913 |
| YP_762549.1 | NC_008363_p38 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 21182 | 21397 |
| YP_762528.1 | NC_008363_p17 | hypothetical protein | phrog_1424 | tail protein | tail | 1 | 11814 | 12710 |
| YP_762554.1 | NC_008363_p43 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 22857 | 23147 |
| YP_762566.1 | NC_008363_p55 | holliday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 27022 | 27504 |
| YP_762544.1 | NC_008363_p33 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 19299 | 19604 |
| YP_762515.1 | NC_008363_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2688 | 3824 |
| YP_762565.1 | NC_008363_p54 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 26894 | 27025 |
| YP_762568.1 | NC_008363_p57 | hypothetical protein | phrog_32191 | unknown function | unknown function | 1 | 27882 | 28004 |
| YP_762517.1 | NC_008363_p6 | structural protein | phrog_1393 | minor head protein | head and packaging | 1 | 4334 | 5515 |
| YP_762520.1 | NC_008363_p9 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 5799 | 6113 |
| YP_762552.1 | NC_008363_p41 | hypothetical protein | phrog_5462 | unknown function | unknown function | -1 | 22324 | 22650 |