Genomic map of Lactococcus virus P008 (NC_008363)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_008363
Definition
Lactococcus phage P008, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus.
DB of origin
REFSEQ
Length
28538
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
58
%GC
34.68
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_762523.1 NC_008363_p12 neck passage structure phrog_16048 virion structural protein head and packaging 1 6836 7273
YP_762561.1 NC_008363_p50 hypothetical protein phrog_2413 unknown function unknown function -1 25912 26031
YP_762569.1 NC_008363_p58 hypothetical protein phrog_6252 unknown function unknown function 1 28298 28426
YP_762556.1 NC_008363_p45 hypothetical protein phrog_1405 unknown function unknown function -1 23577 23840
YP_762513.1 NC_008363_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 779 2401
YP_762540.1 NC_008363_p29 hypothetical protein phrog_1509 unknown function unknown function -1 18135 18389
YP_762530.1 NC_008363_p19 hypothetical protein phrog_1434 unknown function unknown function 1 13827 14120
YP_762560.1 NC_008363_p49 hypothetical protein phrog_7549 unknown function unknown function -1 25162 25386
YP_762518.1 NC_008363_p7 structural protein phrog_1393 minor head protein head and packaging 1 4559 5515
YP_762516.1 NC_008363_p5 capsid maturation protein phrog_80 head maturation protease head and packaging 1 3805 4341
YP_762555.1 NC_008363_p44 hypothetical protein phrog_2228 unknown function unknown function -1 23144 23524
YP_762547.1 NC_008363_p36 hypothetical protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 20172 20597
YP_762522.1 NC_008363_p11 hypothetical protein phrog_1440 virion structural protein head and packaging 1 6442 6807
YP_762537.1 NC_008363_p26 hypothetical protein phrog_1415 unknown function unknown function -1 17440 17787
YP_762535.1 NC_008363_p24 hypothetical protein phrog_5087 unknown function unknown function -1 16720 16977
YP_762526.1 NC_008363_p15 hypothetical protein phrog_1421 virion structural protein head and packaging 1 8552 9064
YP_762559.1 NC_008363_p48 hypothetical protein phrog_9199 unknown function unknown function -1 24954 25115
YP_762533.1 NC_008363_p22 lysin phrog_670 endolysin lysis 1 15285 15986
YP_762545.1 NC_008363_p34 hypothetical protein phrog_1508 unknown function unknown function -1 19604 19732
YP_762546.1 NC_008363_p35 hypothetical protein phrog_1919 unknown function unknown function -1 19792 20106
YP_762529.1 NC_008363_p18 hypothetical protein phrog_1432 tail associated lysin tail 1 12710 13837
YP_762541.1 NC_008363_p30 hypothetical protein phrog_3365 unknown function unknown function -1 18453 18656
YP_762521.1 NC_008363_p10 hypothetical protein phrog_1484 virion structural protein head and packaging 1 6110 6451
YP_762550.1 NC_008363_p39 hypothetical protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 21410 21769
YP_762542.1 NC_008363_p31 hypothetical protein phrog_22847 unknown function unknown function -1 18717 18860
YP_762519.1 NC_008363_p8 hypothetical protein phrog_1428 head-tail connector protein connector 1 5536 5799
YP_762534.1 NC_008363_p23 transglycosylase phrog_3874 transglycosylase other -1 16094 16630
YP_762557.1 NC_008363_p46 hypothetical protein phrog_3604 unknown function unknown function -1 23812 24021
YP_762564.1 NC_008363_p53 hypothetical protein phrog_1952 unknown function unknown function 1 26761 26889
YP_762551.1 NC_008363_p40 sak protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 21773 22327
YP_762563.1 NC_008363_p52 hypothetical protein phrog_1656 unknown function unknown function -1 26443 26610
YP_762538.1 NC_008363_p27 hypothetical protein phrog_1441 unknown function unknown function -1 17787 17954
YP_762543.1 NC_008363_p32 hypothetical protein phrog_3530 unknown function unknown function -1 18857 19297
YP_762553.1 NC_008363_p42 hypothetical protein phrog_1449 unknown function unknown function -1 22637 23044
YP_762525.1 NC_008363_p14 hypothetical protein phrog_1420 virion structural protein head and packaging 1 8257 8532
YP_762539.1 NC_008363_p28 hypothetical protein phrog_1820 unknown function unknown function -1 17954 18142
YP_762536.1 NC_008363_p25 hypothetical protein phrog_1430 unknown function unknown function -1 16998 17267
YP_762524.1 NC_008363_p13 capsid phrog_1433 major tail protein tail 1 7297 8202
YP_762567.1 NC_008363_p56 hypothetical protein phrog_1652 unknown function unknown function 1 27501 27668
YP_762527.1 NC_008363_p16 tape-measure protein phrog_58 tail length tape measure protein tail 1 9064 11814
YP_762532.1 NC_008363_p21 holin phrog_1379 unknown function unknown function 1 14935 15288
YP_762548.1 NC_008363_p37 hypothetical protein phrog_1317 unknown function unknown function -1 20676 21185
YP_762512.1 NC_008363_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 254 778
YP_762562.1 NC_008363_p51 hypothetical protein phrog_6866 unknown function unknown function 1 26169 26315
YP_762558.1 NC_008363_p47 hypothetical protein phrog_1284 unknown function unknown function -1 24014 24910
YP_762514.1 NC_008363_p3 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2391 2675
YP_762531.1 NC_008363_p20 base plate protein phrog_6779 tail protein tail 1 14110 14913
YP_762549.1 NC_008363_p38 hypothetical protein phrog_1295 unknown function unknown function -1 21182 21397
YP_762528.1 NC_008363_p17 hypothetical protein phrog_1424 tail protein tail 1 11814 12710
YP_762554.1 NC_008363_p43 hypothetical protein phrog_1632 unknown function unknown function -1 22857 23147
YP_762566.1 NC_008363_p55 holliday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 27022 27504
YP_762544.1 NC_008363_p33 hypothetical protein phrog_1225 unknown function unknown function -1 19299 19604
YP_762515.1 NC_008363_p4 portal protein phrog_12 portal protein head and packaging 1 2688 3824
YP_762565.1 NC_008363_p54 hypothetical protein phrog_1436 unknown function unknown function 1 26894 27025
YP_762568.1 NC_008363_p57 hypothetical protein phrog_32191 unknown function unknown function 1 27882 28004
YP_762517.1 NC_008363_p6 structural protein phrog_1393 minor head protein head and packaging 1 4334 5515
YP_762520.1 NC_008363_p9 hypothetical protein phrog_1429 virion structural protein head and packaging 1 5799 6113
YP_762552.1 NC_008363_p41 hypothetical protein phrog_5462 unknown function unknown function -1 22324 22650