| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_008367 |
Definition |
Phormidium phage Pf-WMP4, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae. |
DB of origin |
REFSEQ |
Length |
40938 |
Host Name |
Phormidium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
45 |
%GC |
51.8 |
Number of singletons |
30 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_762637.1 | NC_008367_p7 | PfWMP4_07 | singleton | unknown function | unknown function | 1 | 4026 | 5000 |
| YP_762649.1 | NC_008367_p19 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 10336 | 12228 |
| YP_762669.1 | NC_008367_p39 | PfWMP4_39 | phrog_332 | head-tail adaptor | connector | -1 | 34318 | 36243 |
| YP_762671.1 | NC_008367_p41 | PfWMP4_41 | singleton | unknown function | unknown function | -1 | 38001 | 38513 |
| YP_762652.1 | NC_008367_p22 | PfWMP4_22 | singleton | unknown function | unknown function | 1 | 13172 | 13774 |
| YP_762664.1 | NC_008367_p34 | PfWMP4_34 | singleton | unknown function | unknown function | -1 | 27480 | 28682 |
| YP_762635.1 | NC_008367_p5 | PfWMP4_05 | singleton | unknown function | unknown function | 1 | 3240 | 3422 |
| YP_762663.1 | NC_008367_p33 | PfWMP4_33 | phrog_21656 | peptidase | other | -1 | 24439 | 27480 |
| YP_762672.1 | NC_008367_p42 | PfWMP4_42 | singleton | unknown function | unknown function | -1 | 38531 | 38965 |
| YP_762655.1 | NC_008367_p25 | PfWMP4_25 | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | 1 | 14439 | 15296 |
| YP_762670.1 | NC_008367_p40 | PfWMP4_40 | phrog_38 | terminase large subunit | head and packaging | -1 | 36243 | 37988 |
| YP_762633.1 | NC_008367_p3 | PfWMP4_03 | singleton | unknown function | unknown function | 1 | 826 | 1305 |
| YP_762650.1 | NC_008367_p20 | PfWMP4_20 | singleton | unknown function | unknown function | 1 | 12225 | 12512 |
| YP_762656.1 | NC_008367_p26 | PfWMP4_26 | singleton | unknown function | unknown function | 1 | 15293 | 15487 |
| YP_762675.1 | NC_008367_p45 | PfWMP4_45 | singleton | unknown function | unknown function | -1 | 40595 | 40765 |
| YP_762662.1 | NC_008367_p32 | PfWMP4_32 | phrog_832 | RNA polymerase ADP-ribosylase | DNA, RNA and nucleotide metabolism | -1 | 20060 | 24439 |
| YP_762667.1 | NC_008367_p37 | PfWMP4_37 | phrog_267 | major head protein | head and packaging | -1 | 32477 | 33502 |
| YP_762674.1 | NC_008367_p44 | PfWMP4_44 | singleton | unknown function | unknown function | -1 | 40332 | 40598 |
| YP_762643.1 | NC_008367_p13 | PfWMP4_13 | singleton | unknown function | unknown function | 1 | 8527 | 8688 |
| YP_762661.1 | NC_008367_p31 | PfWMP4_31 | phrog_19395 | tail fiber protein; host specificity | tail | -1 | 16920 | 20063 |
| YP_762636.1 | NC_008367_p6 | PfWMP4_06 | phrog_6355 | unknown function | unknown function | 1 | 3485 | 3799 |
| YP_762653.1 | NC_008367_p23 | PfWMP4_23 | singleton | unknown function | unknown function | 1 | 13815 | 14114 |
| YP_762645.1 | NC_008367_p15 | PfWMP4_15 | singleton | unknown function | unknown function | 1 | 8885 | 9190 |
| YP_762657.1 | NC_008367_p27 | PfWMP4_27 | singleton | unknown function | unknown function | 1 | 15504 | 15683 |
| YP_762634.1 | NC_008367_p4 | PfWMP4_04 | singleton | unknown function | unknown function | 1 | 1426 | 2055 |
| YP_762665.1 | NC_008367_p35 | PfWMP4_35 | phrog_21185 | tail protein | tail | -1 | 28685 | 31723 |
| YP_762668.1 | NC_008367_p38 | PfWMP4_38 | phrog_19777 | head scaffolding protein | head and packaging | -1 | 33530 | 34321 |
| YP_762654.1 | NC_008367_p24 | PfWMP4_24 | singleton | unknown function | unknown function | 1 | 14111 | 14437 |
| YP_762651.1 | NC_008367_p21 | PfWMP4_21 | singleton | unknown function | unknown function | 1 | 12831 | 13010 |
| YP_762640.1 | NC_008367_p10 | PfWMP4_10 | phrog_531 | Rnase H | DNA, RNA and nucleotide metabolism | 1 | 5977 | 6480 |
| YP_762641.1 | NC_008367_p11 | PfWMP4_11 | singleton | unknown function | unknown function | 1 | 6474 | 6671 |
| YP_762631.1 | NC_008367_p1 | PfWMP4_01 | singleton | unknown function | unknown function | 1 | 251 | 409 |
| YP_762644.1 | NC_008367_p14 | PfWMP4_14 | singleton | unknown function | unknown function | 1 | 8685 | 8888 |
| YP_762638.1 | NC_008367_p8 | PfWMP4_08 | singleton | unknown function | unknown function | 1 | 5185 | 5472 |
| YP_762639.1 | NC_008367_p9 | PfWMP4_09 | singleton | unknown function | unknown function | 1 | 5457 | 5984 |
| YP_762646.1 | NC_008367_p16 | PfWMP4_16 | singleton | unknown function | unknown function | 1 | 9192 | 9452 |
| YP_762632.1 | NC_008367_p2 | PfWMP4_02 | singleton | unknown function | unknown function | 1 | 476 | 739 |
| YP_762673.1 | NC_008367_p43 | PfWMP4_43 | singleton | unknown function | unknown function | -1 | 39274 | 40125 |
| YP_762660.1 | NC_008367_p30 | PfWMP4_30 | singleton | unknown function | unknown function | -1 | 16588 | 16920 |
| YP_762647.1 | NC_008367_p17 | PfWMP4_17 | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9418 | 9879 |
| YP_762666.1 | NC_008367_p36 | PfWMP4_36 | phrog_10775 | tail protein | tail | -1 | 31720 | 32355 |
| YP_762658.1 | NC_008367_p28 | PfWMP4_28 | singleton | unknown function | unknown function | 1 | 15795 | 16100 |
| YP_762659.1 | NC_008367_p29 | PfWMP4_29 | singleton | unknown function | unknown function | 1 | 16410 | 16532 |
| YP_762642.1 | NC_008367_p12 | DNA primase/helicae | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 7076 | 8530 |
| YP_762648.1 | NC_008367_p18 | PfWMP4_18 | singleton | unknown function | unknown function | 1 | 9876 | 10358 |