Genomic map of Lactococcus virus jj50 (NC_008371)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_008371
Definition
Lactococcus phage jj50, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus.
DB of origin
REFSEQ
Length
27453
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
49
%GC
34.94
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_764329.1 NC_008371_p15 hypothetical protein phrog_1424 tail protein tail 1 11567 12463
YP_764342.1 NC_008371_p28 hypothetical protein phrog_1083 unknown function unknown function -1 18169 18525
YP_764338.1 NC_008371_p24 hypothetical protein phrog_1509 unknown function unknown function -1 17150 17407
YP_764333.1 NC_008371_p19 holin phrog_1379 unknown function unknown function 1 14679 15032
YP_764344.1 NC_008371_p30 hypothetical protein phrog_1919 unknown function unknown function -1 18831 19148
YP_764320.1 NC_008371_p6 structural protein phrog_1393 minor head protein head and packaging 1 4321 5523
YP_764349.1 NC_008371_p35 hypothetical protein phrog_5462 unknown function unknown function -1 20951 21247
YP_764321.1 NC_008371_p7 structural protein phrog_1428 head-tail connector protein connector 1 5544 5807
YP_764345.1 NC_008371_p31 hypothetical protein phrog_1317 unknown function unknown function -1 19231 19740
YP_764362.1 NC_008371_p48 Holliday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 25727 26209
YP_764328.1 NC_008371_p14 tail tape measure phrog_58 tail length tape measure protein tail 1 8568 11567
YP_764346.1 NC_008371_p32 hypothetical protein phrog_1295 unknown function unknown function -1 19737 19952
YP_764323.1 NC_008371_p9 structural protein singleton unknown function unknown function 1 6245 6448
YP_764327.1 NC_008371_p13 hypothetical protein phrog_1421 virion structural protein head and packaging 1 8056 8568
YP_764318.1 NC_008371_p4 portal protein phrog_12 portal protein head and packaging 1 2696 3832
YP_764357.1 NC_008371_p43 hypothetical protein phrog_7915 unknown function unknown function -1 23850 24530
YP_764350.1 NC_008371_p36 hypothetical protein phrog_6484 unknown function unknown function -1 21305 21535
YP_764355.1 NC_008371_p41 hypothetical protein phrog_3604 unknown function unknown function -1 22705 22884
YP_764360.1 NC_008371_p46 hypothetical protein phrog_1952 unknown function unknown function 1 25466 25594
YP_764340.1 NC_008371_p26 hypothetical protein phrog_1508 unknown function unknown function -1 17857 17982
YP_764322.1 NC_008371_p8 structural protein phrog_1429 virion structural protein head and packaging 1 5807 6121
YP_764315.1 NC_008371_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 262 786
YP_764347.1 NC_008371_p33 hypothetical protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 19968 20363
YP_764325.1 NC_008371_p11 major tail structural protein phrog_1433 major tail protein tail 1 6817 7722
YP_764334.1 NC_008371_p20 lysin phrog_670 endolysin lysis 1 15029 15790
YP_764359.1 NC_008371_p45 hypothetical protein phrog_1656 unknown function unknown function -1 25148 25336
YP_764348.1 NC_008371_p34 hypothetical protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 20406 20975
YP_764331.1 NC_008371_p17 hypothetical protein phrog_1434 unknown function unknown function 1 13580 13873
YP_764324.1 NC_008371_p10 structural protein phrog_1440 virion structural protein head and packaging 1 6418 6804
YP_764341.1 NC_008371_p27 hypothetical protein phrog_3002 unknown function unknown function -1 17973 18275
YP_764361.1 NC_008371_p47 hypothetical protein phrog_1436 unknown function unknown function 1 25599 25730
YP_764335.1 NC_008371_p21 hypothetical protein phrog_1430 unknown function unknown function -1 16177 16443
YP_764352.1 NC_008371_p38 hypothetical protein phrog_1632 unknown function unknown function -1 21749 22036
YP_764351.1 NC_008371_p37 hypothetical protein phrog_1449 unknown function unknown function -1 21532 21933
YP_764326.1 NC_008371_p12 hypothetical protein phrog_1420 virion structural protein head and packaging 1 7761 8036
YP_764337.1 NC_008371_p23 hypothetical protein phrog_1441 unknown function unknown function -1 16963 17199
YP_764336.1 NC_008371_p22 hypothetical protein phrog_1415 unknown function unknown function -1 16616 16963
YP_764354.1 NC_008371_p40 hypothetical protein phrog_1405 unknown function unknown function -1 22476 22742
YP_764332.1 NC_008371_p18 receptor binding protein phrog_1630 receptor binding tail protein tail 1 13863 14657
YP_764316.1 NC_008371_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 787 2409
YP_764343.1 NC_008371_p29 hypothetical protein phrog_1825 DNA methyltransferase other -1 18548 18793
YP_764358.1 NC_008371_p44 hypothetical protein phrog_24018 unknown function unknown function -1 24968 25147
YP_764317.1 NC_008371_p3 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2399 2683
YP_764319.1 NC_008371_p5 protease phrog_80 head maturation protease head and packaging 1 3813 4349
YP_764356.1 NC_008371_p42 DNA polymerase subunit phrog_1284 unknown function unknown function -1 22881 23831
YP_764339.1 NC_008371_p25 hypothetical protein phrog_1225 unknown function unknown function -1 17471 17857
YP_764363.1 NC_008371_p49 hypothetical protein phrog_1652 unknown function unknown function 1 26206 26373
YP_764330.1 NC_008371_p16 hypothetical protein phrog_1432 tail associated lysin tail 1 12463 13590
YP_764353.1 NC_008371_p39 hypothetical protein phrog_2228 unknown function unknown function -1 22033 22419