| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_008371 |
Definition |
Lactococcus phage jj50, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus. |
DB of origin |
REFSEQ |
Length |
27453 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
49 |
%GC |
34.94 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_764329.1 | NC_008371_p15 | hypothetical protein | phrog_1424 | tail protein | tail | 1 | 11567 | 12463 |
| YP_764342.1 | NC_008371_p28 | hypothetical protein | phrog_1083 | unknown function | unknown function | -1 | 18169 | 18525 |
| YP_764338.1 | NC_008371_p24 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 17150 | 17407 |
| YP_764333.1 | NC_008371_p19 | holin | phrog_1379 | unknown function | unknown function | 1 | 14679 | 15032 |
| YP_764344.1 | NC_008371_p30 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 18831 | 19148 |
| YP_764320.1 | NC_008371_p6 | structural protein | phrog_1393 | minor head protein | head and packaging | 1 | 4321 | 5523 |
| YP_764349.1 | NC_008371_p35 | hypothetical protein | phrog_5462 | unknown function | unknown function | -1 | 20951 | 21247 |
| YP_764321.1 | NC_008371_p7 | structural protein | phrog_1428 | head-tail connector protein | connector | 1 | 5544 | 5807 |
| YP_764345.1 | NC_008371_p31 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 19231 | 19740 |
| YP_764362.1 | NC_008371_p48 | Holliday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 25727 | 26209 |
| YP_764328.1 | NC_008371_p14 | tail tape measure | phrog_58 | tail length tape measure protein | tail | 1 | 8568 | 11567 |
| YP_764346.1 | NC_008371_p32 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 19737 | 19952 |
| YP_764323.1 | NC_008371_p9 | structural protein | singleton | unknown function | unknown function | 1 | 6245 | 6448 |
| YP_764327.1 | NC_008371_p13 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 8056 | 8568 |
| YP_764318.1 | NC_008371_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2696 | 3832 |
| YP_764357.1 | NC_008371_p43 | hypothetical protein | phrog_7915 | unknown function | unknown function | -1 | 23850 | 24530 |
| YP_764350.1 | NC_008371_p36 | hypothetical protein | phrog_6484 | unknown function | unknown function | -1 | 21305 | 21535 |
| YP_764355.1 | NC_008371_p41 | hypothetical protein | phrog_3604 | unknown function | unknown function | -1 | 22705 | 22884 |
| YP_764360.1 | NC_008371_p46 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 25466 | 25594 |
| YP_764340.1 | NC_008371_p26 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 17857 | 17982 |
| YP_764322.1 | NC_008371_p8 | structural protein | phrog_1429 | virion structural protein | head and packaging | 1 | 5807 | 6121 |
| YP_764315.1 | NC_008371_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 262 | 786 |
| YP_764347.1 | NC_008371_p33 | hypothetical protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 19968 | 20363 |
| YP_764325.1 | NC_008371_p11 | major tail structural protein | phrog_1433 | major tail protein | tail | 1 | 6817 | 7722 |
| YP_764334.1 | NC_008371_p20 | lysin | phrog_670 | endolysin | lysis | 1 | 15029 | 15790 |
| YP_764359.1 | NC_008371_p45 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 25148 | 25336 |
| YP_764348.1 | NC_008371_p34 | hypothetical protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 20406 | 20975 |
| YP_764331.1 | NC_008371_p17 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 13580 | 13873 |
| YP_764324.1 | NC_008371_p10 | structural protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6418 | 6804 |
| YP_764341.1 | NC_008371_p27 | hypothetical protein | phrog_3002 | unknown function | unknown function | -1 | 17973 | 18275 |
| YP_764361.1 | NC_008371_p47 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 25599 | 25730 |
| YP_764335.1 | NC_008371_p21 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 16177 | 16443 |
| YP_764352.1 | NC_008371_p38 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 21749 | 22036 |
| YP_764351.1 | NC_008371_p37 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 21532 | 21933 |
| YP_764326.1 | NC_008371_p12 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 7761 | 8036 |
| YP_764337.1 | NC_008371_p23 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 16963 | 17199 |
| YP_764336.1 | NC_008371_p22 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 16616 | 16963 |
| YP_764354.1 | NC_008371_p40 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 22476 | 22742 |
| YP_764332.1 | NC_008371_p18 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 13863 | 14657 |
| YP_764316.1 | NC_008371_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 787 | 2409 |
| YP_764343.1 | NC_008371_p29 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 18548 | 18793 |
| YP_764358.1 | NC_008371_p44 | hypothetical protein | phrog_24018 | unknown function | unknown function | -1 | 24968 | 25147 |
| YP_764317.1 | NC_008371_p3 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2399 | 2683 |
| YP_764319.1 | NC_008371_p5 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 3813 | 4349 |
| YP_764356.1 | NC_008371_p42 | DNA polymerase subunit | phrog_1284 | unknown function | unknown function | -1 | 22881 | 23831 |
| YP_764339.1 | NC_008371_p25 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 17471 | 17857 |
| YP_764363.1 | NC_008371_p49 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 26206 | 26373 |
| YP_764330.1 | NC_008371_p16 | hypothetical protein | phrog_1432 | tail associated lysin | tail | 1 | 12463 | 13590 |
| YP_764353.1 | NC_008371_p39 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 22033 | 22419 |