Genomic map of Lactococcus virus jj50 (NC_008371)

functional categories (each PHROG annotation is associated to a category)             Notes   
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG

More about this genome

Lactococcus phage jj50, complete genome.
Molecule type
Genome structure
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus.
DB of origin
Host Name
Lactococcus lactis
Host domain
Is prophage?
Number of proteins
Number of singletons
Number of paralogs

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_764329.1 NC_008371_p15 hypothetical protein phrog_1424 tail protein tail 1 11567 12463
YP_764342.1 NC_008371_p28 hypothetical protein phrog_1083 unknown function unknown function -1 18169 18525
YP_764338.1 NC_008371_p24 hypothetical protein phrog_1509 unknown function unknown function -1 17150 17407
YP_764333.1 NC_008371_p19 holin phrog_1379 unknown function unknown function 1 14679 15032
YP_764344.1 NC_008371_p30 hypothetical protein phrog_1919 unknown function unknown function -1 18831 19148
YP_764320.1 NC_008371_p6 structural protein phrog_1393 minor head protein head and packaging 1 4321 5523
YP_764349.1 NC_008371_p35 hypothetical protein phrog_5462 unknown function unknown function -1 20951 21247
YP_764321.1 NC_008371_p7 structural protein phrog_1428 head-tail connector protein connector 1 5544 5807
YP_764345.1 NC_008371_p31 hypothetical protein phrog_1317 unknown function unknown function -1 19231 19740
YP_764362.1 NC_008371_p48 Holliday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 25727 26209
YP_764328.1 NC_008371_p14 tail tape measure phrog_58 tail length tape measure protein tail 1 8568 11567
YP_764346.1 NC_008371_p32 hypothetical protein phrog_1295 unknown function unknown function -1 19737 19952
YP_764323.1 NC_008371_p9 structural protein singleton unknown function unknown function 1 6245 6448
YP_764327.1 NC_008371_p13 hypothetical protein phrog_1421 virion structural protein head and packaging 1 8056 8568
YP_764318.1 NC_008371_p4 portal protein phrog_12 portal protein head and packaging 1 2696 3832
YP_764357.1 NC_008371_p43 hypothetical protein phrog_7915 unknown function unknown function -1 23850 24530
YP_764350.1 NC_008371_p36 hypothetical protein phrog_6484 unknown function unknown function -1 21305 21535
YP_764355.1 NC_008371_p41 hypothetical protein phrog_3604 unknown function unknown function -1 22705 22884
YP_764360.1 NC_008371_p46 hypothetical protein phrog_1952 unknown function unknown function 1 25466 25594
YP_764340.1 NC_008371_p26 hypothetical protein phrog_1508 unknown function unknown function -1 17857 17982
YP_764322.1 NC_008371_p8 structural protein phrog_1429 virion structural protein head and packaging 1 5807 6121
YP_764315.1 NC_008371_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 262 786
YP_764347.1 NC_008371_p33 hypothetical protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 19968 20363
YP_764325.1 NC_008371_p11 major tail structural protein phrog_1433 major tail protein tail 1 6817 7722
YP_764334.1 NC_008371_p20 lysin phrog_670 endolysin lysis 1 15029 15790
YP_764359.1 NC_008371_p45 hypothetical protein phrog_1656 unknown function unknown function -1 25148 25336
YP_764348.1 NC_008371_p34 hypothetical protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 20406 20975
YP_764331.1 NC_008371_p17 hypothetical protein phrog_1434 unknown function unknown function 1 13580 13873
YP_764324.1 NC_008371_p10 structural protein phrog_1440 virion structural protein head and packaging 1 6418 6804
YP_764341.1 NC_008371_p27 hypothetical protein phrog_3002 unknown function unknown function -1 17973 18275
YP_764361.1 NC_008371_p47 hypothetical protein phrog_1436 unknown function unknown function 1 25599 25730
YP_764335.1 NC_008371_p21 hypothetical protein phrog_1430 unknown function unknown function -1 16177 16443
YP_764352.1 NC_008371_p38 hypothetical protein phrog_1632 unknown function unknown function -1 21749 22036
YP_764351.1 NC_008371_p37 hypothetical protein phrog_1449 unknown function unknown function -1 21532 21933
YP_764326.1 NC_008371_p12 hypothetical protein phrog_1420 virion structural protein head and packaging 1 7761 8036
YP_764337.1 NC_008371_p23 hypothetical protein phrog_1441 unknown function unknown function -1 16963 17199
YP_764336.1 NC_008371_p22 hypothetical protein phrog_1415 unknown function unknown function -1 16616 16963
YP_764354.1 NC_008371_p40 hypothetical protein phrog_1405 unknown function unknown function -1 22476 22742
YP_764332.1 NC_008371_p18 receptor binding protein phrog_1630 receptor binding tail protein tail 1 13863 14657
YP_764316.1 NC_008371_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 787 2409
YP_764343.1 NC_008371_p29 hypothetical protein phrog_1825 DNA methyltransferase other -1 18548 18793
YP_764358.1 NC_008371_p44 hypothetical protein phrog_24018 unknown function unknown function -1 24968 25147
YP_764317.1 NC_008371_p3 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2399 2683
YP_764319.1 NC_008371_p5 protease phrog_80 head maturation protease head and packaging 1 3813 4349
YP_764356.1 NC_008371_p42 DNA polymerase subunit phrog_1284 unknown function unknown function -1 22881 23831
YP_764339.1 NC_008371_p25 hypothetical protein phrog_1225 unknown function unknown function -1 17471 17857
YP_764363.1 NC_008371_p49 hypothetical protein phrog_1652 unknown function unknown function 1 26206 26373
YP_764330.1 NC_008371_p16 hypothetical protein phrog_1432 tail associated lysin tail 1 12463 13590
YP_764353.1 NC_008371_p39 hypothetical protein phrog_2228 unknown function unknown function -1 22033 22419