| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_008583 |
Definition |
Staphylococcus phage phiNM1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus. |
DB of origin |
REFSEQ |
Length |
43128 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
64 |
%GC |
34.15 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_873980.1 | NC_008583_p31 | hypothetical protein | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 14727 | 15263 |
| YP_873991.1 | NC_008583_p42 | hypothetical protein | phrog_172 | head scaffolding protein | head and packaging | 1 | 21248 | 21862 |
| YP_873998.1 | NC_008583_p49 | major tail protein | phrog_238 | major tail protein | tail | 1 | 24560 | 25141 |
| YP_873994.1 | NC_008583_p45 | hypothetical protein | phrog_132 | head-tail adaptor | connector | 1 | 23168 | 23500 |
| YP_873967.1 | NC_008583_p18 | hypothetical protein | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 9750 | 10520 |
| YP_874003.1 | NC_008583_p54 | hypothetical protein | phrog_663 | minor head protein | head and packaging | 1 | 30395 | 32296 |
| YP_874009.1 | NC_008583_p60 | cell wall hydrolase | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 37075 | 38973 |
| YP_873961.1 | NC_008583_p12 | hypothetical protein | phrog_401 | unknown function | unknown function | 1 | 6186 | 6446 |
| YP_873968.1 | NC_008583_p19 | DNA replication protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 10530 | 11309 |
| YP_873997.1 | NC_008583_p48 | hypothetical protein | phrog_176 | tail terminator | connector | 1 | 24158 | 24541 |
| YP_873970.1 | NC_008583_p21 | endodeoxyribonuclease RusA | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 11705 | 12112 |
| YP_873984.1 | NC_008583_p35 | hypothetical protein | phrog_1367 | unknown function | unknown function | 1 | 15839 | 15985 |
| YP_874000.1 | NC_008583_p51 | hypothetical protein | phrog_441 | tail assembly chaperone | tail | 1 | 25598 | 25942 |
| YP_873982.1 | NC_008583_p33 | hypothetical protein | phrog_3885 | unknown function | unknown function | 1 | 15462 | 15662 |
| YP_874004.1 | NC_008583_p55 | hypothetical protein | phrog_287 | minor tail protein | tail | 1 | 32311 | 34221 |
| YP_873972.1 | NC_008583_p23 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 12298 | 12657 |
| YP_874008.1 | NC_008583_p59 | hypothetical protein | phrog_276 | unknown function | unknown function | 1 | 36639 | 36938 |
| YP_873977.1 | NC_008583_p28 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 13763 | 14212 |
| YP_873950.1 | NC_008583_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 84 | 1130 |
| YP_874007.1 | NC_008583_p58 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 36422 | 36598 |
| YP_873990.1 | NC_008583_p41 | hypothetical protein | phrog_1431 | unknown function | unknown function | 1 | 20943 | 21113 |
| YP_873999.1 | NC_008583_p50 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 25203 | 25568 |
| YP_873955.1 | NC_008583_p6 | hypothetical protein | phrog_6431 | unknown function | unknown function | 1 | 3464 | 3625 |
| YP_873966.1 | NC_008583_p17 | hypothetical protein | phrog_2232 | unknown function | unknown function | -1 | 8828 | 9685 |
| YP_873995.1 | NC_008583_p46 | hypothetical protein | phrog_348 | minor head protein | head and packaging | 1 | 23497 | 23799 |
| YP_874010.1 | NC_008583_p61 | tail fiber | phrog_1125 | tail fiber protein | tail | 1 | 38986 | 40158 |
| YP_873981.1 | NC_008583_p32 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | 1 | 15299 | 15487 |
| YP_873954.1 | NC_008583_p5 | transcription regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 3216 | 3449 |
| YP_873985.1 | NC_008583_p36 | transcriptional activator RinA | phrog_36 | transcriptional regulator | transcription regulation | 1 | 16009 | 16431 |
| YP_874005.1 | NC_008583_p56 | hypothetical protein | phrog_257 | minor tail protein | tail | 1 | 34221 | 36044 |
| YP_874002.1 | NC_008583_p53 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 29439 | 30386 |
| YP_874006.1 | NC_008583_p57 | hypothetical protein | phrog_300 | tail fiber protein | tail | 1 | 36044 | 36421 |
| YP_873983.1 | NC_008583_p34 | transcriptional activator RinB | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 15662 | 15838 |
| YP_873964.1 | NC_008583_p15 | hypothetical protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 7487 | 8038 |
| YP_873963.1 | NC_008583_p14 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 6670 | 7458 |
| YP_873962.1 | NC_008583_p13 | hypothetical protein | phrog_946 | unknown function | unknown function | 1 | 6456 | 6677 |
| YP_873965.1 | NC_008583_p16 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 8051 | 8722 |
| YP_873951.1 | NC_008583_p2 | excisionase | phrog_2033 | excisionase | integration and excision | 1 | 1243 | 1422 |
| YP_873989.1 | NC_008583_p40 | phage head morphogenesis protein | phrog_115 | minor head protein | head and packaging | 1 | 19875 | 20870 |
| YP_873956.1 | NC_008583_p7 | hypothetical protein | phrog_8835 | unknown function | unknown function | -1 | 3618 | 3863 |
| YP_873975.1 | NC_008583_p26 | hypothetical protein | phrog_467 | unknown function | unknown function | 1 | 13165 | 13575 |
| YP_873958.1 | NC_008583_p9 | hypothetical protein | phrog_2222 | unknown function | unknown function | -1 | 5418 | 5648 |
| YP_873959.1 | NC_008583_p10 | hypothetical protein | phrog_989 | unknown function | unknown function | 1 | 5719 | 5940 |
| YP_873978.1 | NC_008583_p29 | hypothetical protein | phrog_1034 | unknown function | unknown function | 1 | 14209 | 14493 |
| YP_873952.1 | NC_008583_p3 | hypothetical protein | phrog_2039 | unknown function | unknown function | -1 | 1402 | 2334 |
| YP_873993.1 | NC_008583_p44 | hypothetical protein | phrog_390 | Arc-like repressor | transcription regulation | 1 | 22872 | 23159 |
| YP_874001.1 | NC_008583_p52 | phage tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 25959 | 29426 |
| YP_873960.1 | NC_008583_p11 | hypothetical protein | phrog_369 | unknown function | unknown function | 1 | 5933 | 6094 |
| YP_873992.1 | NC_008583_p43 | head protein | phrog_10 | major head protein | head and packaging | 1 | 21876 | 22850 |
| YP_873969.1 | NC_008583_p20 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 11474 | 11695 |
| YP_873974.1 | NC_008583_p25 | hypothetical protein | phrog_258 | virulence associated | other | 1 | 12911 | 13159 |
| YP_873996.1 | NC_008583_p47 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 23799 | 24146 |
| YP_873973.1 | NC_008583_p24 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 12657 | 12911 |
| YP_873971.1 | NC_008583_p22 | hypothetical protein | phrog_299 | unknown function | unknown function | 1 | 12112 | 12297 |
| YP_873976.1 | NC_008583_p27 | hypothetical protein | phrog_2532 | unknown function | unknown function | 1 | 13572 | 13766 |
| YP_873987.1 | NC_008583_p38 | phage terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 17045 | 18322 |
| YP_873979.1 | NC_008583_p30 | hypothetical protein | phrog_266 | unknown function | unknown function | 1 | 14486 | 14734 |
| YP_873957.1 | NC_008583_p8 | antirepressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 4496 | 5242 |
| YP_873953.1 | NC_008583_p4 | phage repressor protein | phrog_4 | transcriptional repressor | transcription regulation | -1 | 2366 | 3004 |
| YP_874011.1 | NC_008583_p62 | hypothetical protein | phrog_1262 | unknown function | unknown function | 1 | 40164 | 40559 |
| YP_873986.1 | NC_008583_p37 | phage terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 16618 | 17058 |
| YP_874012.1 | NC_008583_p63 | holin | phrog_263 | holin | lysis | 1 | 40615 | 40917 |
| YP_873988.1 | NC_008583_p39 | phage portal protein | phrog_64 | portal protein | head and packaging | 1 | 18333 | 19868 |
| YP_874013.1 | NC_008583_p64 | amidase | phrog_489 | endolysin | lysis | 1 | 40929 | 42383 |