Genomic map of Staphylococcus phage phiNM (NC_008583)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_008583
Definition
Staphylococcus phage phiNM1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus.
DB of origin
REFSEQ
Length
43128
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
64
%GC
34.15
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_873980.1 NC_008583_p31 hypothetical protein phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 14727 15263
YP_873991.1 NC_008583_p42 hypothetical protein phrog_172 head scaffolding protein head and packaging 1 21248 21862
YP_873998.1 NC_008583_p49 major tail protein phrog_238 major tail protein tail 1 24560 25141
YP_873994.1 NC_008583_p45 hypothetical protein phrog_132 head-tail adaptor connector 1 23168 23500
YP_873967.1 NC_008583_p18 hypothetical protein phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 1 9750 10520
YP_874003.1 NC_008583_p54 hypothetical protein phrog_663 minor head protein head and packaging 1 30395 32296
YP_874009.1 NC_008583_p60 cell wall hydrolase phrog_759 tail associated cell-wall hydrolase other 1 37075 38973
YP_873961.1 NC_008583_p12 hypothetical protein phrog_401 unknown function unknown function 1 6186 6446
YP_873968.1 NC_008583_p19 DNA replication protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 10530 11309
YP_873997.1 NC_008583_p48 hypothetical protein phrog_176 tail terminator connector 1 24158 24541
YP_873970.1 NC_008583_p21 endodeoxyribonuclease RusA phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 11705 12112
YP_873984.1 NC_008583_p35 hypothetical protein phrog_1367 unknown function unknown function 1 15839 15985
YP_874000.1 NC_008583_p51 hypothetical protein phrog_441 tail assembly chaperone tail 1 25598 25942
YP_873982.1 NC_008583_p33 hypothetical protein phrog_3885 unknown function unknown function 1 15462 15662
YP_874004.1 NC_008583_p55 hypothetical protein phrog_287 minor tail protein tail 1 32311 34221
YP_873972.1 NC_008583_p23 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 12298 12657
YP_874008.1 NC_008583_p59 hypothetical protein phrog_276 unknown function unknown function 1 36639 36938
YP_873977.1 NC_008583_p28 hypothetical protein phrog_98 unknown function unknown function 1 13763 14212
YP_873950.1 NC_008583_p1 integrase phrog_1 integrase integration and excision -1 84 1130
YP_874007.1 NC_008583_p58 hypothetical protein phrog_134 unknown function unknown function 1 36422 36598
YP_873990.1 NC_008583_p41 hypothetical protein phrog_1431 unknown function unknown function 1 20943 21113
YP_873999.1 NC_008583_p50 hypothetical protein phrog_183 tail chaperone protein tail 1 25203 25568
YP_873955.1 NC_008583_p6 hypothetical protein phrog_6431 unknown function unknown function 1 3464 3625
YP_873966.1 NC_008583_p17 hypothetical protein phrog_2232 unknown function unknown function -1 8828 9685
YP_873995.1 NC_008583_p46 hypothetical protein phrog_348 minor head protein head and packaging 1 23497 23799
YP_874010.1 NC_008583_p61 tail fiber phrog_1125 tail fiber protein tail 1 38986 40158
YP_873981.1 NC_008583_p32 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 15299 15487
YP_873954.1 NC_008583_p5 transcription regulator phrog_3 transcriptional repressor transcription regulation 1 3216 3449
YP_873985.1 NC_008583_p36 transcriptional activator RinA phrog_36 transcriptional regulator transcription regulation 1 16009 16431
YP_874005.1 NC_008583_p56 hypothetical protein phrog_257 minor tail protein tail 1 34221 36044
YP_874002.1 NC_008583_p53 hypothetical protein phrog_33 distal tail protein Dit tail 1 29439 30386
YP_874006.1 NC_008583_p57 hypothetical protein phrog_300 tail fiber protein tail 1 36044 36421
YP_873983.1 NC_008583_p34 transcriptional activator RinB phrog_152 RinB-like transcriptional activator transcription regulation 1 15662 15838
YP_873964.1 NC_008583_p15 hypothetical protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 7487 8038
YP_873963.1 NC_008583_p14 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 6670 7458
YP_873962.1 NC_008583_p13 hypothetical protein phrog_946 unknown function unknown function 1 6456 6677
YP_873965.1 NC_008583_p16 hypothetical protein phrog_398 unknown function unknown function 1 8051 8722
YP_873951.1 NC_008583_p2 excisionase phrog_2033 excisionase integration and excision 1 1243 1422
YP_873989.1 NC_008583_p40 phage head morphogenesis protein phrog_115 minor head protein head and packaging 1 19875 20870
YP_873956.1 NC_008583_p7 hypothetical protein phrog_8835 unknown function unknown function -1 3618 3863
YP_873975.1 NC_008583_p26 hypothetical protein phrog_467 unknown function unknown function 1 13165 13575
YP_873958.1 NC_008583_p9 hypothetical protein phrog_2222 unknown function unknown function -1 5418 5648
YP_873959.1 NC_008583_p10 hypothetical protein phrog_989 unknown function unknown function 1 5719 5940
YP_873978.1 NC_008583_p29 hypothetical protein phrog_1034 unknown function unknown function 1 14209 14493
YP_873952.1 NC_008583_p3 hypothetical protein phrog_2039 unknown function unknown function -1 1402 2334
YP_873993.1 NC_008583_p44 hypothetical protein phrog_390 Arc-like repressor transcription regulation 1 22872 23159
YP_874001.1 NC_008583_p52 phage tape measure protein phrog_58 tail length tape measure protein tail 1 25959 29426
YP_873960.1 NC_008583_p11 hypothetical protein phrog_369 unknown function unknown function 1 5933 6094
YP_873992.1 NC_008583_p43 head protein phrog_10 major head protein head and packaging 1 21876 22850
YP_873969.1 NC_008583_p20 hypothetical protein phrog_433 unknown function unknown function 1 11474 11695
YP_873974.1 NC_008583_p25 hypothetical protein phrog_258 virulence associated other 1 12911 13159
YP_873996.1 NC_008583_p47 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 23799 24146
YP_873973.1 NC_008583_p24 hypothetical protein phrog_236 nucleotide kinase other 1 12657 12911
YP_873971.1 NC_008583_p22 hypothetical protein phrog_299 unknown function unknown function 1 12112 12297
YP_873976.1 NC_008583_p27 hypothetical protein phrog_2532 unknown function unknown function 1 13572 13766
YP_873987.1 NC_008583_p38 phage terminase large subunit phrog_2 terminase large subunit head and packaging 1 17045 18322
YP_873979.1 NC_008583_p30 hypothetical protein phrog_266 unknown function unknown function 1 14486 14734
YP_873957.1 NC_008583_p8 antirepressor phrog_63 anti-repressor Ant transcription regulation 1 4496 5242
YP_873953.1 NC_008583_p4 phage repressor protein phrog_4 transcriptional repressor transcription regulation -1 2366 3004
YP_874011.1 NC_008583_p62 hypothetical protein phrog_1262 unknown function unknown function 1 40164 40559
YP_873986.1 NC_008583_p37 phage terminase small subunit phrog_51 terminase small subunit head and packaging 1 16618 17058
YP_874012.1 NC_008583_p63 holin phrog_263 holin lysis 1 40615 40917
YP_873988.1 NC_008583_p39 phage portal protein phrog_64 portal protein head and packaging 1 18333 19868
YP_874013.1 NC_008583_p64 amidase phrog_489 endolysin lysis 1 40929 42383