Genomic map of Thermus phage phiYS40 (NC_008584)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_008584
Definition
Thermus phage phiYS40, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
DB of origin
REFSEQ
Length
152372
Host Name
Thermus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
170
%GC
32.58
Number of singletons
6
Number of paralogs
15

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_874119.1 NC_008584_p106 hypothetical protein phrog_20841 unknown function unknown function -1 96833 97354
YP_874175.1 NC_008584_p162 hypothetical protein phrog_28854 unknown function unknown function -1 145421 146374
YP_874143.1 NC_008584_p130 hypothetical protein phrog_20373 unknown function unknown function -1 112689 113195
YP_874051.1 NC_008584_p38 deoxycytidylate deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism 1 33730 34158
YP_874127.1 NC_008584_p114 glycosyltransferase phrog_17351 glycosyltransferase moron, auxiliary metabolic gene and host takeover -1 103616 104107
YP_874031.1 NC_008584_p18 DNA binding HTH-domain protein phrog_31591 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 16640 17050
YP_874179.1 NC_008584_p166 hypothetical protein phrog_31130 unknown function unknown function 1 148300 148689
YP_874040.1 NC_008584_p27 DEAD domain helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 23898 25247
YP_874074.1 NC_008584_p61 hypothetical protein phrog_38289 unknown function unknown function 1 52035 52484
YP_874062.1 NC_008584_p49 hypothetical protein phrog_35010 unknown function unknown function 1 40201 40548
YP_874118.1 NC_008584_p105 hypothetical protein phrog_17563 unknown function unknown function -1 96096 96626
YP_874041.1 NC_008584_p28 hypothetical protein phrog_32400 unknown function unknown function 1 25396 26796
YP_874170.1 NC_008584_p157 hypothetical protein phrog_30706 unknown function unknown function 1 138469 139269
YP_874043.1 NC_008584_p30 hypothetical protein phrog_37493 unknown function unknown function -1 27328 29085
YP_874158.1 NC_008584_p145 hypothetical protein phrog_38346 unknown function unknown function -1 125598 126548
YP_874136.1 NC_008584_p123 hypothetical protein phrog_21922 unknown function unknown function -1 108772 109290
YP_874114.1 NC_008584_p101 hypothetical protein phrog_17563 unknown function unknown function -1 93619 94131
YP_874174.1 NC_008584_p161 radical SAM superfamily enzyme phrog_16999 Fe-S oxidoreductase other -1 144357 145424
YP_874023.1 NC_008584_p10 hypothetical protein phrog_28072 unknown function unknown function -1 10816 11331
YP_874082.1 NC_008584_p69 tail sheath protein phrog_279 tail sheath tail -1 57775 59721
YP_874161.1 NC_008584_p148 hypothetical protein phrog_35766 unknown function unknown function 1 127065 127460
YP_874128.1 NC_008584_p115 hypothetical protein phrog_36343 unknown function unknown function -1 104451 104693
YP_874100.1 NC_008584_p87 hypothetical protein singleton unknown function unknown function -1 86382 86618
YP_874130.1 NC_008584_p117 hypothetical protein phrog_38554 unknown function unknown function -1 105422 105979
YP_874141.1 NC_008584_p128 hypothetical protein phrog_35078 unknown function unknown function -1 111663 112133
YP_874113.1 NC_008584_p100 hypothetical protein phrog_20841 unknown function unknown function -1 93045 93635
YP_874117.1 NC_008584_p104 hypothetical protein phrog_17563 unknown function unknown function -1 95510 96025
YP_874034.1 NC_008584_p21 hypothetical protein phrog_28994 unknown function unknown function -1 18834 19214
YP_874173.1 NC_008584_p160 hypothetical protein phrog_32538 unknown function unknown function 1 144155 144367
YP_874025.1 NC_008584_p12 RecA/RadA recombinase phrog_97 UvsX-like recombinase other -1 11776 12795
YP_874047.1 NC_008584_p34 hypothetical protein phrog_33779 unknown function unknown function -1 32491 32781
YP_874079.1 NC_008584_p66 hypothetical protein phrog_31812 unknown function unknown function 1 56049 56315
YP_874093.1 NC_008584_p80 hypothetical protein phrog_38288 unknown function unknown function -1 79880 80743
YP_874138.1 NC_008584_p125 hypothetical protein phrog_29459 unknown function unknown function -1 109998 110513
YP_874159.1 NC_008584_p146 hypothetical protein phrog_32092 unknown function unknown function -1 126553 126813
YP_874094.1 NC_008584_p81 hypothetical protein phrog_21121 unknown function unknown function -1 80788 82740
YP_874105.1 NC_008584_p92 hypothetical protein phrog_24400 unknown function unknown function -1 89349 89783
YP_874045.1 NC_008584_p32 hypothetical protein phrog_34750 unknown function unknown function -1 29818 30291
YP_874146.1 NC_008584_p133 hypothetical protein phrog_36948 unknown function unknown function -1 114385 115032
YP_874109.1 NC_008584_p96 hypothetical protein singleton unknown function unknown function 1 91231 91359
YP_874124.1 NC_008584_p111 hypothetical protein phrog_37167 unknown function unknown function -1 102138 102530
YP_874014.1 NC_008584_p1 distal tail fiber protein phrog_33119 long tail fiber protein distal subunit tail -1 7 1938
YP_874095.1 NC_008584_p82 hypothetical protein phrog_21121 unknown function unknown function -1 82771 84609
YP_874144.1 NC_008584_p131 hypothetical protein phrog_28334 unknown function unknown function -1 113202 113630
YP_874120.1 NC_008584_p107 hypothetical protein phrog_32906 unknown function unknown function -1 97575 99263
YP_874078.1 NC_008584_p65 TP-like protein phrog_32695 unknown function unknown function -1 55466 56017
YP_874182.1 NC_008584_p169 hypothetical protein phrog_38083 unknown function unknown function 1 151338 151907
YP_874151.1 NC_008584_p138 hypothetical protein phrog_32403 unknown function unknown function -1 117442 118005
YP_874088.1 NC_008584_p75 hypothetical protein phrog_28197 unknown function unknown function -1 64838 65098
YP_874160.1 NC_008584_p147 hypothetical protein phrog_29162 unknown function unknown function 1 126870 127055
YP_874155.1 NC_008584_p142 hypothetical protein phrog_29223 unknown function unknown function -1 120953 123997
YP_874132.1 NC_008584_p119 hypothetical protein phrog_33272 unknown function unknown function -1 106510 107076
YP_874171.1 NC_008584_p158 hypothetical protein phrog_30968 unknown function unknown function 1 139253 143296
YP_874056.1 NC_008584_p43 hypothetical protein phrog_32264 unknown function unknown function 1 38240 38446
YP_874058.1 NC_008584_p45 hypothetical protein phrog_35802 unknown function unknown function 1 38898 39227
YP_874029.1 NC_008584_p16 hypothetical protein phrog_28522 unknown function unknown function 1 15124 15453
YP_874022.1 NC_008584_p9 flavin-dependent thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 9955 10782
YP_874157.1 NC_008584_p144 M27/M37 peptidase phrog_14988 peptidase other -1 124553 125593
YP_874026.1 NC_008584_p13 recombination protein ERF phrog_30552 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 12792 13367
YP_874060.1 NC_008584_p47 hypothetical protein phrog_29488 unknown function unknown function 1 39441 39884
YP_874168.1 NC_008584_p155 hypothetical protein phrog_29526 unknown function unknown function 1 137294 137644
YP_874162.1 NC_008584_p149 hypothetical protein phrog_28393 unknown function unknown function 1 127471 127959
YP_874024.1 NC_008584_p11 hypothetical protein phrog_28760 unknown function unknown function -1 11310 11783
YP_874108.1 NC_008584_p95 hypothetical protein phrog_19431 unknown function unknown function -1 91036 91212
YP_874089.1 NC_008584_p76 hypothetical protein phrog_28821 unknown function unknown function -1 65085 69662
YP_874166.1 NC_008584_p153 hypothetical protein phrog_37714 unknown function unknown function 1 134253 136364
YP_874106.1 NC_008584_p93 hypothetical protein phrog_24400 unknown function unknown function -1 89796 90221
YP_874163.1 NC_008584_p150 baseplate assembly protein phrog_31189 baseplate protein tail 1 127979 129967
YP_874017.1 NC_008584_p4 hypothetical protein phrog_33186 unknown function unknown function -1 7412 8068
YP_874038.1 NC_008584_p25 ClpP protease phrog_94 head maturation protease head and packaging -1 22302 23015
YP_874080.1 NC_008584_p67 hypothetical protein phrog_20157 unknown function unknown function -1 56362 57102
YP_874104.1 NC_008584_p91 hypothetical protein singleton unknown function unknown function -1 88642 89250
YP_874086.1 NC_008584_p73 major structural protein phrog_752 major head protein head and packaging -1 61756 63168
YP_874116.1 NC_008584_p103 hypothetical protein phrog_35976 unknown function unknown function -1 94885 95373
YP_874101.1 NC_008584_p88 hypothetical protein phrog_19431 unknown function unknown function -1 86909 87154
YP_874131.1 NC_008584_p118 hypothetical protein phrog_34367 unknown function unknown function -1 105969 106520
YP_874135.1 NC_008584_p122 hypothetical protein phrog_32777 unknown function unknown function -1 108141 108644
YP_874156.1 NC_008584_p143 hypothetical protein phrog_38410 unknown function unknown function -1 124012 124536
YP_874129.1 NC_008584_p116 hypothetical protein phrog_30737 unknown function unknown function -1 104803 105279
YP_874111.1 NC_008584_p98 hypothetical protein phrog_29441 unknown function unknown function -1 91835 92380
YP_874097.1 NC_008584_p84 hypothetical protein phrog_21991 unknown function unknown function -1 85328 85558
YP_874084.1 NC_008584_p71 Zn ribbon phrog_36790 unknown function unknown function -1 60495 61157
YP_874072.1 NC_008584_p59 serine kinase phrog_22605 unknown function unknown function 1 49453 51312
YP_874115.1 NC_008584_p102 hypothetical protein phrog_20841 unknown function unknown function -1 94337 94873
YP_874137.1 NC_008584_p124 hypothetical protein phrog_25253 unknown function unknown function -1 109328 109819
YP_874147.1 NC_008584_p134 hypothetical protein phrog_32010 unknown function unknown function -1 115155 115724
YP_874048.1 NC_008584_p35 hypothetical protein phrog_28916 unknown function unknown function -1 32768 33034
YP_874050.1 NC_008584_p37 hypothetical protein phrog_28325 unknown function unknown function 1 33381 33746
YP_874126.1 NC_008584_p113 hypothetical protein phrog_17351 glycosyltransferase moron, auxiliary metabolic gene and host takeover -1 103077 103616
YP_874140.1 NC_008584_p127 hypothetical protein phrog_20373 unknown function unknown function -1 111157 111654
YP_874148.1 NC_008584_p135 hypothetical protein phrog_33978 unknown function unknown function -1 115727 116299
YP_874123.1 NC_008584_p110 hypothetical protein phrog_34311 unknown function unknown function -1 101227 101973
YP_874065.1 NC_008584_p52 UDP-3-O-[3-hydroxy-myristory] glucosamine N-acyltransferase phrog_36281 unknown function unknown function 1 42536 43408
YP_874070.1 NC_008584_p57 SpoVR phrog_35658 unknown function unknown function 1 46199 47536
YP_874035.1 NC_008584_p22 hypothetical protein phrog_28635 unknown function unknown function -1 19187 19960
YP_874183.1 NC_008584_p170 hypothetical protein phrog_34344 unknown function unknown function 1 151894 152157
YP_874049.1 NC_008584_p36 hypothetical protein phrog_36560 unknown function unknown function -1 33031 33309
YP_874139.1 NC_008584_p126 hypothetical protein phrog_20408 unknown function unknown function -1 110561 111145
YP_874154.1 NC_008584_p141 hypothetical protein phrog_30278 unknown function unknown function 1 120821 120994
YP_874177.1 NC_008584_p164 hypothetical protein phrog_38170 unknown function unknown function 1 147094 147639
YP_874046.1 NC_008584_p33 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 30387 32498
YP_874064.1 NC_008584_p51 hypothetical protein phrog_34971 unknown function unknown function 1 41010 42482
YP_874033.1 NC_008584_p20 hypothetical protein phrog_31151 unknown function unknown function -1 18400 18837
YP_874016.1 NC_008584_p3 portal protein phrog_37955 portal protein head and packaging -1 4573 7410
YP_874091.1 NC_008584_p78 hypothetical protein phrog_35380 unknown function unknown function -1 74931 75296
YP_874180.1 NC_008584_p167 hypothetical protein phrog_32455 unknown function unknown function 1 148736 150229
YP_874152.1 NC_008584_p139 hypothetical protein phrog_29804 unknown function unknown function -1 118395 119999
YP_874063.1 NC_008584_p50 hypothetical protein phrog_31532 unknown function unknown function 1 40558 41013
YP_874066.1 NC_008584_p53 hypothetical protein phrog_37780 unknown function unknown function 1 43411 43938
YP_874030.1 NC_008584_p17 IMP dehydrogenase/GMP reductase phrog_9582 dehydrogenase other 1 15467 16576
YP_874042.1 NC_008584_p29 sugar-phospahte nucleotidyltransferase phrog_799 DNA methyltransferase other 1 26822 27331
YP_874178.1 NC_008584_p165 hypothetical protein phrog_31677 unknown function unknown function 1 147677 148306
YP_874044.1 NC_008584_p31 hypothetical protein phrog_29169 unknown function unknown function -1 29090 29803
YP_874054.1 NC_008584_p41 ribonucleotide reductase alpha subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 35201 37594
YP_874027.1 NC_008584_p14 DNA helicase DnaB phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 13413 14756
YP_874059.1 NC_008584_p46 hypothetical protein phrog_37675 unknown function unknown function 1 39224 39439
YP_874176.1 NC_008584_p163 hypothetical protein phrog_31341 unknown function unknown function -1 146390 147022
YP_874037.1 NC_008584_p24 thymidine kinase phrog_592 thymidine kinase other -1 21669 22277
YP_874020.1 NC_008584_p7 hypothetical protein phrog_33568 unknown function unknown function -1 8801 9412
YP_874032.1 NC_008584_p19 hypothetical protein phrog_36136 unknown function unknown function -1 17108 18343
YP_874061.1 NC_008584_p48 hypothetical protein phrog_36392 unknown function unknown function 1 39877 40185
YP_874018.1 NC_008584_p5 S-adenosylmethionine decarboxylase phrog_3125 S-adenosylmethionine decarboxylase other -1 8096 8530
YP_874036.1 NC_008584_p23 DNA primase bacterial DnaG type phrog_6444 DNA primase DNA, RNA and nucleotide metabolism -1 19944 21620
YP_874096.1 NC_008584_p83 hypothetical protein phrog_21991 unknown function unknown function -1 84867 85094
YP_874142.1 NC_008584_p129 hypothetical protein phrog_20408 unknown function unknown function -1 112165 112677
YP_874075.1 NC_008584_p62 terminase large subunit phrog_2 terminase large subunit head and packaging -1 52477 54345
YP_874021.1 NC_008584_p8 dUTPase phrog_135 dUTPase DNA, RNA and nucleotide metabolism -1 9399 9941
YP_874102.1 NC_008584_p89 hypothetical protein phrog_31893 unknown function unknown function -1 87505 87990
YP_874153.1 NC_008584_p140 hypothetical protein phrog_38459 unknown function unknown function -1 120226 120777
YP_874053.1 NC_008584_p40 hypothetical protein phrog_30525 unknown function unknown function 1 34631 35155
YP_874071.1 NC_008584_p58 hypothetical protein phrog_31767 unknown function unknown function 1 47564 49414
YP_874165.1 NC_008584_p152 wac fibritin neck whisker phrog_36448 unknown function unknown function 1 131870 134260
YP_874052.1 NC_008584_p39 zinc metallopeptidase motif-containing protein phrog_19616 unknown function unknown function 1 34188 34616
YP_874125.1 NC_008584_p112 hypothetical protein phrog_17351 glycosyltransferase moron, auxiliary metabolic gene and host takeover -1 102531 103076
YP_874073.1 NC_008584_p60 dNMP kinase phrog_139 deoxynucleoside monophosphate kinase other 1 51410 51997
YP_874087.1 NC_008584_p74 hypothetical protein phrog_32465 head maturation protease head and packaging -1 63204 64838
YP_874077.1 NC_008584_p64 hypothetical protein phrog_28244 unknown function unknown function -1 55105 55485
YP_874015.1 NC_008584_p2 hypothetical protein phrog_32823 unknown function unknown function -1 1941 4586
YP_874085.1 NC_008584_p72 hypothetical protein phrog_38820 unknown function unknown function -1 61167 61682
YP_874081.1 NC_008584_p68 hypothetical protein phrog_20157 unknown function unknown function -1 57104 57754
YP_874055.1 NC_008584_p42 ribonucleotide reductase alpha subunit phrog_23565 ribonucleotide reductase DNA, RNA and nucleotide metabolism 1 37607 38206
YP_874067.1 NC_008584_p54 hypothetical protein phrog_33571 unknown function unknown function 1 43940 44425
YP_874039.1 NC_008584_p26 RecB family exonuclease phrog_1706 CRISPR/Cas system associated DNA, RNA and nucleotide metabolism -1 22975 23901
YP_874181.1 NC_008584_p168 hypothetical protein phrog_32268 unknown function unknown function 1 150256 151341
YP_874134.1 NC_008584_p121 hypothetical protein phrog_21922 unknown function unknown function -1 107552 108046
YP_874150.1 NC_008584_p137 hypothetical protein phrog_36633 unknown function unknown function 1 116815 117474
YP_874057.1 NC_008584_p44 hypothetical protein phrog_34965 unknown function unknown function 1 38459 38911
YP_874149.1 NC_008584_p136 hypothetical protein phrog_36670 unknown function unknown function -1 116271 116693
YP_874028.1 NC_008584_p15 hypothetical protein phrog_28453 unknown function unknown function -1 14743 15036
YP_874167.1 NC_008584_p154 hypothetical protein phrog_30748 unknown function unknown function 1 136388 137287
YP_874133.1 NC_008584_p120 hypothetical protein phrog_25253 unknown function unknown function -1 107090 107539
YP_874164.1 NC_008584_p151 hypothetical protein phrog_30797 unknown function unknown function 1 129964 131859
YP_874122.1 NC_008584_p109 hypothetical protein phrog_37975 unknown function unknown function -1 100462 101157
YP_874068.1 NC_008584_p55 hypothetical protein phrog_30036 unknown function unknown function -1 44426 45127
YP_874112.1 NC_008584_p99 hypothetical protein phrog_35511 unknown function unknown function -1 92503 93045
YP_874098.1 NC_008584_p85 hypothetical protein phrog_28716 unknown function unknown function -1 85767 85919
YP_874145.1 NC_008584_p132 hypothetical protein phrog_33335 unknown function unknown function 1 113852 114388
YP_874076.1 NC_008584_p63 hypothetical protein phrog_33520 unknown function unknown function -1 54320 55108
YP_874110.1 NC_008584_p97 hypothetical protein singleton unknown function unknown function -1 91417 91824
YP_874172.1 NC_008584_p159 hypothetical protein phrog_28485 unknown function unknown function 1 143322 143846
YP_874107.1 NC_008584_p94 hypothetical protein singleton unknown function unknown function -1 90481 90927
YP_874103.1 NC_008584_p90 hypothetical protein singleton unknown function unknown function -1 88074 88529
YP_874083.1 NC_008584_p70 hypothetical protein phrog_37615 unknown function unknown function -1 59782 60492
YP_874069.1 NC_008584_p56 conserved bacterial protein phrog_19072 unknown function unknown function 1 45187 46209
YP_874092.1 NC_008584_p79 helicase phrog_37249 helicase DNA, RNA and nucleotide metabolism -1 75309 79883
YP_874169.1 NC_008584_p156 hypothetical protein phrog_32951 unknown function unknown function 1 137634 138497
YP_874121.1 NC_008584_p108 ATPase phrog_1297 ATPase other -1 99280 100323
YP_874099.1 NC_008584_p86 hypothetical protein phrog_33017 unknown function unknown function -1 86022 86273
YP_874090.1 NC_008584_p77 hypothetical protein phrog_34055 unknown function unknown function -1 69684 74918
YP_874019.1 NC_008584_p6 hypothetical protein phrog_31483 unknown function unknown function -1 8564 8788